Johannes Darms (zbmed)
Satya S. Sahoo (case.edu)
Alpha Tom Kodamullil (Fraunhofer SCAI)
Astghik Sargsyan (Fraunhofer SCAI)
Philipp Wegner (Fraunhofer SCAI)
Shounak Baksi (Causality Biomodels)
Stephan Gebel (Fraunhofer SCAI)
Sumit Madan (Fraunhofer SCAI)
The Epilepsy Ontology (EPIO) is an assembly of structured knowledge on various aspects of epilepsy, developed according to basic formal ontology (BFO) and Open Biological and Biomedical Ontology (OBO) Foundry principles. Entities and definitions are collected from the latest International League against Epilepsy (ILAE) classification, as well as from domain-specific ontologies such as Epilepsy Ontology (EPILONT), Epilepsy Syndrome Seizure Ontology (ESSO), Epilepsy Semiology(EPISEM) and Epilepsy and Seizure Ontology (EPSO) and scientific literature.
This ontology is intended to be used for data management and for text mining purposes. The current release of the ontology is publicly available and is a community based effort to assemble various facets of the complex disease Epilepsy.
Epilepsy Ontology (EPIO)
EPIO by SEM-Group of Fraunhofer SCAI is licensed
under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/).
EPSO by SEM-Group of Fraunhofer SCAI is
licensed under CC BY 4.0. You are free to share (copy and redistribute
the material in any medium or format) and adapt (remix, transform, and
build upon the material) for any purpose, even commercially. for any
purpose, even commercially. The licensor cannot revoke these freedoms as
long as you follow the license terms. You must give appropriate credit
(by using the original ontology IRI for the whole ontology and original
term IRIs for individual terms), provide a link to the license, and
indicate if any changes were made. You may do so in any reasonable
manner, but not in any way that suggests the licensor endorses you or
your use.
2021-05-28
Version Release: 1.0.0
Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
Really of interest to developers only
BFO OWL specification label
Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2
Person:Alan Ruttenberg
Really of interest to developers only
BFO CLIF specification label
editor preferred label
editor preferred term
editor preferred term~editor preferred label
编辑首选术语
编辑首选标签
The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
对于一类或属性的简洁的、有意义的、与人类友好的名称由本体开发商首选。 (美国英语)
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
editor preferred label
editor preferred term
editor preferred term~editor preferred label
编辑首选术语
编辑首选术语~编辑首选标签
编辑首选标签
example
example of usage
A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not
A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
example of usage
has curation status
有管理状态
PERSON:Alan Ruttenberg
PERSON:Bill Bug
PERSON:Melanie Courtot
OBI_0000281
has curation status
有管理状态
definition
textual definition
定义
A property representing the English language definitions of what NCI means by the concept. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.
English language definitions of what NCI means by the concept. These are limited to 1024 characters. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.
OBI的官方定义,解释类或属性的含义。应该是亚里士多德式的,形式化和规范化的。 可以通过口语定义进行扩充。
The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
官方的定义,解释类或属性的含义。应该是亚里士多德式的,形式化和规范化的。 可以通过口语定义进行扩充。
2012-04-05:
Barry Smith
OBI的官方定义解释了一个类或属性的含义:'应该是亚里士多德式的,形式化和规范化的。可以用口语定义'是糟糕的。
您能解决这样的问题吗?
解释关于类或属性的表达含义的必要和充分条件的陈述。
Alan Ruttenberg
您提出的定义是一个合理的备选,除非它很常见,没有给出必要和充分的条件。大多数情况下它们是必要的,偶尔是必要的,充分的或者仅仅仅充分的。它们通常使用不是自己定义的术语,因此它们实际上不能通过这些标准进行评估。
关于拟议定义的具体内容:
我们没有“含义”,或“表达”或“属性”的定义。对于在预期意义上的“参考”,我认为我们使用术语“指示”。对于'表达',我认为我们和你的意思是符号,或标识符。对于“含义”,它不同于类和属性。对于类,我们希望文档能够让读者确定一个实体是否是该类的实例。对于属性,让我们的目标读者决定,给定一对潜在的关系,判断关系成立的断言正确与否。 “目标读者”部分表明我们也指定了我们期望的能够理解定义的人,并且概括了人类和计算机读者以包含文本和逻辑定义。
就我个人而言,我更愿意削弱对文档的定义,并指出什么是可取的。
我们还有一个悬而未决的问题,就是如何针对不同的受众定位不同的定义。临床读者阅读chebi需要来自受过化学训练的受众的不同类型的定义文档/定义,同样需要一个适合本体工作者的定义。
2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
DEFINITION
definition
definition
textual definition
定义
文本定义
editor note
编者注
An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
管理者注释用于其编辑器。它可能不包含在本体的出版版本中,所以它应该不包含最终用户了解本体所需的信息。
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obfoundry.org/obo/obi>
GROUP:OBI:<http://purl.obofoundry.org/obo/obi>
IAO:0000116
uberon
editor_note
编辑_注释
true
editor_note
编辑_注释
IAO:0000116
uberon
editor_note
1
true
editor_note
editor note
编者注
IAO:0000116
definition editor
term editor
术语编辑者
Name of editor entering the definition in the file. The definition editor is a point of contact for information regarding the term. The definition editor may be, but is not always, the author of the definition, which may have been worked upon by several people
Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
输入文件中术语编辑者的名称。术语编辑者是有关术语的信息交汇点。术语编辑者可以是,但并不总是,定义的作者,这可能是由几个人完成
20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.
20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
20110707,MC:术语编辑和定义进行相应的修改。见http://code.google.com/p/information-artifact-ontology/issues/detail?id=115。
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition editor
term editor
术语编辑者
alternative term
An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
PERSON:Daniel Schober
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
alternative term
definition source
定义来源
formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
正式引用,例如在外部数据库中的标识符,用于表示/定义的属性源(S)。自由文本表示/为定义属性源(S)。实例:在2007年1月31日的作者姓名,URI,MeSH术语C04,PUBMEDID,维基uri
PERSON:Daniel Schober
Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
论OBO-讨论邮件-列表,请参阅http://bit.ly/hgm99w
definition source
定义来源
curator note
An administrative note of use for a curator but of no use for a user
PERSON:Alan Ruttenberg
IAO:0000232
uberon
curator_notes
1
true
curator_notes
curator note
curator notes
imported from
引自
For external terms/classes, the ontology from which the term was imported
外部术语/类,术语引入的本体
PERSON:Alan Ruttenberg
PERSON:Melanie Courtot
GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
imported from
imported from
引自
OBO foundry unique label
elucidation
person:Alan Ruttenberg
Person:Barry Smith
Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms
elucidation
has associated axiom(nl)
Person:Alan Ruttenberg
Person:Alan Ruttenberg
An axiom associated with a term expressed using natural language
has associated axiom(nl)
has associated axiom(fol)
Person:Alan Ruttenberg
Person:Alan Ruttenberg
An axiom expressed in first order logic using CLIF syntax
has associated axiom(fol)
synonym
tag display synonym
An association created to allow the source CDRH to assign a parent to each concept with the intent of creating a hierarchy that includes only terms in which they are the contributing source.
A10
Conceptual Entity
Has CDRH Parent
Has_CDRH_Parent
Has_CDRH_Parent
Has_CDRH_Parent
An association created to allow the source NICHD to assign a parent to each concept with the intent of creating a hierarchy that includes only terms in which they are a contributing source.
A11
Conceptual Entity
Has_NICHD_Parent
Has_NICHD_Parent
Has_NICHD_Parent
An association that indicates that a finding or lab test is related to a gene, possibly through a variant or product.
A13
Conceptual Entity
Related_To_Genetic_Biomarker
Related_To_Genetic_Biomarker
Related_To_Genetic_Biomarker
An association that indicates that a neoplastic disease can have the characteristics defined by a Neoplasm by Special Category concept.
A14
Conceptual Entity
Neoplasm_Has_Special_Category
Neoplasm_Has_Special_Category
Neoplasm_Has_Special_Category
true
A property representing a concept unique identifier within the NCI Enterprise Vocabulary Service's NCI Thesaurus.
NHC0
Conceptual Entity
code
code
code
A property that represents a description of the sort of thing or category to which a concept belongs in the context of the UMLS semantic network.
P106
Conceptual Entity
Semantic Type
Semantic_Type
In general, applying semantic types aids in allowing users (or computer programs) to draw conclusions about concepts by virtue of the categories to which they have been assigned. We use a set of semantic types developed for the UMLS Metathesaurus. There are currently 134 semantic types in the UMLS.
Semantic_Type
Semantic_Type
A property representing an alternative Preferred Name for use in some NCI systems.
P107
Conceptual Entity
Display Name
Display_Name
Display Name
Display_Name
Display_Name
A property representing the word or phrase that NCI uses by preference to refer to the concept.
P108
Conceptual Entity
Preferred Name
Preferred_Name
Preferred Name
Preferred Term
Preferred_Name
Preferred_Name
A property representing the concept unique identifier (CUI) assigned by the National Library of Medicine (NLM). If a concept in any NCI-maintained knowledgebase exists in the NLM Unified Medical Language System (UMLS), NCI includes the NLM CUI among the information we provide about the concept.
P207
Conceptual Entity
UMLS CUI
UMLS_CUI
UMLS_CUI
UMLS_CUI
A property representing the concept unique identifier (CUI) for those concepts that appear in NCI Metathesaurus but not in the National Library of Medicine Unified Medical Language System (NLM UMLS).
P208
Conceptual Entity
NCI Metathesaurus CUI
NCI_META_CUI
NCI_META_CUI
NCI_META_CUI
A property used to indicate the standing of a concept in relation to currently accepted classifications and concepts. In NCI Thesaurus concept status subtype indicates concepts with unusual and problematic characteristics that should be evaluated by people and/or programs before those concept are used.
P310
Conceptual Entity
Concept Status
Concept_Status
Concept_Status
Concept_Status
A property used to flag terms that are part of an FDA data standard manual, including Route of Administration, Dosage Form, Package Type and Potency.
P317
Conceptual Entity
FDA Table
FDA_Table
FDA_Table
FDA_Table
A property is used to indicate when a non-EVS entity has contributed to, and has a stake in, a concept. This is used where such entities, within or outside NCI, have indicated the need to be able to track their own concepts. A single concept can have multiple instances of this property if multiple entities have such a defined stake.
P322
Conceptual Entity
Contributing Source
Contributing_Source
Contributing_Source
Contributing_Source
A property representing the English language definition of a concept from a source other than NCI.
P325
Conceptual Entity
[source] Definition
ALT_DEFINITION
ALT_DEFINITION
ALT_DEFINITION
A property representing a term that had been used in a coding system and then subsumed by the given NCIt concept.
P333
Conceptual Entity
Use For
Use_For
Use_For
Use_For
A property representing the matching ICD-O-3 code for the NCI Thesaurus concept.
P334
Conceptual Entity
ICD-O-3 Code
ICD-O-3_Code
ICD-O-3_Code
ICD-O-3_Code
A property representing the morphologic, clinical, and genetic profile of a neoplastic growth that defines it as benign, malignant, or of uncertain cancerous potential.
P363
Conceptual Entity
Neoplastic Status
Neoplastic_Status
FDA
Neoplastic_Status
Neoplastic_Status
true
A property representing a retired unique concept identifier created and stored as Concept Name by legacy EVS software. Use of these values was long discouraged, but continued as late as 2009 when creation of new values ceased and Concept Name was retired. Legacy values are intended solely to help resolve and update earlier coding.
P366
Conceptual Entity
Legacy Concept Name
Legacy Concept Name
Legacy_Concept_Name
Legacy Concept Name
Legacy_Concept_Name
A property representing a term chosen by NICHD to be used in the representation of the NICHD hierarchy.
P371
Conceptual Entity
NICHD_Hierarchy_Term
NICHD
NICHD_Hierarchy_Term
NICHD_Hierarchy_Term
A property representing whether a value set is ready for publication in the browser.
P372
Conceptual Entity
Publish_Value_Set
Publish_Value_Set
Publish_Value_Set
A property representing that a term in another terminology has been mapped to a term in NCIt and describes the relationship between the mapped terms.
P375
Conceptual Entity
Maps_To
Maps_To
Maps_To
A property representing notations made by NCI vocabulary curators. They are intended to provide supplemental, unstructured information to the user or additional insight about the concept.
P98
Conceptual Entity
DesignNote
DesignNote
DesignNote
DesignNote
has_MedDRA_id
ISA alternative term
An alternative term used by the ISA tools project (http://isa-tools.org).
Requested by Alejandra Gonzalez-Beltran
https://sourceforge.net/tracker/?func=detail&aid=3603413&group_id=177891&atid=886178
Person: Alejandra Gonzalez-Beltran
Person: Philippe Rocca-Serra
ISA tools project (http://isa-tools.org)
ISA alternative term
IEDB alternative term
An alternative term used by the IEDB.
PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters
IEDB
IEDB alternative term
S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T.
RO:0002174
uberon
dubious_for_taxon
true
true
dubious_for_taxon
this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost
dubious_for_taxon
S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S
RO:0002175
applicable for taxon
uberon
present_in_taxon
true
true
present_in_taxon
present_in_taxon
'anterior end of organism' is-opposite-of 'posterior end of organism'
'increase in temperature' is-opposite-of 'decrease in temperature'
x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).
RO:0002604
quality
is_opposite_of
true
true
is_opposite_of
is opposite of
is_opposite_of
An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.
UBPROP:0000001
uberon
external_definition
true
external_definition
This annotation property may be replaced with an annotation property from an external ontology such as IAO
external_definition
A textual description of an axiom loss in this ontology compared to an external ontology.
UBPROP:0000002
uberon
axiom_lost_from_external_ontology
true
axiom_lost_from_external_ontology
This annotation property may be replaced with an annotation property from an external ontology such as IAO
axiom_lost_from_external_ontology
Notes on the homology status of this class.
UBPROP:0000003
uberon
homology_notes
true
homology_notes
This annotation property may be replaced with an annotation property from an external ontology such as IAO
homology_notes
Used to connect a class to an adjectival form of its label. For example, a class with label 'intestine' may have a relational adjective 'intestinal'.
UBPROP:0000007
uberon
has_relational_adjective
true
has_relational_adjective
has_relational_adjective
Notes on the how instances of this class vary across species.
UBPROP:0000008
uberon
taxon_notes
true
taxon_notes
taxon_notes
Notes on the ontogenic development of instances of this class.
This annotation property may be replaced with an annotation property from an external ontology such as IAO
UBPROP:0000011
uberon
development_notes
true
development_notes
development_notes
Notes on how similar or equivalent classes are represented in other ontologies.
This annotation property may be replaced with an annotation property from an external ontology such as IAO
UBPROP:0000012
uberon
external_ontology_notes
true
external_ontology_notes
external_ontology_notes
FMA has terms like 'set of X'. In general we do not include set-of terms in uberon, but provide a mapping between the singular form and the FMA set term
UBPROP:0000202
uberon
fma_set_term
true
fma_set_term
fma_set_term
excluded_subClassOf
true
excluded subClassOf
A metadata relation between a class and its taxonomic rank (eg species, family)
ncbi_taxonomy
has_rank
uberon
dc-contributor
true
dc-contributor
contributor
uberon
dc-creator
true
dc-creator
creator
created_by
creation_date
has_alternative_id
has_broad_synonym
A property representing a reference to an identical or very similar object in another database.
Reference database or publication source.
Conceptual Entity
xRef
database_cross_reference
xRef
数据库_交叉_引用
A property representing a fully qualified synonym, contains the string, term type, source, and an optional source code if appropriate. Each subfield is deliniated to facilitate interpretation by software.
An alternative label for a given entity such as a commonly used abbreviation or synonym.
FULL_SYN
Synonym with Source Data
alternative_term
has exact synonym
has_exact_synonym
has_narrow_synonym
Name space of the ontology.
disease_ontology
has_obo_namespace
has_obo_namespace
有_obo_命名空间
has_related_synonym
oboInOwl:hasRelatedSynonym
An identifier is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.
id
An association that connects the concept defining a particular terminology subset with concepts that belong to this subset.
In subset.
Concept_In_Subset
in subset
in_subset
shorthand
Comment.
comment
Is defined by.
rdfs:isDefinedBy
label
A human readable name for this class.
label
label
标签
http://www.w3.org/2000/01/rdf-schema#seeAlso
uberon
seeAlso
true
true
seeAlso
see also
seeAlso
uberon
depicted_by
true
depicted_by
depicted by
Concept is taken from other resources than PubMed
concept is derived from Epilepsy Ontology (EPILONT) https://bioportal.bioontology.org/ontologies/EPILONT
concept is derived from Epilepsy Syndrome Seizure Ontology (ESSO) https://bioportal.bioontology.org/ontologies/ESSO
concept isderived from Epilepsy and Seizure Ontology (EpSO) https://bioportal.bioontology.org/ontologies/EPSO
concept is derived from International League Against Epilpesy (ILAE) seizure classification (https://www.epilepsydiagnosis.org/index.html
Concept is taken from NCBI book
Concepts is taken from PubMed article
The subject classifies the object.
isClassificationFor
The subject describes the estimated relation between brain regions (object).
isBrainConnectivityFor
The subject is a risk factor the the object.
isRiskFactorFor
The subject describes a diagnosis for the object.
isDiagnosisFor
The subject describes as sign/symptom or multiple signs/symptoms for the object.
isSignAndSymptomFor
The subject describes a syndrome for the object.
isSyndromeFor
The subject describes the object's limitation.
isImitatorFor
The subject is the cause (etiology) for the object.
isEtiologyFor
The subject assignes the object a seizure class.
isSeizureClassificationFor
The subject describes a treatment for the object.
isTreatmentFor
The subject describes an anatomical feature of the references object.
isAnatomicalEntityFor
The subject describes any process that is carried out at the cellular level, but not necessarily restricted to a single cell for the object.
isCellularProcessFor
entity
Entity
Julius Caesar
Verdi’s Requiem
the Second World War
your body mass index
BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
entity
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
per discussion with Barry Smith
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
continuant
Continuant
An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
continuant
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
occurrent
Occurrent
An entity that has temporal parts and that happens, unfolds or develops through time.
BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
occurrent
Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
per discussion with Barry Smith
Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
ic
IndependentContinuant
a chair
a heart
a leg
a molecule
a spatial region
an atom
an orchestra.
an organism
the bottom right portion of a human torso
the interior of your mouth
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
independent continuant
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
s-region
SpatialRegion
BFO 2 Reference: Spatial regions do not participate in processes.
Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
spatial region
Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
per discussion with Barry Smith
A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
t-region
TemporalRegion
Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]
temporal region
Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
per discussion with Barry Smith
A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]
2d-s-region
TwoDimensionalSpatialRegion
an infinitely thin plane in space.
the surface of a sphere-shaped part of space
A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]
two-dimensional spatial region
A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]
st-region
SpatiotemporalRegion
the spatiotemporal region occupied by a human life
the spatiotemporal region occupied by a process of cellular meiosis.
the spatiotemporal region occupied by the development of a cancer tumor
A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
Every spatiotemporal region occupies_spatiotemporal_region itself.
Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]
spatiotemporal region
A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]
process
Process
a process of cell-division, \ a beating of the heart
a process of meiosis
a process of sleeping
the course of a disease
the flight of a bird
the life of an organism
your process of aging.
An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
process
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
disposition
Disposition
an atom of element X has the disposition to decay to an atom of element Y
certain people have a predisposition to colon cancer
children are innately disposed to categorize objects in certain ways.
the cell wall is disposed to filter chemicals in endocytosis and exocytosis
BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
disposition
b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
realizable
RealizableEntity
the disposition of this piece of metal to conduct electricity.
the disposition of your blood to coagulate
the function of your reproductive organs
the role of being a doctor
the role of this boundary to delineate where Utah and Colorado meet
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
realizable entity
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
0d-s-region
ZeroDimensionalSpatialRegion
A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]
zero-dimensional spatial region
A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]
quality
Quality
the ambient temperature of this portion of air
the color of a tomato
the length of the circumference of your waist
the mass of this piece of gold.
the shape of your nose
the shape of your nostril
a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
quality
a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
sdc
SpecificallyDependentContinuant
Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
of one-sided specifically dependent continuants: the mass of this tomato
of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
the disposition of this fish to decay
the function of this heart: to pump blood
the mutual dependence of proton donors and acceptors in chemical reactions [79
the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
the pink color of a medium rare piece of grilled filet mignon at its center
the role of being a doctor
the shape of this hole.
the smell of this portion of mozzarella
A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
specifically dependent continuant
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
per discussion with Barry Smith
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
role
Role
John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
the priest role
the role of a boundary to demarcate two neighboring administrative territories
the role of a building in serving as a military target
the role of a stone in marking a property boundary
the role of subject in a clinical trial
the student role
BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
role
b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
fiat-object-part
FiatObjectPart
or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29
the FMA:regional parts of an intact human body.
the Western hemisphere of the Earth
the division of the brain into regions
the division of the planet into hemispheres
the dorsal and ventral surfaces of the body
the upper and lower lobes of the left lung
BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions
b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
fiat object part
b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
1d-s-region
OneDimensionalSpatialRegion
an edge of a cube-shaped portion of space.
A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]
one-dimensional spatial region
A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]
object-aggregate
ObjectAggregate
a collection of cells in a blood biobank.
a swarm of bees is an aggregate of members who are linked together through natural bonds
a symphony orchestra
an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
defined by fiat: the aggregate of members of an organization
defined through physical attachment: the aggregate of atoms in a lump of granite
defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
defined via attributive delimitations such as: the patients in this hospital
the aggregate of bearings in a constant velocity axle joint
the aggregate of blood cells in your body
the nitrogen atoms in the atmosphere
the restaurants in Palo Alto
your collection of Meissen ceramic plates.
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
object aggregate
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
3d-s-region
ThreeDimensionalSpatialRegion
a cube-shaped region of space
a sphere-shaped region of space,
A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]
three-dimensional spatial region
A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]
site
Site
Manhattan Canyon)
a hole in the interior of a portion of cheese
a rabbit hole
an air traffic control region defined in the airspace above an airport
the Grand Canyon
the Piazza San Marco
the cockpit of an aircraft
the hold of a ship
the interior of a kangaroo pouch
the interior of the trunk of your car
the interior of your bedroom
the interior of your office
the interior of your refrigerator
the lumen of your gut
your left nostril (a fiat part – the opening – of your left nasal cavity)
b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]
site
b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]
object
Object
atom
cell
cells and organisms
engineered artifacts
grain of sand
molecule
organelle
organism
planet
solid portions of matter
star
BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.
BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).
BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47
BFO 2 Reference: an object is a maximal causally unified material entity
BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74
b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
object
b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
gdc
GenericallyDependentContinuant
The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
generically dependent continuant
b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
function
Function
the function of a hammer to drive in nails
the function of a heart pacemaker to regulate the beating of a heart through electricity
the function of amylase in saliva to break down starch into sugar
BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
function
A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
p-boundary
ProcessBoundary
the boundary between the 2nd and 3rd year of your life.
p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]
process boundary
p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]
1d-t-region
OneDimensionalTemporalRegion
the temporal region during which a process occurs.
BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).
A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]
one-dimensional temporal region
A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]
material
MaterialEntity
a flame
a forest fire
a human being
a hurricane
a photon
a puff of smoke
a sea wave
a tornado
an aggregate of human beings.
an energy wave
an epidemic
the undetached arm of a human being
BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
material entity
A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
cf-boundary
ContinuantFiatBoundary
b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.
BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29
Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
Every continuant fiat boundary is located at some spatial region at every time at which it exists
(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]
continuant fiat boundary
Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]
b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
immaterial
ImmaterialEntity
BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10
immaterial entity
1d-cf-boundary
OneDimensionalContinuantFiatBoundary
The Equator
all geopolitical boundaries
all lines of latitude and longitude
the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.
the median sulcus of your tongue
a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]
one-dimensional continuant fiat boundary
a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]
process-profile
ProcessProfile
On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels
One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.
The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.
b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]
process profile
b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]
r-quality
RelationalQuality
John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
a marriage bond, an instance of requited love, an obligation between one person and another.
b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]
relational quality
b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]
2d-cf-boundary
TwoDimensionalContinuantFiatBoundary
a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]
two-dimensional continuant fiat boundary
a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]
0d-cf-boundary
ZeroDimensionalContinuantFiatBoundary
the geographic North Pole
the point of origin of some spatial coordinate system.
the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet
zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]
zero-dimensional continuant fiat boundary
zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]
0d-t-region
ZeroDimensionalTemporalRegion
a temporal region that is occupied by a process boundary
right now
the moment at which a child is born
the moment at which a finger is detached in an industrial accident
the moment of death.
temporal instant.
A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]
zero-dimensional temporal region
A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]
history
History
A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
history
A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
MGI:2159768
https://www.ncbi.nlm.nih.gov/pubmed/26254980
mouse DBA/2 inbred strain
小鼠DBA/2近交系
true
YH, AD
https://en.wikipedia.org/wiki/Embryonic_stem_cell
https://en.wikipedia.org/wiki/Induced_pluripotent_stem_cell
https://www.ncbi.nlm.nih.gov/pubmed/16904174
A stem cell line cell that is pluripotent and is generated from an adult somatic cell.
iPS cell
iPSC
https://www.ncbi.nlm.nih.gov/pubmed/30233290
induced pluripotent stem cell line cell
true
A quantitative or qualitative value which is the result of an act of assessing a morphological or physiological state or property in a single individual or sample or a group of individuals or samples, based on direct observation or experimental manipulation.
Clinical Evaluation
Laboratory test
clinical measurement
http://www.case.edu/EpSO.owl#ClinicalEvaluation
true
Any value resulting from the quantification of a morphological or physiological parameter pertaining to the heart and/or blood vessels.
cardiovascular measurement
The number of contractions of the cardiac ventricles per unit of time.
https://www.ncbi.nlm.nih.gov/pubmed/12181003
heart rate
true
true
Measurement of the structure or forms of the entire body or parts of the body of an organism.
anthropometric measurement
morphometry
body morphological measurement
A quantification of a parameter of the chemical composition of blood.
blood molecular composition measurement
blood chemistry measurement
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
The number of white blood cells in a specified volume of blood.
leukocyte count
white corpuscle count
white blood cell count
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
Any measurement involving the amount, composition or type of protein, the complex organic compounds containing carbon, hydrogen, oxygen, nitrogen, and sulfur consisting of alpha-amino acids joined by peptide linkages, in blood.
blood protein measurement
The number of platelets (thrombocytes) in a specified volume of blood, usually expressed as platelets per cubic millimeter of whole blood.
platelet count
https://www.epilepsy.com/learn/treating-seizures-and-epilepsy/seizure-and-epilepsy-medicines/blood-testing
true
A measurement of the blood, it's contents, cells or other factors contained within the blood.
blood measurement
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
A value resulting from the quantification of a morphological or physiological parameter of blood cells, i.e. cells native to the circulation, including those of erythroid, lymphoid, myeloid and monocytic lineages. A cell is a membrane-enclosed protoplasmic mass constituting the smallest structural unit of an organism that is capable of independent functioning.
blood cell measurement
Percentage of total blood volume that is made up of red blood cells.
Hct
packed cell volume
packed red blood cell volume
hematocrit
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
A measure of the average volume or size of a single red blood cell. It is derived by dividing the total volume of packed red blood cells by the total red blood cell count.
MCV
mean corpuscular volume
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
mshimoyama
2009-12-17T10:41:54Z
Measurement of the amount of glucose, the monosaccharide sugar, C6H12O6, occurring widely in plant and animal tissues which is one of the three dietary monosaccharides that are absorbed directly into the bloodstream during digestion, is the end product of carbohydrate metabolism, and is the chief source of energy for living organisms, in a specified volume of blood, the fluid that circulates through the heart, arteries, capillaries and veins carrying nutrients and oxygen to the body tissues and metabolites away from them.
https://www.ncbi.nlm.nih.gov/pubmed/29110774
blood glucose level
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
A quantification of one or more mineral salts found in the blood in the form of electrically charged ions.
blood electrolyte measurement
Any quantitation of the catalytic effect exerted by an enzyme in a specified sample of blood. An enzyme is a protein that catalyzes chemical reactions of other substances without itself being destroyed or altered upon completion of the reaction(s).
Not4Curation
blood enzyme activity level
A measurement to assess the morphological or physiological state of the respiratory system or portion of the respiratory system.
respiratory system measurement
mshimoyama
2011-09-21T11:16:38Z
ventilation measurement
mshimoyama
2010-06-10T09:12:14Z
Morphological measurement of the top most or forward most division of an organism's body usually containing the brain and sense organs.
head morphological measurement
mshimoyama
2010-06-10T09:12:29Z
Total distance around the head of an organism.
https://www.ncbi.nlm.nih.gov/pubmed/2384077
head circumference
true
true
mshimoyama
2010-06-17T10:30:36Z
Any quantification of a morphological or physiological parameter of one or more cells. A cell is a membrane-enclosed protoplasmic mass constituting the smallest structural unit of an organism that is capable of independent functioning.
cell measurement
mshimoyama
2010-06-17T11:28:45Z
Distance completely around the body in the area between the thorax and hips. In humans, this is commonly at the umbilicus.
waist girth
https://www.ncbi.nlm.nih.gov/pubmed/25179745
waist circumference
true
true
mshimoyama
2011-09-21T11:30:32Z
The number of breaths taken by an organism per unit of time.
breathing frequency
pulmonary ventilation rate
respiratory rate
respiration rate
true
mshimoyama
2010-08-04T10:37:40Z
The count of the rhythmic contractions and expansions of an artery due to the surge of blood from the beat of the heart.
pulse
true
mshimoyama
2010-08-04T01:50:13Z
abdominal morphological measurement
mshimoyama
2011-01-04T02:53:16Z
The amount of potassium ions in a specified volume of blood.
blood potassium level
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
mshimoyama
2011-01-04T03:13:20Z
The amount of calcium ions in a specified volume of blood.
blood calcium level
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
mshimoyama
2011-01-05T09:20:32Z
A measure of the oxygen carrying pigment of erythrocytes.
haemoglobin measurement
hemoglobin measurement
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
JSmith
2012-02-15T05:06:19Z
This is not the same term as the original "heart measurement". That term is now "heart morphological measurement".
heart measurement
JSmith
2012-07-12T01:22:42Z
Any measurement of platelets, the disk-shaped structures found in the blood of mammals which play a vital role in blood coagulation. Platelets lack nuclei and DNA but contain active enzymes and mitochondria.
platelet measurement
https://www.epilepsy.com/learn/treating-seizures-and-epilepsy/seizure-and-epilepsy-medicines/blood-testing
true
JSmith
2013-01-07T13:38:48Z
Any measurement of the nervous system, the organ system which, along with the endocrine system, correlates the adjustments and reactions of the organism to its internal and external environment via transmission of information, in the form of electrochemical impulses, throughout the body.
nervous system measurement
JSmith
2013-01-07T16:14:04Z
Any measurement of the fluid contained within the ventricles of the brain, the subarachnoid space, and the central canal of the spinal cord.
https://www.ncbi.nlm.nih.gov/pubmed/26575850
cerebrospinal fluid measurement
true
JSmith
2013-01-07T16:22:14Z
A quantification of a parameter of the chemical composition of the cerebrospinal fluid, the fluid contained within the ventricles of the brain, the subarachnoid space, and the central canal of the spinal cord.
Not4Curation
cerebrospinal fluid chemistry measurement
https://link.springer.com/article/10.1007/BF02075764
true
JSmith
2013-01-07T16:25:29Z
A quantification of one or more mineral salts found in the cerebrospinal fluid in the form of electrically charged ions.
cerebrospinal fluid electrolyte measurement
https://link.springer.com/article/10.1007/BF02075764
true
JSmith
2013-01-07T16:39:25Z
Measurement of the amount of choride, the negatively charged ion of chlorine, found in a specified volume of cerebrospinal fluid.
cerebrospinal fluid chloride level
https://link.springer.com/article/10.1007/BF02075764
true
JSmith
2013-01-07T16:42:05Z
The amount of cationic sodium in a specified volume of cerebrospinal fluid.
cerebrospinal fluid sodium level
https://link.springer.com/article/10.1007/BF02075764
true
JSmith
2013-01-09T13:44:03Z
The amount of lactate, a salt of lactic acid which is produced in the body by anaerobic metabolism of carbohydrate, in a specified volume of blood.
https://www.ncbi.nlm.nih.gov/pubmed/29110774
blood lactate level
true
JSmith
2013-01-10T17:31:25Z
Any measurement of a single red blood cell, one of the hemoglobin-containing blood cells that transport oxygen and carbon dioxide to and from the tissues, or of all of the red blood cells in a sample of blood.
erythrocyte measurement
red blood cell measurement
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
JSmith
2013-11-26T11:05:41Z
Any measurement related to a morphological or physiological parameter, such as the amount or composition, of cytokines in blood, the fluid that circulates through the heart, arteries, capillaries and veins carrying nutrients and oxygen to the body tissues and metabolites away from them. A cytokine is a type of nonantibody protein released by a cell population on contact with specific antigen, which acts as an intercellular mediator, as in the generation of an immune response.
https://www.ncbi.nlm.nih.gov/pubmed/28288363
blood cytokine measurement
true
JSmith
2013-12-02T13:23:47Z
Any quantification of a morphological or physiological parameter of the central nervous system, i.e., the brain and/or spinal cord.
CNS measurement
central nervous system measurement
JSmith
2014-03-11T14:12:54Z
The amount of enzymatic activity of creatine kinase (CK) enzyme in a specified sample of blood. CK catalyses the reversible transfer of phosphate between ATP and various phosphogens such as creatine phosphate. Blood CK level is used as an enzymatic marker for myocardial infarction, rhabdomyolysis and acute renal failure.
blood creatine phosphokinase activity level
blood CK activity level
blood CPK activity level
https://www.ncbi.nlm.nih.gov/pubmed/28288363
blood creatine kinase activity level
true
JSmith
2014-04-24T12:47:44Z
Any value resulting from the quantification of a morphological or physiological parameter of leukocytes, largely colorless blood corpuscles capable of ameboid movement, whose chief function is to protect the body against microorganisms and other disease-causing entities.
leukocyte measurement
white blood cell measurement
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
JSmith
2014-06-24T15:58:42Z
Any measurement of a protein that catalyzes chemical reactions of other substances without itself being destroyed or altered upon completion of the reaction(s) in a specified sample of blood.
Not4Curation
blood enzyme measurement
A disease that involving errors in metabolic processes of building or degradation of molecules.
ICD10CM:E88.9
ICD9CM:277.9
MESH:D008659
NCI:C3235
SNOMEDCT_US_2018_03_01:30390004
SNOMEDCT_US_2018_03_01:75934005
UMLS_CUI:C0025517
Metabolic Disorder
metabolic disease
disease_ontology
DOID:0014667
disease of metabolism
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders
true
An acquired metabolic disease that is characterized by abnormal carbohydrate metabolism.
disease_ontology
DOID:0050013
carbohydrate metabolism disease
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
infectious disease
DOID:10115
DOID:11078
DOID:1304
DOID:1321
DOID:2040
DOID:2288
DOID:3099
DOID:4120
DOID:4620
DOID:5256
DOID:945
DOID:95
DOID:9532
DOID:9696
ICD9CM:079.0
UMLS_CUI:C0001485
infectious disease
disease_ontology
DOID:0050117
DO:wk
disease by infectious agent
A nervous system disease which is located in a part of the nervous system responsible for processing sensory information that consists of sensory receptors, neural pathways, and parts of the brain involved in sensory perception. Commonly recognized sensory systems are those for vision, hearing, somatic sensation (touch), taste and olfaction (smell).
disease_ontology
DOID:0050155
sensory system disease
A respiratory system disease which involves the lower respiratory tract.
ICD9CM:478.1
ICD9CM:478.19
UMLS_CUI:C0029581
disease_ontology
DOID:0050161
lower respiratory tract disease
A genetic disease that is the result of one or more abnormal alleles and may be dominant, semi-dominant, or recessive.
disease_ontology
DOID:0050177
monogenic disease
A bacterial infectious disease that results_in infection by bacteria as a result of their presence or activity within the normal, healthy host, and their intrinsic virulence is, in part, a necessary consequence of their need to reproduce and spread.
disease_ontology
DOID:0050338
primary bacterial infectious disease
A central nervous system disease characterized by throbbing, pulling creeping or other unpleasant sensations in the legs and the irresistible urge to move them.
EFO:0004270
GARD:11926
ICD10CM:G25.81
ICD9CM:333.94
MESH:D012148
NCI:C84501
OMIM:PS102300
SNOMEDCT_US_2018_03_01:32914008
UMLS_CUI:C0035258
WED
Willis-Ekbom disease
Wittmaack-Ekbom syndrome
disease_ontology
DOID:0050425
Xref MGI.
restless legs syndrome
http://www.case.edu/EpSO.owl#RestlessLegSyndrome
https://www.epilepsy.com/learn/professionals/co-existing-disorders/sleep-disorders/periodic-limb-movements-and-restless-legs
true
A heart conduction disease that is characterized by abnormal electrocardiogram (ECG) findings and an increased risk of sudden cardiac death.
https://www.ncbi.nlm.nih.gov/pubmed/23538271
ICD10CM:I49.8
MESH:D053840
OMIM:PS601144
ORDO:130
UMLS_CUI:C1142166
UMLS_CUI:C1721096
Bangungut
Brugada type idiopathic ventricular fibrillation
Dream disease
Pokkuri death syndrome
SUNDS
sudden unexplained nocturnal death syndrome
disease_ontology
DOID:0050451
OMIM mapping confirmed by DO. [SN].
Brugada syndrome
true
A congenital nervous system abnormality characterized by the absence of folds in the cerebral cortex and caused_by defective neuronal migration during the 12th to 24th weeks of gestation.
GARD:12291
ICD10CM:Q04.3
ICD10CM:Q04.8
MESH:D054082
NCI:C103921
OMIM:300067
OMIM:300215
OMIM:607432
OMIM:611603
OMIM:614019
OMIM:615191
ORDO:102009
SNOMEDCT_US_2018_03_01:23024003
UMLS_CUI:C0266463
UMLS_CUI:C0266483
Lissencephaly is a malformation of cortical development, where there is deficient gyration (folding) in the cerebral cortex, resulting in absent gyri (agyria) and/or broad simple gyri (pachygyria).
disease_ontology
DOID:0050453
Xref MGI.
OMIM mapping confirmed by DO. [SN].
lissencephaly
true
Lissencephaly is a malformation of cortical development, where there is deficient gyration (folding) in the cerebral cortex, resulting in absent gyri (agyria) and/or broad simple gyri (pachygyria).
https://www.epilepsydiagnosis.org/aetiology/lissencephaly-overview.html
A chromosomal deletion syndrome that is characterized by distinct craniofacial features, hypotonia and intellectual disability and has_material_basis_in a microdeletion of the short arm of chromosome 4.
DOID:6684
GARD:7896
ICD10CM:Q93.3
MESH:D054877
NCI:C35528
OMIM:194190
ORDO:280
SNOMEDCT_US_2018_03_01:17122004
UMLS_CUI:C0796117
UMLS_CUI:C1956097
Wolf-Hirschhorn syndrome results from the partial deletion of the short arm of chromosome 4. The abnormality results in developmental delay, intellectual impairment (severe), hypotonia and epilepsy, and a number of dysmorphic features (microcephaly, micrognathia, short philtrum, epicanthic folds, high forehead, prominent glabella, ocular hypertelorism, dysplastic ears and peri-auricular tags). The nose may have a 'Greek helmet' appearance. There may also be congenital heart defects, hypospadias, colobomata of the iris, renal anomalies, cleft lip and/or palate and deafness. Immune disorders including common variable immunodeficiency and IgA deficiency may occur. Neuroimaging may show abnormalities of the corpus callosum or cerebellum, or other abnormality. Most cases are sporadic, with 10% inherited from a parent with a translocation. Seizures occur in the majority (>90%), typically starting in the first three years of life, with generalized tonic-clonic or hemiclonic seizures facilitated by fever (resulting in seizure clusters or status epilepticus) seen at that time. Epileptic spasms, atypical absences and focal seizures may also occur. EEG patterns of two types are recognized - diffuse, atypical slow sharp/spike-and-wave complexes in long bursts activated by slow wave sleep or high amplitude fast spike/polyspike-and-wave with posterior emphasis, triggered by eye closure. Seizures are usually well-controlled with monotherapy and improve with age. Routine karyotype assessment may not allow diagnosis of this syndrome, FISH analysis with sub-telomeric region-specific probes or CGH microarray are usually necessary.
4p deletion syndrome
PITT SYNDROME
Pitt-Rogers-Danks Syndrome
Wolf-Hirschhorn syndrome (del 4p)
chromosome 4p16.3 deletion syndrome
disease_ontology
DOID:0050460
OMIM mapping confirmed by DO. [LS].
Wolf-Hirschhorn syndrome
true
true
Wolf-Hirschhorn syndrome results from the partial deletion of the short arm of chromosome 4. The abnormality results in developmental delay, intellectual impairment (severe), hypotonia and epilepsy, and a number of dysmorphic features (microcephaly, micrognathia, short philtrum, epicanthic folds, high forehead, prominent glabella, ocular hypertelorism, dysplastic ears and peri-auricular tags). The nose may have a 'Greek helmet' appearance. There may also be congenital heart defects, hypospadias, colobomata of the iris, renal anomalies, cleft lip and/or palate and deafness. Immune disorders including common variable immunodeficiency and IgA deficiency may occur. Neuroimaging may show abnormalities of the corpus callosum or cerebellum, or other abnormality. Most cases are sporadic, with 10% inherited from a parent with a translocation. Seizures occur in the majority (>90%), typically starting in the first three years of life, with generalized tonic-clonic or hemiclonic seizures facilitated by fever (resulting in seizure clusters or status epilepticus) seen at that time. Epileptic spasms, atypical absences and focal seizures may also occur. EEG patterns of two types are recognized - diffuse, atypical slow sharp/spike-and-wave complexes in long bursts activated by slow wave sleep or high amplitude fast spike/polyspike-and-wave with posterior emphasis, triggered by eye closure. Seizures are usually well-controlled with monotherapy and improve with age. Routine karyotype assessment may not allow diagnosis of this syndrome, FISH analysis with sub-telomeric region-specific probes or CGH microarray are usually necessary.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#wolf
A childhood electroclinical syndrome that is characterized by frequent seizures and intellectual disability that present in early childhood.
GARD:9912
OMIM:606369
ORDO:2382
This syndrome is characterized by the presence multiple types of intractable seizures (in particular tonic seizures in sleep, but atonic and atypical absence seizures also occur), cognitive and behavioral impairments and diffuse slow spike-and-wave and paroxysms of fast activity on EEG.
Lennox syndrome
disease_ontology
DOID:0050561
Lennox-Gastaut syndrome
true
This syndrome is characterized by the presence multiple types of intractable seizures (in particular tonic seizures in sleep, but atonic and atypical absence seizures also occur), cognitive and behavioral impairments and diffuse slow spike-and-wave and paroxysms of fast activity on EEG.
https://www.epilepsydiagnosis.org/syndrome/lgs-overview.html
An infancy electroclinical syndrome that is characterized by infantile spasms, hypsarrhythmia on electroencephalogram and intellectual disability.
GARD:7887
MESH:D013036
NCI:C84788
ORDO:3451
West syndrome is characterized by the onset of epileptic spasms, typically in the first year of life. Global developmental impairment (with or without regression) is typically seen.
disease_ontology
Infantile spasms syndrome
DOID:0050562
West syndrome
true
true
true
West syndrome is characterized by the onset of epileptic spasms, typically in the first year of life. Global developmental impairment (with or without regression) is typically seen.
https://www.epilepsydiagnosis.org/syndrome/west-syndrome-overview.html
An intestinal disease characterized by inflammation located_in all parts of digestive tract.
EFO:0003767
KEGG:05321
MESH:D015212
NCI:C3138
OMIM:PS266600
SNOMEDCT_US_2018_03_01:24526004
UMLS_CUI:C0021390
disease_ontology
DOID:0050589
Xref MGI.
OMIM mapping confirmed by DO. [SN].
inflammatory bowel disease
A sleep disorder that involves an altered circadian rhythm resulting in falling asleep in early evening and awaking very early in the morning.
OMIM:PS604348
ORDO:164736
familial advanced sleep-phase syndrome
disease_ontology
DOID:0050628
Xref MGI.
advanced sleep phase syndrome
http://www.case.edu/EpSO.owl#AdvancedSleepPhaseSyndrome
A hemiplegia characterized by recurrent episodes of temporary weakness or complete paralysis on one or both sides of the body.
GARD:11
ICD10CM:G98
MESH:C536589
OMIM:104290
OMIM:614820
ORDO:2131
Alternating hemiplegia of childhood is a rare disorder, with onset in the first year of life, characterised by recurrent attacks of hemiplegia affecting either side of the body. There may be bilateral weakness from the onset of episodes or during the attacks. Attacks may last minutes to more than half an hour. Other signs include nystagmus, pallor, crying, eye deviation, autonomic symptoms and dystonic and tonic elements during the episodes, with choreoathetosis between episodes. Events may be mistaken for focal seizures. Parkinsonian features may develop over time. Events may be triggered by stress, water, certain foods and exercise. Sleep allows the symptoms in an episode to resolve, however they may return 10-20 minutes after waking. Affected infants have learning disability and abnormal motor development. A significant proportion of individuals will also have focal seizures. The vast majority of individuals (about 80%), have mutations in the ATP1A3 gene.
AHC
Alternating hemiplegia
disease_ontology
DOID:0050635
Xref MGI.
OMIM mapping confirmed by DO. [SN].
alternating hemiplegia of childhood
true
Alternating hemiplegia of childhood is a rare disorder, with onset in the first year of life, characterised by recurrent attacks of hemiplegia affecting either side of the body. There may be bilateral weakness from the onset of episodes or during the attacks. Attacks may last minutes to more than half an hour. Other signs include nystagmus, pallor, crying, eye deviation, autonomic symptoms and dystonic and tonic elements during the episodes, with choreoathetosis between episodes. Events may be mistaken for focal seizures. Parkinsonian features may develop over time. Events may be triggered by stress, water, certain foods and exercise. Sleep allows the symptoms in an episode to resolve, however they may return 10-20 minutes after waking. Affected infants have learning disability and abnormal motor development. A significant proportion of individuals will also have focal seizures. The vast majority of individuals (about 80%), have mutations in the ATP1A3 gene.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#alt-hemiplegia
A heart disease and a myopathy that is characterized by deterioration of the function of the heart muscle.
lschriml
2012-01-03T02:54:11Z
ICD10CM:I42
ICD10CM:I42.9
ICD10CM:I51.5
ICD9CM:425
ICD9CM:425.9
MESH:D009202
NCI:C34830
NCI:C53654
SNOMEDCT_US_2018_03_01:20072003
SNOMEDCT_US_2018_03_01:57809008
SNOMEDCT_US_2018_03_01:85898001
SNOMEDCT_US_2018_03_01:89461002
SNOMEDCT_US_2018_03_01:89600009
UMLS_CUI:C0033141
UMLS_CUI:C0036529
UMLS_CUI:C0878544
Cardiomyopathies
disease_ontology
DOID:0050700
MESH:D009202 added from NeuroDevNet [WAK].
cardiomyopathy
https://www.epilepsy.com/learn/professionals/co-existing-disorders/cardiac-disorders
true
A neonatal period electroclinical syndrome that is characterized by tonic spasms and partial seizures.
lschriml
2012-05-10T10:02:58Z
DOID:2481
GARD:9255
OMIM:PS308350
ORDO:1934
Ohtahara syndrome (also known as early infantile epileptic encephalopathy, EIEE) is a syndrome characterized by frequent intractable seizures and severe early encephalopathy resulting in limited development and reduced life expectancy. Tonic seizures predominate, myoclonic seizures are uncommon, distinguishing this syndrome from early myoclonic encephalopathy. Treatable metabolic etiologies (especially pyridoxine and pyridoxal-5-phosphate disorders) should be excluded early.
Early Infantile Epileptic Encephalopathy with Burst-Suppression
Ohtahara syndrome
disease_ontology
DOID:0050709
early infantile epileptic encephalopathy
true
true
true
Ohtahara syndrome (also known as early infantile epileptic encephalopathy, EIEE) is a syndrome characterized by frequent intractable seizures and severe early encephalopathy resulting in limited development and reduced life expectancy. Tonic seizures predominate, myoclonic seizures are uncommon, distinguishing this syndrome from early myoclonic encephalopathy. Treatable metabolic etiologies (especially pyridoxine and pyridoxal-5-phosphate disorders) should be excluded early.
https://www.epilepsydiagnosis.org/syndrome/ohtahara-overview.html
An autosomal genetic disease that is characterized by the presence of one disease-associated mutation of a gene which is sufficient to cause the disease.
lschriml
2012-07-24T12:51:47Z
disease_ontology
DOID:0050736
autosomal dominant disease
A monogenic disease that has_material_basis_in a mutation in a single gene on one of the non-sex chromosomes.
lschriml
2012-07-24T04:45:53Z
disease_ontology
DOID:0050739
autosomal genetic disease
A substance dependence that is characterized by tolerance, withdrawal symptoms, increasing use, persistent desire to decrease consumption, time spent obtaining or recovering from alcohol caused by a physical and psychological dependence on alcohol.
lschriml
2012-09-05T11:48:42Z
https://www.ncbi.nlm.nih.gov/pubmed/14594442
EFO:0003829
KEGG:05034
OMIM:103780
SNOMEDCT_US_2018_03_01:66590003
alcoholism
disease_ontology
DOID:0050741
alcohol dependence
true
A substance dependence that is characterized by a physical dependence on nicotine.
lschriml
2012-09-05T11:48:42Z
https://www.ncbi.nlm.nih.gov/pubmed/24441294
EFO:0003768
ICD10CM:F17
ICD10CM:F17.2
ICD10CM:F17.20
MESH:D014029
NCI:C54203
SNOMEDCT_US_2018_03_01:56294008
UMLS_CUI:C0028043
Nicotine use
tobacco use disorder
disease_ontology
DOID:0050742
nicotine dependence
true
A vascular disease that is located_in an artery.
lschriml
2014-02-12T03:08:35Z
disease_ontology
DOID:0050828
artery disease
A sleep disorder characterized by repeated cessation and commencing of breathing that repeatedly disrupts sleep.
lschriml
2014-03-20T03:57:22Z
ICD10CM:G47.3
ICD10CM:G47.30
ICD9CM:780.57
MESH:D012891
NCI:C26884
SNOMEDCT_US_2018_03_01:73430006
UMLS_CUI:C0037315
disease_ontology
DOID:0050847
sleep apnea
A sleep apnea that is characterized by repeated collapse and obstruction of the upper airway during sleep, which results in reduced airflow (hypopnea) or complete airflow cessation (apnea), oxygen desaturation, and arousals from sleep.
lschriml
2014-03-20T03:57:22Z
https://www.ncbi.nlm.nih.gov/books/NBK1169/#adnfle.Clinical_Characteristics
ICD10CM:G47.33
ICD9CM:327.23
MESH:D020181
NCI:C116337
NCI:C27168
OMIM:107650
SNOMEDCT_US_2018_03_01:78275009
UMLS_CUI:C0520679
obstructive sleep apnea syndrome
disease_ontology
DOID:0050848
Xref MGI.
obstructive sleep apnea
http://www.case.edu/EpSO.owl#ObstructiveSleepApnea
true
A neurodegenerative disease that is characterized by slowly progressive incoordination of gait and often associated with poor coordination of hands, speech, and eye movements.
lschriml
2015-10-05T14:38:17Z
GARD:6614
disease_ontology
DOID:0050951
hereditary ataxia
An episodic ataxia that is characterized by periodic ataxia and frequent myokymic discharges, and has_material_basis_in autosomal dominant inheritance of mutation in the potassium channel gene KCNA1.
lschriml
2015-10-06T16:26:26Z
OMIM:160120
Episodic ataxia 1 is associated with mutations in a potassium ion channel gene KCNA1. Brief episodes of cerebellar ataxia lasting seconds or minutes are triggered by sudden movements, emotion or intercurrent illness.
disease_ontology
DOID:0050989
episodic ataxia type 1
true
Episodic ataxia 1 is associated with mutations in a potassium ion channel gene KCNA1. Brief episodes of cerebellar ataxia lasting seconds or minutes are triggered by sudden movements, emotion or intercurrent illness.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#episodic-ataxias
An episodic ataxia that is characterized by periodic ataxia and nystagmus, and has_material_basis_in autosomal dominant inheritance of mutation in the calcium channel gene CACNA1A.
lschriml
2015-10-06T16:26:26Z
https://www.ncbi.nlm.nih.gov/pubmed/27025991
OMIM:108500
EA2 is characterised by periods of cerebellar ataxia lasting minutes to hours, which are triggered by physical and emotional stress. Gait and upper limb ataxia may be accompanied by dysarthria, nystagmus, vertigo, nausea and headache. EA2 can be distinguished from seizures by recognition of triggers, family history and retention of awareness during events. EA2 is associated with mutations in the calcium ion channel gene CACNA1A. Variants in this gene are associated with familial hemiplegic migraine and spinocerebellar ataxia type 6 and some phenotypic overlap with these disorders may occur. There may be gaze-evoked nystagmus in between episodes and over time vertical nystagmus may develop.
disease_ontology
DOID:0050990
episodic ataxia type 2
true
true
EA2 is characterised by periods of cerebellar ataxia lasting minutes to hours, which are triggered by physical and emotional stress. Gait and upper limb ataxia may be accompanied by dysarthria, nystagmus, vertigo, nausea and headache. EA2 can be distinguished from seizures by recognition of triggers, family history and retention of awareness during events. EA2 is associated with mutations in the calcium ion channel gene CACNA1A. Variants in this gene are associated with familial hemiplegic migraine and spinocerebellar ataxia type 6 and some phenotypic overlap with these disorders may occur. There may be gaze-evoked nystagmus in between episodes and over time vertical nystagmus may develop.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#episodic-ataxias
An autoimmune hypersensitivity disease located_in the central nervous system.
disease_ontology
DOID:0060004
autoimmune disease of central nervous system
An autoimmune hypersensitivity disease that is the abnormal functioning of the immune system that causes your immune system to produce antibodies or T cells against cells and/or tissues in the gastrointestinal tract.
disease_ontology
DOID:0060031
autoimmune disease of gastrointestinal tract
An autoimmune hypersensitivity disease that is the abnormal functioning of the immune system that causes your immune system to produce antibodies or T cells against cells and/or tissues in the musculoskeletal system.
disease_ontology
DOID:0060032
autoimmune disease of musculoskeletal system
An autoimmune disease of the nervous system that is the abnormal functioning of the immune system that causes your immune system to produce antibodies or T cells against cells and/or tissues in the peripheral nervous system.
disease_ontology
DOID:0060033
autoimmune disease of peripheral nervous system
A cardiomyopathy that is characterized as weakness in the muscle of the heart that is not due to an identifiable external cause.
https://www.ncbi.nlm.nih.gov/pubmed/31327513
disease_ontology
DOID:0060036
intrinsic cardiomyopathy
true
A disease of mental health that occur during a child's developmental period between birth and age 18 resulting in retarding of the child's psychological or physical development.
disease_ontology
DOID:0060037
developmental disorder of mental health
A developmental disorder of mental health that categorizes specific learning disabilities and developmental disorders affecting coordination.
disease_ontology
DOID:0060038
specific developmental disorder
An autoimmune hypersensitivity disease that is the abnormal functioning of the immune system that causes your immune system to produce antibodies or T cells against cells and/or tissues in the skin and connective tissue.
disease_ontology
DOID:0060039
autoimmune disease of skin and connective tissue
A developmental disorder of mental health that refers to a group of five disorders characterized by impairments in socialization and communication, as well as restricted interests and repetitive behaviors.
DOID:1208
ICD9CM:299.80
UMLS_CUI:C0154451
pervasive development disorder
disease_ontology
DOID:0060040
pervasive developmental disorder
A pervasive developmental disorder that is a spectrum of psychological conditions. The disease has_symptom widespread abnormalities of social interactions and communication, has_symptom severely restricted interests and has_symptom highly repetitive behavior.
https://www.ncbi.nlm.nih.gov/pubmed/30691036
GARD:10248
MESH:D000067877
disease_ontology
DOID:0060041
autism spectrum disorder
http://www.case.edu/EpSO.owl#AutismSpectrumDisorder
true
true
A disease of mental health that involves the impairment in normal sexual functioning.
https://www.ncbi.nlm.nih.gov/pubmed/28775613
disease_ontology
DOID:0060043
sexual disorder
true
A learning disability that involves impaired written language ability such as impairments in handwriting, spelling, organization of ideas, and composition.
disease_ontology
DOID:0060047
writing disorder
An immune system disease that has_material_basis_in abnormal immune responses.
disease_ontology
DOID:0060056
hypersensitivity reaction disease
A disease of cellular proliferation that results in abnormal growths in the body which lack the ability to metastasize.
lschriml
2011-05-11T12:18:41Z
disease_ontology
DOID:0060072
benign neoplasm
A benign neoplasm that is classified by the type of cell or tissue from which it is derived.
lschriml
2011-07-14T11:59:48Z
disease_ontology
DOID:0060084
cell type benign neoplasm
A benign neoplasm that is classified by the organ system from which it is arising from.
lschriml
2011-07-14T12:12:23Z
disease_ontology
DOID:0060085
organ system benign neoplasm
A central nervous system benign neoplasm that is characterized by lack of malignancy.
lschriml
2011-07-14T01:45:15Z
disease_ontology
DOID:0060090
central nervous system benign neoplasm
An organ system benign neoplasm disease located_in the blood, heart, blood vessels or the lymphatic system.
lschriml
2011-07-14T01:45:15Z
disease_ontology
DOID:0060091
cardiovascular organ benign neoplasm
A brain cancer that has_material_basis_in glial cells.
lschriml
2011-07-22T12:42:50Z
lower grade glioma
disease_ontology
Low Grade Glioma
DOID:0060108
brain glioma
http://www.case.edu/EpSO.owl#LowGradeGlioma
An organ system benign neoplasm that is located_in the central nervous system or located_in the peripheral nervous system.
lschriml
2011-07-25T12:47:43Z
disease_ontology
DOID:0060115
nervous system benign neoplasm
An agnosia that is a loss of the ability to visually recognize objects.
lschriml
2011-08-22T12:04:56Z
https://www.ncbi.nlm.nih.gov/pubmed/29237192
MESH:C531604
UMLS_CUI:C2930796
disease_ontology
DOID:0060155
visual agnosia
http://www.case.edu/EpSO.owl#VisualAgnosia
true
A disease of metabolism that has _material_basis_in enzyme deficiency or accumulation of enzymes or toxins which interfere with normal function due to an endocrine organ disease, organ malfunction, inadequate intake, dietary deficiency, or malabsorption.
lschriml
2011-08-24T02:53:03Z
disease_ontology
DOID:0060158
acquired metabolic disease
An infancy electroclinical syndrome that is characterized by convulsions, with onset at age 3 to 12 months.
lschriml
2011-10-28T02:55:02Z
https://www.ncbi.nlm.nih.gov/pubmed/12503648
GARD:1518
GARD:857
OMIM:601764
OMIM:605751
OMIM:607745
OMIM:612627
ORDO:306
BFIC
BFIE
Benign familial infantile seizures
benign familial infantile convulsion
benign familial infantile seizures
disease_ontology
DOID:0060169
Xref MGI.
benign familial infantile epilepsy
true
An adolescence-adult electroclinical syndrome statring between the age of ten to 17 years characterized by the occurrence of typical absence seizures.
lschriml
2011-11-08T10:42:18Z
This genetic/idiopathic generalized epilepsy is characterized by absence seizures that are not very frequent in an otherwise normal adolescent or adult. Generalized tonic-clonic seizures typically also occur. With absence seizures in a child aged between 8 and 12 years, a diagnosis of juvenile absence epilepsy or childhood absence epilepsy depends on the frequency of the absence seizures.
disease_ontology
DOID:0060172
JA:Epilepsy Genetics Kiel
juvenile absence epilepsy
http://www.case.edu/EpSO.owl#JuvenileAbsenceEpilepsy
true
true
This genetic/idiopathic generalized epilepsy is characterized by absence seizures that are not very frequent in an otherwise normal adolescent or adult. Generalized tonic-clonic seizures typically also occur. With absence seizures in a child aged between 8 and 12 years, a diagnosis of juvenile absence epilepsy or childhood absence epilepsy depends on the frequency of the absence seizures.
https://www.epilepsydiagnosis.org/syndrome/jae-overview.html
A migraine with aura that is characterized by temporary numbness or weakness, often affecting one side of the body (hemiparesis). Additional features of an aura can include difficulty with speech, confusion, and drowsiness.
lschriml
2011-11-08T02:54:32Z
GARD:10975
ICD10CM:G43.8
ICD9CM:346.8
ORDO:569
UMLS_CUI:C0477373
Familial hemiplegic migraine is a subtype of migraine with aura in which focal weakness with or without speech disturbance, visual symptoms and paraesthesia develop prior to the onset of headache. Confusion and, in rare severe cases, coma may accompany weakness.
disease_ontology
DOID:0060178
Xref MGI.
familial hemiplegic migraine
true
Familial hemiplegic migraine is a subtype of migraine with aura in which focal weakness with or without speech disturbance, visual symptoms and paraesthesia develop prior to the onset of headache. Confusion and, in rare severe cases, coma may accompany weakness.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#fam-hemimigraine
A language disorder characterized by difficulty in language acquisition despite otherwise normal development and in the absence of any obvious explanatory factors.
emitraka
2015-01-28T16:29:51Z
https://www.ncbi.nlm.nih.gov/pubmed/15797356
OMIM:606711
OMIM:606712
OMIM:607134
OMIM:612514
OMIM:615432
language impairment
disease_ontology
DOID:0060244
NT MGI.
specific language impairment
true
An epilepsy characterized by seizures triggered by visual stimuli that form patterns in space or time, such as flashing lights.
emitraka
2015-02-04T16:15:55Z
GARD:5648
ICD10CM:G40.8
OMIM:132100
OMIM:609572
OMIM:609573
ORDO:166409
photogenic epilepsy
photoparoxysmal response
disease_ontology
DOID:0060281
NT MGI.
photosensitive epilepsy
https://www.epilepsysociety.org.uk/photosensitive-epilepsy#.Xl9_lqgzbIV
true
A congestive heart failure characterized by a sudden stop in effective blood circulation due to the failure of the heart to contract effectively or at all.
emitraka
2015-02-25T15:12:30Z
https://www.ncbi.nlm.nih.gov/pubmed/22916156
ICD10CM:I46
ICD9CM:427.5
MESH:D006323
NCI:C50479
NCI:C50483
SNOMEDCT_US_2018_03_01:30298009
UMLS_CUI:C0018790
UMLS_CUI:C0600228
cardiopulmonary arrest
circulatory arrest
disease_ontology
Cardiac asystole
Sudden cardiac arrest
DOID:0060319
cardiac arrest
https://www.epilepsy.com/learn/professionals/co-existing-disorders/cardiac-disorders
true
true
A spina bifida characterized by protrusion of the spinal cord through an opening, covered by meningeal membranes.
emitraka
2015-02-25T17:47:25Z
https://www.ncbi.nlm.nih.gov/pubmed/20430655
ICD10CM:Q05
MESH:D008591
NCI:C101201
NCI:C98874
SNOMEDCT_US_2018_03_01:7096005
SNOMEDCT_US_2018_03_01:82058009
UMLS_CUI:C0025312
UMLS_CUI:C0086664
UMLS_CUI:C0751316
disease_ontology
DOID:0060326
myelomeningocele
true
A chromosomal deletion syndrome that is characterized by intellectual dsability, developmental delay, autism spectrum disorder and seizure, has_material_basis_in autosomal dominant inheritance of partial deletion of the long arm of chromosome 15.
elvira
2015-09-28T16:23:21Z
GARD:10296
ICD10CM:Q93.5
MESH:C567439
OMIM:612001
ORDO:199318
This chromosomal abnormality is associated with intellectual impairment, developmental delay and epilepsy. Seizures of various types may occur, however these are typically generalized (myoclonic, absence and generalized tonic-clonic). Dysmorphic features may include everted lips, deep-set eyes, upslanting palpebral fissures, hypertelorism, synophris, prominent philtrum and hypotonic facies. A CGH microarray is usually the most useful diagnostic test.
15q13.3 microdeletion syndrome
disease_ontology
DOID:0060394
chromosome 15q13.3 microdeletion syndrome
true
This chromosomal abnormality is associated with intellectual impairment, developmental delay and epilepsy. Seizures of various types may occur, however these are typically generalized (myoclonic, absence and generalized tonic-clonic). Dysmorphic features may include everted lips, deep-set eyes, upslanting palpebral fissures, hypertelorism, synophris, prominent philtrum and hypotonic facies. A CGH microarray is usually the most useful diagnostic test.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#15q13
elvira
2015-09-28T17:05:53Z
ICD10CM:Q93.5
MESH:C536580
OMIM:601808
ORDO:1600
This chromosomal abnormality is associated with intellectual impairment (moderate-severe), behavioral disorder, epilepsy and dysmorphic features including microcephaly, turricephaly, deep-set-eyes, broad nasal bridge, high arched or cleft palate, carp shaped mouth and small hands and feet. Cardiac defects may occur. Neuroimaging shows abnormal myelination, and may show cerebellar hypoplasia. Seizures are of early onset and seizures with focal autonomic seizures features are common (which may result in cardiac arrhythmia and apnoea). It is notable that this chromosome deletion may include the TCF4 gene, which is mutated in Pitt Hopkins Syndrome.
18q- syndrome
deletion 18q
monosomy 18q
disease_ontology
DOID:0060407
chromosome 18q deletion syndrome
true
This chromosomal abnormality is associated with intellectual impairment (moderate-severe), behavioral disorder, epilepsy and dysmorphic features including microcephaly, turricephaly, deep-set-eyes, broad nasal bridge, high arched or cleft palate, carp shaped mouth and small hands and feet. Cardiac defects may occur. Neuroimaging shows abnormal myelination, and may show cerebellar hypoplasia. Seizures are of early onset and seizures with focal autonomic seizures features are common (which may result in cardiac arrhythmia and apnoea). It is notable that this chromosome deletion may include the TCF4 gene, which is mutated in Pitt Hopkins Syndrome.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#18q-
elvira
2015-09-28T17:14:10Z
GARD:6082
MESH:C535362
NCI:C74983
OMIM:607872
ORDO:1606
UMLS_CUI:C1842870
This chromosomal abnormality results in intellectual impairment (moderate to severe), epilepsy and multiple congenital abnormalities. Dysmorphic features include microcephaly, brachycephaly, large and late-closing anterior fontanelle, prominent forehead, straight (horizontal) eyebrows, deep-set eyes, short palpebral fissure, broad nasal bridge, midface hypoplasia, hypotonic facies, low-set abnormal ears, pointed chin and shortened hands and feet. Sensorineural hearing loss, skeletal, urogenital and cardiac defects may occur. Neuroimaging may show a range of structural brain abnormalities. Seizures occur in >50% of cases, typically starting in infancy or childhood with many types of seizures seen, including epileptic spasms, generalized and focal seizures. Seizures may cluster during febrile illness. Some patients may have Ohtahara syndrome. Seizure control is usually not difficult to achieve. Routine karyotype assessment may not allow diagnosis of this syndrome, FISH analysis with sub-telomeric region-specific probes or CGH microarray are usually necessary.
1p36 deletion syndrome
deletion 1p36
monosomy 1p36
disease_ontology
subtelomeric 1p36 deletion
DOID:0060410
chromosome 1p36 deletion syndrome
true
This chromosomal abnormality results in intellectual impairment (moderate to severe), epilepsy and multiple congenital abnormalities. Dysmorphic features include microcephaly, brachycephaly, large and late-closing anterior fontanelle, prominent forehead, straight (horizontal) eyebrows, deep-set eyes, short palpebral fissure, broad nasal bridge, midface hypoplasia, hypotonic facies, low-set abnormal ears, pointed chin and shortened hands and feet. Sensorineural hearing loss, skeletal, urogenital and cardiac defects may occur. Neuroimaging may show a range of structural brain abnormalities. Seizures occur in >50% of cases, typically starting in infancy or childhood with many types of seizures seen, including epileptic spasms, generalized and focal seizures. Seizures may cluster during febrile illness. Some patients may have Ohtahara syndrome. Seizure control is usually not difficult to achieve. Routine karyotype assessment may not allow diagnosis of this syndrome, FISH analysis with sub-telomeric region-specific probes or CGH microarray are usually necessary.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#del
A syndrome characterized by classical lissencephaly and distinct facial features and has_material_basis_in submicroscopic deletions of 17p13.3, including the LIS1 gene.
elvira
2015-11-17T16:22:00Z
ICD10CM:Q93.88
MESH:D054221
NCI:C124852
OMIM:247200
ORDO:531
SNOMEDCT_US_2018_03_01:43849007
UMLS_CUI:C0265219
This clinical syndrome may arise from a microdeletion in chromosome 17p (17p13.3 microdeletion) or from other chromosomal abnormalities (e.g. translocations, ring chromosome, contiguous deletions) affecting 17p. The LIS1 gene is located on 17p and this syndrome includes the presence of classical (type 1) lissencephaly. The children have distinctive facial features with a short upturned nose, thickened upper lip with a thin vermillion upper border, frontal bossing, small jaw, low-set posteriorly rotated ears, sunken appearance in the middle of the face, widely spaced eyes, and hypertelorism. The forehead is prominent with bitemporal hollowing. Most (80%) of cases are sporadic, with 20% of cases inherited from an unaffected parent with a balanced translocation. Renal malformations and omphalocele have also been reported.
MDS
Miller dieker syndrome (del 17p)
Miller-Dieker syndrome
disease_ontology
DOID:0060469
Miller-Dieker lissencephaly syndrome
true
This clinical syndrome may arise from a microdeletion in chromosome 17p (17p13.3 microdeletion) or from other chromosomal abnormalities (e.g. translocations, ring chromosome, contiguous deletions) affecting 17p. The LIS1 gene is located on 17p and this syndrome includes the presence of classical (type 1) lissencephaly. The children have distinctive facial features with a short upturned nose, thickened upper lip with a thin vermillion upper border, frontal bossing, small jaw, low-set posteriorly rotated ears, sunken appearance in the middle of the face, widely spaced eyes, and hypertelorism. The forehead is prominent with bitemporal hollowing. Most (80%) of cases are sporadic, with 20% of cases inherited from an unaffected parent with a balanced translocation. Renal malformations and omphalocele have also been reported.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#millerdieker
A hypersensitivity reaction type I disease triggered by a drug.
https://www.ncbi.nlm.nih.gov/pubmed/1831121
disease_ontology
Allergic rash
DOID:0060500
drug allergy
true
A frontal lobe epilepsy that is characterized by autosomal dominant inheritance with childhood onset of clusters of brief nocturnal motor seizures with hyperkinetic or tonic manifestations.
https://www.ncbi.nlm.nih.gov/books/NBK83677/
GARD:11918
OMIM:PS600513
ORDO:98784
Autosomal dominant nocturnal frontal lobe epilepsy is a familial epilepsy with focal seizures beginning most commonly in childhood, although sporadic cases may occur. Brief nocturnal frontal lobe seizures with hyperkinetic, tonic or dystonic motor features are seen. Treatment with low dose carbamazepine is effective, however 30% of cases are resistant to treatment. Interictal EEG is often normal but may show anterior epileptiform abnormalities, typically in sleep. Mutations have been identified in genes coding for different subunits of the neuronal nicotinic acetylcholine receptors in 15% of familial cases, and in some sporadic cases.
ADNFLE
ENFL
disease_ontology
DOID:0060681
autosomal dominant nocturnal frontal lobe epilepsy
http://www.case.edu/EpSO.owl#AutosomalDominantNocturnalFrontalLobeEpilepsy
true
Autosomal dominant nocturnal frontal lobe epilepsy is a familial epilepsy with focal seizures beginning most commonly in childhood, although sporadic cases may occur. Brief nocturnal frontal lobe seizures with hyperkinetic, tonic or dystonic motor features are seen. Treatment with low dose carbamazepine is effective, however 30% of cases are resistant to treatment. Interictal EEG is often normal but may show anterior epileptiform abnormalities, typically in sleep. Mutations have been identified in genes coding for different subunits of the neuronal nicotinic acetylcholine receptors in 15% of familial cases, and in some sporadic cases.
https://www.epilepsydiagnosis.org/syndrome/adnfle-overview.html
A connective tissue disease that affects the structure or development of bone or causes an impairment of normal bone function.
DOID:1290
ICD10CM:M89.9
MESH:D001847
SNOMEDCT_US_2018_03_01:76069003
UMLS_CUI:C0005940
disease_ontology
skeletal disease
DOID:0080001
bone disease
A disease that has_material_basis_in a genetic abnormality, error with embryonic development, infection or compromised intrauterine environment.
disease_ontology
DOID:0080015
physical disorder
https://www.ncbi.nlm.nih.gov/pubmed/20430655
GARD:7673
MESH:D016135
disease_ontology
DOID:0080016
spina bifida
true
lschriml
2015-10-19T14:41:42Z
GARD:4016
OMIM:301410
OMIM:601634
disease_ontology
DOID:0080074
neural tube defect
A mitochondrial DNA depletion syndrome that is characterized by a clinical triad of psychomotor retardation, intractable epilepsy, and liver failure in infants and young children, and has_material_basis_in autosomal recessive inheritance of homozygous or compound heterozygous mutation in the nuclear gene encoding mitochondrial DNA polymerase gamma on chromosome 15q26.
DOID:1442
GARD:5783
ICD10CM:G31.81
MESH:D002549
MTHICD9_2006:330.8
NCI:C35257
OMIM:203700
ORDO:726
SNOMEDCT_US_2018_03_01:20415001
UMLS_CUI:C0205710
Intractable seizures with status epilepticus and epilepsia partialis continua occur, with developmental regression and liver dysfunction. Caused by mutations in POLG.
Alper's syndrome
Alpers disease
Alpers progressive infantile poliodystrophy
Alpers syndrome
Alpers' disease or gray-matter degeneration
Alpers-Huttenlocher syndrome
progressive sclerosing poliodystrophy
disease_ontology
DOID:0080122
mitochondrial DNA depletion syndrome 4a
true
Intractable seizures with status epilepticus and epilepsia partialis continua occur, with developmental regression and liver dysfunction. Caused by mutations in POLG.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#mitochondrial
An early infantile epileptic encephalopathy that has_material_basis_in heterozygous mutation in the SCN1A gene on chromosome 2q24.
DOID:0060171
GARD:10430
OMIM:607208
ORDO:33069
Dravet syndrome (previously known as severe myoclonic epilepsy of infancy, SMEI), typically presents in the first year of life in a normal child with prolonged, febrile and afebrile, focal (usually hemiclonic) and generalized tonic-clonic seizures. Other seizure types including myoclonic and atypical absence seizures appear between the age of 1 and 4 years. Seizures are usually intractable and from the second year of life children demonstrate cognitive and behaviour impairments. The clinical diagnosis is supported by the presence of abnormalities in the sodium channel gene SCN1A (found in 75% of cases).
early infantile epileptic encephalopathy 6
disease_ontology
DOID:0080422
Dravet syndrome
true
Dravet syndrome (previously known as severe myoclonic epilepsy of infancy, SMEI), typically presents in the first year of life in a normal child with prolonged, febrile and afebrile, focal (usually hemiclonic) and generalized tonic-clonic seizures. Other seizure types including myoclonic and atypical absence seizures appear between the age of 1 and 4 years. Seizures are usually intractable and from the second year of life children demonstrate cognitive and behaviour impairments. The clinical diagnosis is supported by the presence of abnormalities in the sodium channel gene SCN1A (found in 75% of cases).
https://www.epilepsydiagnosis.org/syndrome/dravet-overview.html
A sleep disorder characterized by an extreme evening preference, sleep-onset insomnia, and difficulty in awakening at the desired time.
DSPD
disease_ontology
DOID:0111141
delayed sleep phase syndrome
http://www.case.edu/EpSO.owl#DelayedSleepPhaseSyndrome
A congenital nervous system abnormality characterized by migration of neurons to ectopic locations in the brain where the neurons form areas that appear as band-like clusters of white tissue underneath the gray tissue of the cerebral cortex.
MESH:D054221
NCI:C116933
OMIM:600348
ORDO:99796
UMLS_CUI:C1848201
Subcortical band heterotopia is a malformation of cortical development, where there is a band of cortical cells (grey matter) located between the lateral ventricular wall and the cortex. The overlying cortex has a largely normal appearance, but may have mildly shallow sulcation. It occurs due to failure of migration of a population of neuronal cells to their correct location in the cerebral cortex. Subcortical band heterotopia is typically bilateral, symmetric and anterior-predominant.Occasionally subcortical band heterotopia can be bifrontal only, or rarely biparieto-occipital. Subcortical band heterotopia usually occurs in isolation, without other associated structural brain abnormalities, though mild cerebellar hypoplasia can occur with DCX mutations.
HeCo
band heterotopia
double cortex syndrome
heterotopic cortex
subcortical laminar heterotopia
disease_ontology
DOID:0111169
subcortical band heterotopia
true
Subcortical band heterotopia is a malformation of cortical development, where there is a band of cortical cells (grey matter) located between the lateral ventricular wall and the cortex. The overlying cortex has a largely normal appearance, but may have mildly shallow sulcation. It occurs due to failure of migration of a population of neuronal cells to their correct location in the cerebral cortex. Subcortical band heterotopia is typically bilateral, symmetric and anterior-predominant.Occasionally subcortical band heterotopia can be bifrontal only, or rarely biparieto-occipital. Subcortical band heterotopia usually occurs in isolation, without other associated structural brain abnormalities, though mild cerebellar hypoplasia can occur with DCX mutations.
https://www.epilepsydiagnosis.org/aetiology/subcortical-heterotopia-overview.html
An autonomic nervous system disease characterized by onset in the neonatal period or infancy of paroxysms of rectal, ocular, or submandibular pain with flushing that has_material_basis_in heterozygous mutation in SCN9A on chromosome 2q24.3.
GARD:12854
MESH:C563475
OMIM:167400
ORDO:46348
UMLS_CUI:C1833661
Paroxysmal extreme pain disorder is a rare genetic condition associated with mutations in the sodium ion channel gene SCN9A and is characterised by paroxysms of extreme pain. It was previously known as familial rectal pain syndrome.
PEPD
PEXPD
familial rectal pain
submandibular, ocular and rectal pain with flushing
disease_ontology
DOID:0111537
paroxysmal extreme pain disorder
true
Paroxysmal extreme pain disorder is a rare genetic condition associated with mutations in the sodium ion channel gene SCN9A and is characterised by paroxysms of extreme pain. It was previously known as familial rectal pain syndrome.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#paro-extreme
A vascular disease characterized by intracranial vascular anomaly, leptomeningeal angiomatosis, facial cutaneous vascular malformations, and glaucoma that has_material_basis_in somatic mutation in GNAQ on chromosome 9q21.2.
GARD:7706
MESH:D013341
OMIM:185300
ORDO:3205
SNOMEDCT_US_2018_03_01:19886006
UMLS_CUI:C0038505
Sturge Weber syndrome is characterized by angiomas of the face, eye and leptomeninges. It is caused by an acquired somatic gene abnormality resulting in a gain of function in the GNAQ gene, in progenitor vascular cells.
SWS
Sturge-Weber-Dimitri syndrome
Sturge-Weber-Krabbe angiomatosis
Sturge-Weber-Krabbe syndrome
encephalofacial angiomatosis
encephalotrigeminal angiomatosis
fourth phacomatosis
leptomeningeal angiomatosis
meningeal capillary angiomatosis
disease_ontology
DOID:0111563
Sturge-Weber syndrome
true
Sturge Weber syndrome is characterized by angiomas of the face, eye and leptomeninges. It is caused by an acquired somatic gene abnormality resulting in a gain of function in the GNAQ gene, in progenitor vascular cells.
https://www.epilepsydiagnosis.org/aetiology/sturge-weber-overview.html
A migraine characterized by migraine headache which is preceded or accompanied by a transient focal neurological phenomenon.
DOID:10025
https://www.ncbi.nlm.nih.gov/pubmed/26198661
ICD10CM:G43.1
ICD10CM:G43.109
ICD9CM:346.0
MESH:D020325
NCI:C117005
OMIM:609179
OMIM:609670
SNOMEDCT_US_2018_03_01:4473006
UMLS_CUI:C0154723
The visual aura of migraine preceding a headache can take a variety of forms but is typically in one visual field and contains positive phenomena such as flashes, arcs of lights (fortification spectra), specks, or flames and negative phenomena such as scotoma with blanking out or greying of the visual field.
Migraine with visual aura
classic migraine
disease_ontology
DOID:10024
Xref MGI.
migraine with aura
true
true
The visual aura of migraine preceding a headache can take a variety of forms but is typically in one visual field and contains positive phenomena such as flashes, arcs of lights (fortification spectra), specks, or flames and negative phenomena such as scotoma with blanking out or greying of the visual field.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#migraine-visaura
A taeniasis that results from ingestion of eggs or larvae of the Taenia solium tapeworm in undercooked pork or fecally contaminated food or water, which subsequently infect the central nervous system, heart, muscles, subcutaneous tissues, and eyes. Neurocysticercosis causes seizures, mental disturbances, focal neurologic deficits and intracerebral lesions.
DOID:10078
DOID:14424
GARD:8194
ICD10CM:B69
ICD10CM:B69.9
ICD9CM:123.1
MESH:D003551
MTHICD9_2006:123.0
NCI:C34520
SNOMEDCT_US_2018_03_01:59051007
UMLS_CUI:C0010678
Neurocysticercosis is caused by ingestion of food contaminated with Taenia solium eggs. Eggs hatch in the intestine, larvae migrate to the central nervous system and then form cysts. Cysts have four phases: 1) vesicular (asymptomatic); 2) colloidal (degeneration and inflammation); 3) granular nodular; and 4) calcification. Although seizures are most often associated with cyst degeneration, they can occur at any stage.
Pork tapeworm infection
Tapeworm infection: intestinal taenia solum
Tapeworm infection: pork
intestinal taenia solium infection
neurocysticercosis
tenia solium infectious disease
disease_ontology
DOID:10079
cysticercosis
true
true
Neurocysticercosis is caused by ingestion of food contaminated with Taenia solium eggs. Eggs hatch in the intestine, larvae migrate to the central nervous system and then form cysts. Cysts have four phases: 1) vesicular (asymptomatic); 2) colloidal (degeneration and inflammation); 3) granular nodular; and 4) calcification. Although seizures are most often associated with cyst degeneration, they can occur at any stage.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
A trypanosomiasis that results from infection by Trypanosoma brucei and gambiense, which is transmitted by the bite of an infected tsetse fly (Glossina spp). The symptoms include fever, headache, joint pain, itching, confusion, sensory disturbances, poor coordination and sleep disturbances.
CSP2005:2214-6161
ICD10CM:B56
ICD10CM:B56.9
ICD9CM:086.5
KEGG:05143
MESH:D014353
NCI:C84541
SNOMEDCT_US_2018_03_01:27031003
SNOMEDCT_US_2018_03_01:78940002
UMLS_CUI:C0041228
African sleeping sickness
African trypanosomiasis
disease_ontology
DOID:10112
sleeping sickness
http://www.case.edu/EpSO.owl#SleepingSickness
A parasitic protozoa infectious disease that involves infection caused by parasitic protozoan of the genus Trypanosoma in animals and humans.
ICD10CM:B57.2
ICD9CM:086
ICD9CM:086.9
MESH:D014352
SNOMEDCT_US_2018_03_01:78940002
UMLS_CUI:C0041227
disease_ontology
DOID:10113
trypanosomiasis
A cardiovascular system disease that involves the heart's electrical conduction system.
ICD9CM:426.6
UMLS_CUI:C0029630
heart rhythm disease
disease_ontology
DOID:10273
heart conduction disease
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
https://www.ncbi.nlm.nih.gov/books/NBK83677/
ICD10CM:A49
ICD10CM:A49.9
MESH:D001424
NCI:C2890
SNOMEDCT_US_2018_03_01:87628006
UMLS_CUI:C0004623
Bacterial Infections
disease_ontology
DOID:104
bacterial infectious disease
true
A specific developmental disorder that involves significant limitations both in mental functioning and in adaptive behavior such as communicating, taking care of him or herself, and social skills.
https://www.ncbi.nlm.nih.gov/pubmed/28671982
MESH:D008607
NCI:C84392
SNOMEDCT_US_2018_03_01:1855002
SNOMEDCT_US_2018_03_01:91138005
UMLS_CUI:C0025362
MENTAL RETARDATION, AUTOSOMAL RECESSIVE 15
Mental Retardation
disease_ontology
mental retardation
DOID:1059
OMIM mapping submitted by NeuroDevNet. [LS].
intellectual disability
http://www.case.edu/EpSO.owl#MentalRetardation
https://www.psychiatryadvisor.com/home/topics/neurodevelopmental-disorder/intellectual-disabilities/managing-epilepsy-in-patients-with-intellectual-disability/
true
true
An autoimmune disease of gastrointestinal tract that is caused by a reaction located_in small intestine to gliadin, a prolamin (gluten protein) found in wheat, and similar proteins found in the crops of the tribe Triticeae. The disease is associated with HLA-DQ gene. It has_symptom abdominal pain, has_symptom constipation, has_symptom diarrhea, has_symptom nausea and vomiting, and has_symptom loss of appetite.
https://www.ncbi.nlm.nih.gov/pubmed/30562654
CSP2005:1248-3893
EFO:0001060
GARD:11998
ICD10CM:K90.0
ICD9CM:579.0
MESH:D002446
MTHICD9_2006:579.0
NCI:C26714
OMIM:607202
OMIM:609754
OMIM:611598
OMIM:612005
OMIM:612006
OMIM:612007
OMIM:612008
OMIM:612009
OMIM:612011
ORDO:555
SNOMEDCT_US_2018_03_01:23829007
UMLS_CUI:C0007570
celiac sprue
coeliac disease
idiopathic steatorrhea
disease_ontology
DOID:10608
Xref MGI.
OMIM mapping confirmed by DO. [SN].
celiac disease
true
true
A tauopathy that is characterized by memory lapses, confusion, emotional instability and progressive loss of mental ability and results in progressive memory loss, impaired thinking, disorientation, and changes in personality and mood starting and leads in advanced cases to a profound decline in cognitive and physical functioning and is marked histologically by the degeneration of brain neurons especially in the cerebral cortex and by the presence of neurofibrillary tangles and plaques containing beta-amyloid.
https://www.ncbi.nlm.nih.gov/pubmed/29213881
CSP2005:0485-6737
EFO:0000249
GARD:10254
ICD10CM:G30
ICD10CM:G30.9
ICD9CM:331.0
KEGG:05010
MESH:D000544
NCI:C2866
SNOMEDCT_US_2018_03_01:26929004
SNOMEDCT_US_2018_03_01:73768007
UMLS_CUI:C0002395
Alzheimer disease
Alzheimers dementia
disease_ontology
DOID:10652
Xref MGI.
OMIM mapping confirmed by DO. [SN].
Alzheimer's disease
true
true
A kidney disease characterized by the failure of the kidneys to adequately filter waste products from the blood.
https://www.ncbi.nlm.nih.gov/pubmed/11864518
ICD10CM:N19
ICD9CM:586
MESH:D051437
NCI:C4376
SNOMEDCT_US_2018_03_01:42399005
UMLS_CUI:C0035078
renal failure
disease_ontology
DOID:1074
PRISM.
kidney failure
true
An artery disease characterized by chronic elevated blood pressure in the arteries.
https://www.ncbi.nlm.nih.gov/pubmed/31055731
CSP2005:0571-5243
CSP2005:4003-0017
EFO:0000537
ICD10CM:I10
ICD9CM:401-405.99
ICD9CM:997.91
MESH:D006973
NCI2004_11_17:C3117
NCI:C3117
SNOMEDCT_US_2018_03_01:38341003
UMLS_CUI:C0020538
HTN
High blood pressure
hyperpiesia
vascular hypertensive disorder
disease_ontology
hypertensive disease
DOID:10763
hypertension
true
true
https://www.ncbi.nlm.nih.gov/pubmed/11104349
CSP2005:0723-5649
GARD:3603
GARD:7038
ICD10CM:Q02
ICD9CM:742.1
ICD9CM_2006:742.1
MESH:D008831
NCI:C85874
SNOMEDCT_US_2018_03_01:1829003
UMLS_CUI:C0025958
Microcephaly is a birth defect where a baby’s head is smaller than expected when compared to babies of the same sex and age. Babies with microcephaly often have smaller brains that might not have developed properly.
Microcephalus
microencephaly
disease_ontology
DOID:10907
OMIM mapping confirmed by DO. [SN].
microcephaly
http://www.case.edu/EpSO.owl#Microcephaly
true
Microcephaly is a birth defect where a baby’s head is smaller than expected when compared to babies of the same sex and age. Babies with microcephaly often have smaller brains that might not have developed properly.
https://www.cdc.gov/ncbddd/birthdefects/microcephaly.html
A cognitive disorder where the memory is disturbed or lost and involves the loss of memories previously established, loss of the ability to create new memories, or loss of the ability to learn new information.
DOID:4544
ICD10CM:R41.3
ICD9CM:294.0
MESH:D000647
MTHICD9_2006:294.0
NCI2004_11_17:C35764
NCI:C2867
SNOMEDCT_US_2018_03_01:3298001
SNOMEDCT_US_2018_03_01:48167000
SNOMEDCT_US_2018_03_01:78461004
UMLS_CUI:C0002622
UMLS_CUI:C0002625
Amnestic syndrome
Korsakoff's psychosis or syndrome
amnesia
disease_ontology
DOID:10914
amnestic disorder
true
An anxiety disorder that involves unwanted and repeated thoughts, feelings, ideas, sensations (obsessions), or behaviors that make them feel driven to do something (compulsions).
ICD10CM:F42
ICD10CM:F42.8
ICD10CM:F42.9
ICD9CM:300.3
MESH:D009771
MTHICD9_2006:300.3
NCI:C88411
SNOMEDCT_US_2018_03_01:71478004
UMLS_CUI:C0028768
Anancastic neurosis
obsessive compulsive disorder
disease_ontology
DOID:10933
obsessive-compulsive disorder
true
A dissociative disorder that involves the simultaneous display of multiple distinct identities or personalities.
https://www.ncbi.nlm.nih.gov/pubmed/2912820
ICD10CM:F44.81
ICD9CM:300.14
ICD9CM_2006:300.14
MESH:D009105
NCI:C94330
SNOMEDCT_US_2018_03_01:31611000
UMLS_CUI:C0026773
Dissociative identity disorder
disease_ontology
DOID:10934
multiple personality disorder
true
A disease of mental health in which the normally well-integrated functions of memory, identity, perception, or consciousness are separated (dissociated).
DOID:4963
CSP2005:2483-7018
ICD10CM:F44.9
ICD10CM:F48.9
ICD9CM:300.15
ICD9CM:300.9
MESH:D004213
NCI:C92197
SNOMEDCT_US_2018_03_01:44376007
UMLS_CUI:C0012746
UMLS_CUI:C0041857
Dissociation is a psychological state that may vary in severity from mild detachment from immediate surroundings to more severe detachment and apparent unresponsiveness. In mild cases, dissociation can be regarded as a coping mechanism in seeking to minimize or tolerate stress, conflict or boredom. If a coping response to stress, the dissociative state may be preceded by a phase where anxiety symptoms (e.g. hyperventilation) are apparent. More severe dissociative states are seen in dissociative disorders and may include depersonalization and amnesia. Dissociative disorders are sometimes triggered by traumatic experience, but may be preceded by only minor stress or there may be no apparent trigger.
dissociative disease
dissociative reaction
dissociative state
disease_ontology
DOID:10935
dissociative disorder
true
Dissociation is a psychological state that may vary in severity from mild detachment from immediate surroundings to more severe detachment and apparent unresponsiveness. In mild cases, dissociation can be regarded as a coping mechanism in seeking to minimize or tolerate stress, conflict or boredom. If a coping response to stress, the dissociative state may be preceded by a phase where anxiety symptoms (e.g. hyperventilation) are apparent. More severe dissociative states are seen in dissociative disorders and may include depersonalization and amnesia. Dissociative disorders are sometimes triggered by traumatic experience, but may be preceded by only minor stress or there may be no apparent trigger.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#dissociative
A specific developmental disorder that is characterized by co-existence of attentional problems and hyperactivity, with each behavior occurring infrequently alone and symptoms starting before seven years of age.
DOID:1093
https://www.ncbi.nlm.nih.gov/pubmed/28749241
EFO:0003888
MESH:D001289
NCI:C35092
OMIM:143465
OMIM:608903
OMIM:608904
OMIM:608905
OMIM:608906
OMIM:612311
OMIM:612312
UMLS_CUI:C0041671
ADHD
attention deficit disorder
hyperkinetic disorder
disease_ontology
DOID:1094
Xref MGI.
attention deficit hyperactivity disorder
true
true
A central nervous system disease that is characterized by the complete paralysis of half of the body.
https://www.ncbi.nlm.nih.gov/pubmed/28043687
GARD:6583
ICD9CM:343.4
MESH:D006429
MTHICD9_2006:343.4
SNOMEDCT_US_2018_03_01:1593000
UMLS_CUI:C0392550
Infantile hemiplegia
Postnatal infantile hemiplegia
disease_ontology
DOID:10969
hemiplegia
true
A dissociative disorder in which the sufferer is affected by persistent or recurrent feelings of depersonalization and/or derealization.
https://www.ncbi.nlm.nih.gov/pubmed/31437864
GARD:6260
ICD9CM:300.6
MESH:D003861
MTHICD9_2006:300.6
NCI:C94331
SNOMEDCT_US_2018_03_01:70764005
UMLS_CUI:C0683416
Depersonalization
Neurotic derealization
disease_ontology
DOID:11038
depersonalization disorder
true
true
A parathyroid gland disease characterized by decreased function of parathyroid glands with underproduction of parathyroid hormone (PTH), leading to abnormally low ionized calcium levels in the blood.
GARD:6733
ICD10CM:E20
ICD10CM:E20.9
ICD9CM:252.1
MESH:D007011
NCI:C78350
OMIM:146200
OMIM:307700
ORDO:2238
SNOMEDCT_US_2018_03_01:36976004
UMLS_CUI:C0020626
disease_ontology
DOID:11199
Xref MGI.
hypoparathyroidism
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/hypoparathyroidism
true
An endocrine system disease that is located_in the parathyroid gland.
ICD10CM:E21.5
ICD9CM:252
ICD9CM:252.9
MESH:D010279
NCI:C26844
SNOMEDCT_US_2018_03_01:73132005
UMLS_CUI:C0030517
disease of parathyroid glands
disease_ontology
DOID:11201
parathyroid gland disease
A phobic disorder that involves social anxiety occurring only in specific public or social situations, interactions with others or being evaluated or scrutinized by other people.
https://www.ncbi.nlm.nih.gov/pubmed/28360564
ICD10CM:F40.1
ICD10CM:F40.10
ICD9CM:300.23
MESH:D000072861
NCI:C34927
SNOMEDCT_US_2018_03_01:25501002
UMLS_CUI:C0031572
disease_ontology
DOID:11257
social phobia
true
A hemangioma that is characterized by a configuration of blood vessels that shunts arterial blood directly into veins by bypassing the capillary system.
ICD10CM:I77.0
NCI2004_11_17:C4297
NCI:C2882
SNOMEDCT_US_2018_03_01:11071001
SNOMEDCT_US_2018_03_01:14156004
UMLS_CUI:C0334533
Arteriovenous malformations are abnormal blood vessels that shunt blood directly from the arterial to the venous circulation.There is a risk of intracranial hemorrhage, estimated at 2-4% per year, which can be limited or catastrophic. Management is therefore directed at reducing mortality and morbidity (neurological and cognitive impairment) from hemorrhage.
Arteriovenous hemangioma
Cirsoid aneurysm
Racemose Angioma
Racemose aneurysm
Racemose hemangioma
disease_ontology
DOID:11294
arteriovenous malformation
true
Arteriovenous malformations are abnormal blood vessels that shunt blood directly from the arterial to the venous circulation.There is a risk of intracranial hemorrhage, estimated at 2-4% per year, which can be limited or catastrophic. Management is therefore directed at reducing mortality and morbidity (neurological and cognitive impairment) from hemorrhage.
https://www.epilepsydiagnosis.org/aetiology/arteriovenous-malformation-overview.html
A hypersensitivity reaction type IV disease characterized by the growth of collections of inflammatory cells (granulomas) in multiple organs.
CSP2005:2024-3715
GARD:7607
ICD10CM:D80-D89
ICD10CM:D86
ICD10CM:D86.9
ICD9CM:135
MESH:D012507
NCI:C34995
ORDO:797
SNOMEDCT_US_2018_03_01:31541009
UMLS_CUI:C0036202
Boeck sarcoid
lymphogranulomatosis
disease_ontology
DOID:11335
sarcoidosis
https://www.epilepsy.com/learn/professionals/co-existing-disorders/inflammatory-disorders
true
A cardiovascular system disease that involves the heart.
ICD10CM:I51.9
ICD9CM:429.9
MESH:D006331
NCI:C3079
SNOMEDCT_US_2018_03_01:56265001
UMLS_CUI:C0018799
Cardiac Disorders
disease_ontology
DOID:114
heart disease
https://www.epilepsy.com/learn/professionals/co-existing-disorders/cardiac-disorders
true
ICD9CM:337.1
UMLS_CUI:C0154691
autonomic nervous system disorder
disease_ontology
DOID:11465
autonomic nervous system disease
A lower respiratory tract disease that affects the airways leading into the lungs, which is caused due to inflammation of the bronchi and bronchioles, infection, or blockage.
DOID:1175
DOID:12322
MESH:D001982
SNOMEDCT_US_2018_03_01:41427001
UMLS_CUI:C0006261
Bronchospasm
disease_ontology
DOID:1176
bronchial disease
An immune system disease that is an exaggerated immune response to allergens, such as insect venom, dust mites, pollen, pet dander, drugs or some foods.
allergic disease
ICD10CM:T78.40
MESH:D006967
NCI:C3114
SNOMEDCT_US_2018_03_01:21957007
SNOMEDCT_US_2018_03_01:91232002
UMLS_CUI:C0020517
allergic disease
hypersensitivity
hypersensitivity reaction type I disease
disease_ontology
DOID:1205
allergic hypersensitivity disease
An autoimmune hypersensitivity disease that is characterized by necrotizing granulomatous inflammation of the upper and lower respiratory tract, glomerulonephritis, vasculitis, and the presence of antineutrophil cytoplasmatic autoantibodies (ANCAs) in patient sera, and is located_in lung, located_in kidney, located_in skin resulting from an autoimmune attack by antineutrophil cytoplasmic antibodies against small and medium-size blood vessels.
GARD:7880
ICD10CM:M31.3
ICD10CM:M31.30
ICD9CM:446.4
MESH:D014890
MTHICD9_2006:446.4
NCI:C3444
OMIM:608710
SNOMEDCT_US_2018_03_01:23782005
UMLS_CUI:C3495801
Necrotizing respiratory granulomatosis
Wegener granulomatosis, formerly
disease_ontology
DOID:12132
granulomatosis with polyangiitis
https://www.epilepsy.com/learn/professionals/challenging-cases/granulomatosis-polyangiitis
true
A learning disability involving a math disability can cause such difficulties as learning math concepts (such as quantity, place value, and time), difficulty memorizing math facts, difficulty organizing numbers, and understanding how problems are organized on the page.
MESH:D060705
Mathematics disorder
disorder of arithmetical skills
disease_ontology
DOID:12568
dyscalculia
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
true
A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.
DOID:73
ICD9CM:429.2
MESH:D002318
NCI:C2931
SNOMEDCT_US_2018_03_01:49601007
UMLS_CUI:C0007222
disease of subdivision of hemolymphoid system
disease_ontology
DOID:1287
cardiovascular system disease
A central nervous system disease that results in the progressive deterioration of function or structure of neurons.
DOID:4874
ICD10CM:G31.9
MESH:D019636
NCI2004_11_17:C4802
NCI:C27090
UMLS_CUI:C0524851
UMLS_CUI:C1285162
Neurodegenerative disease
degenerative disease
disease_ontology
DOID:1289
neurodegenerative disease
An autoimmune hypersensitivity disease that involves attack of immune cells which destroy the exocrine glands that produce tears and saliva.
DOID:416
CSP2005:0729-8405
GARD:10252
ICD10CM:M35.0
ICD10CM:M35.00
ICD9CM:710.2
MESH:D012859
NCI:C26883
NCI:C70647
OMIM:270150
SNOMEDCT_US_2018_03_01:83901003
UMLS_CUI:C0086981
UMLS_CUI:C1527336
Sicca syndrome
Sjogren syndrome
xerodermosteosis
disease_ontology
DOID:12894
OMIM mapping confirmed by DO. [LS].
Sjogren's syndrome
https://www.epilepsy.com/learn/professionals/co-existing-disorders/inflammatory-disorders
true
An amnestic disorder that is characterized by temporary but almost total disruption of short-term memory with a range of problems accessing older memories.
https://www.ncbi.nlm.nih.gov/pubmed/3579680
GARD:8172
ICD10CM:G45.4
ICD9CM:437.7
MESH:D020236
NCI:C85198
UMLS_CUI:C0338591
disease_ontology
DOID:13027
transient global amnesia
true
A cognitive disorder resulting from a loss of brain function affecting memory, thinking, language, judgement and behavior.
https://www.ncbi.nlm.nih.gov/pubmed/20161538
ICD9CM:290.8
MESH:D003704
UMLS_CUI:C0154319
disease_ontology
DOID:1307
dementia
true
A cystitis characterized by a sudden onset or severe symptoms.
https://www.ncbi.nlm.nih.gov/pubmed/30279715
ICD10CM:N30.0
ICD9CM:595.0
NCI:C26934
SNOMEDCT_US_2018_03_01:68226007
UMLS_CUI:C0149523
urinary tract infection
disease_ontology
DOID:13148
acute cystitis
true
A central nervous system cancer that is characterized by the growth of abnormal cells in the tissues of the brain.
DOID:2125
DOID:2126
DOID:3543
DOID:6649
DOID:911
https://www.ncbi.nlm.nih.gov/pubmed/32034533
CSP2005:2006-2736
ICD10CM:C71
ICD10CM:C71.9
ICD9CM:191
ICD9CM:191.9
ICD9CM:239.6
MESH:D001932
NCI2004_11_17:C2907
NCI2004_11_17:C3568
NCI2004_11_17:C4952
NCI2004_11_17:C4954
NCI2004_11_17:C5115
NCI2004_11_17:C7710
NCI:C2907
NCI:C3568
NCI:C4952
NCI:C4954
NCI:C5115
NCI:C7710
SNOMEDCT_US_2018_03_01:93727008
UMLS_CUI:C0006118
UMLS_CUI:C0153633
UMLS_CUI:C0220624
UMLS_CUI:C0750974
UMLS_CUI:C0750979
UMLS_CUI:C1334557
BT - Brain tumour
adult brain tumor
adult malignant brain neoplasm
brain neoplasm
brain neoplasm, adult
malignant brain tumour
malignant primary brain neoplasm
malignant primary brain tumor
malignant tumor of Brain
malignant tumor of adult brain
neoplasm of brain
primary brain neoplasm
primary brain tumor
primary malignant neoplasm of brain
tumor of the Brain
disease_ontology
DOID:1319
brain cancer
true
An inherited metabolic disorder that involves certain enzymes in the heme bio-synthetic pathway resulting in the overproduction and accumulation of the porphyrins.
GARD:10353
ICD10CM:E80.20
ICD9CM:277.1
ICD9CM_2006:277.1
MESH:D011164
MTHICD9_2006:277.1
NCI:C97096
SNOMEDCT_US_2018_03_01:29094004
SNOMEDCT_US_2018_03_01:86292002
UMLS_CUI:C0032708
Hematoporphyria
Porphyrinopathy
disorder of porphyrin and hem metabolism
disorder of porphyrin metabolism
disease_ontology
DOID:13268
porphyria
A carbohydrate metabolic disorder that involves low blood glucose resulting from an excess of insulin.
DOID:9996
https://www.ncbi.nlm.nih.gov/pubmed/27531853
ICD10CM:E16.9
MESH:D046768
NCI:C4375
SNOMEDCT_US_2018_03_01:42681006
SNOMEDCT_US_2018_03_01:66149005
UMLS_CUI:C0027773
Islet cell hyperplasia
nesidioblastosis
persistent hyperinsulinemia hypoglycemia of infancy
disease_ontology
DOID:13317
OMIM mapping confirmed by DO. [SN].
hyperinsulinemic hypoglycemia
true
A learning disability involing difficulty reading resulting primarily from neurological factors which affect any part of the reading process.
ICD9CM:315.09
UMLS_CUI:C0154631
disease_ontology
DOID:13365
reading disorder
A syndrome that is characterized by the growth of numerous noncancerous tumors in many parts of the body.
CSP2005:0727-2535
GARD:7830
ICD10CM:Q85.1
ICD9CM:759.5
MESH:D014402
MTHICD9_2006:759.5
NCI2004_11_17:C3424
NCI:C3424
OMIM:PS191100
SNOMEDCT_US_2018_03_01:7199000
UMLS_CUI:C0041341
Tuberous sclerosis, a genetic disorder, is a common cause of malformations of cortical development, with a birth incidence of 1:6000 births. It is a disorder caused by a defect in the mTOR pathway, an intracellular pathway that regulates cell growth and differentiation, resulting in abnormalities in a number of organs, including the brain, skin, heart, kidneys and eyes.
Bourneville's disease
Epiloia
Tuberose sclerosis
Tuberous sclerosis syndrome
cerebral sclerosis
disease_ontology
DOID:13515
OMIM mapping confirmed by DO. [LS].
tuberous sclerosis
true
Tuberous sclerosis, a genetic disorder, is a common cause of malformations of cortical development, with a birth incidence of 1:6000 births. It is a disorder caused by a defect in the mTOR pathway, an intracellular pathway that regulates cell growth and differentiation, resulting in abnormalities in a number of organs, including the brain, skin, heart, kidneys and eyes.
https://www.epilepsydiagnosis.org/aetiology/tuberous-sclerosis-overview.html
A malaria that involves neurologic damage resulting from blockage of the blood vessels, caused due to the infection of the red blood cells by Plasmodium species.
https://www.ncbi.nlm.nih.gov/books/NBK83677/
ICD10CM:B50.0
MESH:D016779
NCI:C128373
SNOMEDCT_US_2018_03_01:53622003
UMLS_CUI:C0024534
Plasmodium falciparum in sub-Saharan Africa can cause neurologic complications in half of affected individuals. This infection is the most important cause of epileptic seizures in these regions. Cerebral malaria with related coma may be fatal, especially in children. Plasmodium vivax in Asia causes similar neurological complications and epilepsy.
Malarial encephalitis
disease_ontology
DOID:14069
cerebral malaria
true
true
Plasmodium falciparum in sub-Saharan Africa can cause neurologic complications in half of affected individuals. This infection is the most important cause of epileptic seizures in these regions. Cerebral malaria with related coma may be fatal, especially in children. Plasmodium vivax in Asia causes similar neurological complications and epilepsy.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
A chromosomal disease that is characterized by flat-looking facial features and weak muscle tone (hypotonia) in infancy and is caused by trisomy of all or a critical portion of chromosome 21 and is associated with intellectual disability.
CSP2005:1254-8068
GARD:10247
ICD10CM:Q90
ICD10CM:Q90.9
ICD9CM:758.0
MESH:D004314
MTHICD9_2006:758.0
NCI2004_11_17:C2993
NCI:C2993
OMIM:190685
ORDO:870
SNOMEDCT_US_2018_03_01:41040004
UMLS_CUI:C0013080
Down syndrome is a common chromosomal disorder with well-recognized dysmorphic features, epilepsy occurs in approximately 10% of individuals and age of seizure onset is bimodal with 40% having seizures before 1 year of age (commonly epileptic spasms) and 40% having seizures from the third decade of life. All major seizure types have been described in children with Down syndrome including focal seizures, epileptic spasms, myoclonic and generalized tonic-clonic seizures. Phenotypes seen may also include reflex (startle-induced) seizures. Co-existing acquired structural brain abnormalities may occur, as a consequence of congenital cardiac disease.
Complete trisomy 21 syndrome
Down's syndrome
Down's syndrome - trisomy 21
Downs syndrome
G Trisomy
trisomy 21 syndrome
disease_ontology
DOID:14250
OMIM mapping confirmed by DO. [SN].
Down syndrome
true
true
Down syndrome is a common chromosomal disorder with well-recognized dysmorphic features, epilepsy occurs in approximately 10% of individuals and age of seizure onset is bimodal with 40% having seizures before 1 year of age (commonly epileptic spasms) and 40% having seizures from the third decade of life. All major seizure types have been described in children with Down syndrome including focal seizures, epileptic spasms, myoclonic and generalized tonic-clonic seizures. Phenotypes seen may also include reflex (startle-induced) seizures. Co-existing acquired structural brain abnormalities may occur, as a consequence of congenital cardiac disease.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#trisomy21
https://www.ncbi.nlm.nih.gov/pubmed/25387857
https://www.ncbi.nlm.nih.gov/pubmed/27629553
CSP2005:1849-6833
GARD:10739
ICD10CM:E75.4
MESH:D009472
NCI:C61257
OMIM:PS256730
ORDO:216
ORDO:79262
SNOMEDCT_US_2018_03_01:42012007
UMLS_CUI:C0027877
hereditary ceroid lipofuscinosis
disease_ontology
DOID:14503
Xref MGI.
OMIM mapping submitted by NeuroDevNet. [LS].
neuronal ceroid lipofuscinosis
true
A sphingoliidosis characterized by the accumulation of the lipid sphingomyelin in lysosomes in cells.
DOID:0050442
DOID:0050443
DOID:14770
GARD:13334
ICD10CM:E75.24
ICD10CM:E75.249
MESH:D009542
NCI:C61269
SNOMEDCT_US_2018_03_01:58459009
UMLS_CUI:C0028064
Sphingomyelinase Deficiency Disease
lipoid histiocytosis
sphingomyelin lipidosis
disease_ontology
DOID:14504
OMIM mapping confirmed by DO. [SN].
Niemann-Pick disease
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/inborn-errors/niemann-pick-disease
true
A disease that is characterized by abnormally rapid cell division.
DOID:0000818
cell process disease
neoplasm
disease_ontology
DOID:14566
disease of cellular proliferation
A disease that involves a psychological or behavioral pattern generally associated with subjective distress or disability that occurs in an individual, and which are not a part of normal development or culture.
ICD10CM:F99
ICD10CM:F99-F99
MESH:D001523
NCI:C2893
SNOMEDCT_US_2018_03_01:74732009
UMLS_CUI:C0004936
disease_ontology
DOID:150
disease of mental health
A disease of mental health that involve long-term patterns of thoughts and behaviors that cause serious problems with relationships and work.
ICD9CM:301.8
ICD9CM:301.89
UMLS_CUI:C0029707
character disorder
disease_ontology
DOID:1510
personality disorder
A disease of mental health that affects cognitive functions including memory processing, perception and problem solving.
https://www.ncbi.nlm.nih.gov/pubmed/20161538
ICD10CM:F09
MESH:D019965
NCI2004_11_17:C34870
NCI:C34870
UMLS_CUI:C0029227
cognitive disease
disease_ontology
Organic Mental disorder
DOID:1561
cognitive disorder
true
A disease by infectious agent that results_in infection, has_material_basis_in Fungi, which pass the resistance barriers of the human or animal body.
https://www.ncbi.nlm.nih.gov/pubmed/26423537
ICD10CM:B35-B49
ICD10CM:B49
ICD9CM:110-118.99
MESH:D009181
NCI:C3245
SNOMEDCT_US_2018_03_01:3218000
UMLS_CUI:C0026946
mycosis
disease_ontology
mycoses
DOID:1564
fungal infectious disease
true
A substance abuse that involves the recurring use of alcoholic beverages despite negative consequences.
ICD10CM:F10.1
ICD9CM:305.0
ICD9CM:305.00
MESH:D000437
NCI:C20701
SNOMEDCT_US_2018_03_01:15167005
UMLS_CUI:C0085762
Alcohol Abuse
Ethanol abuse
alcohol abuse
disease_ontology
DOID:1574
alcohol use disorder
http://www.case.edu/EpSO.owl#AlcoholAbuse
true
An autoimmune hypersensitivity disease that involves inflammation or pain in the muscles, joints, or fibrous tissue.
disease_ontology
DOID:1575
rheumatic disease
A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.
DOID:3226
https://www.ncbi.nlm.nih.gov/pubmed/20161538
ICD10CM:J96-J99
ICD10CM:J98
ICD9CM:510-519.99
ICD9CM:519
UMLS_CUI:C0029582
disease_ontology
DOID:1579
respiratory system disease
true
A disease of anatomical entity that is located_in the integumentary system comprising the skin and its appendages.
disease_ontology
DOID:16
integumentary system disease
A bladder disease that is characterized by inflammation of the bladder.
ICD10CM:N30
ICD10CM:N30.9
ICD9CM:595
ICD9CM:595.9
MESH:D003556
NCI:C26738
SNOMEDCT_US_2018_03_01:38822007
UMLS_CUI:C0010692
disease_ontology
DOID:1679
cystitis
CSP2005:0724-8315
ICD10CM:Q24.9
ICD9CM:746.9
MESH:D006330
NCI2004_11_17:C34666
NCI:C34666
SNOMEDCT_US_2018_03_01:13213009
UMLS_CUI:C0018798
Congenital heart defects, or diseases, are problems with the heart’s structure that are present at birth. They may change the normal flow of blood through the heart. Congenital heart defects are the most common type of birth defect.
Congenital Heart Defects
Congenital anomaly of heart
Heart Malformation
congenital heart defect
heart defect
disease_ontology
Heart-congenital defect
DOID:1682
OMIM mapping confirmed by DO. [SN].
congenital heart disease
https://www.epilepsy.com/learn/professionals/co-existing-disorders/cardiac-disorders/congenital-heart-disease
true
Congenital heart defects, or diseases, are problems with the heart’s structure that are present at birth. They may change the normal flow of blood through the heart. Congenital heart defects are the most common type of birth defect.
https://www.nhlbi.nih.gov/health-topics/congenital-heart-defects
A disease of anatomical entity that occurs in the muscular and/or skeletal system.
https://www.ncbi.nlm.nih.gov/pubmed/20161538
MESH:D009140
NCI:C107377
SNOMEDCT_US_2018_03_01:928000
UMLS_CUI:C0026857
disease_ontology
DOID:17
musculoskeletal system disease
true
A disease of mental health where symptoms are deliberately produced, feigned or exaggerated in order to falsely demonstrate the presence of an illness.
ICD10CM:F68.11
ICD9CM:300.16
SNOMEDCT_US_2018_03_01:31122002
UMLS_CUI:C0015481
Fabricated / factitious illness may be presented as epilepsy and may be misdiagnosed as such because of the reliance on truthful accounts of witnesses to make a clinical diagnosis of epilepsy. If the witness is making up a story this may not be easily apparent to the clinician. There may be complex psychological, psychosocial and family reasons behind this illness behaviour or it may simply be because the diagnosis of epilepsy may lead to financial benefits. The illness behaviour may be on the part of an adult who presents themselves as having seizures or a carer who presents their child as affected. Factitious illness may be suspected if there are aspects of the clinical history that seem inconsistent with an epilepsy diagnosis, if the seizures have only been witnessed by one individual, if frequent seizures are accompanied by normal EEG (including prolonged studies) and if seizures remain refractory on history to medication however there is no evidence of behavioural or cognitive comorbidity in the child.
Fabricated / factitious illness
Munchausen syndrome
disease_ontology
Factitious seizures
Fictitious epilepsy
DOID:1766
factitious disorder
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#fabricated
https://www.epilepsysociety.org.uk/non-epileptic-seizures#.XJhlBXduLIV
true
Fabricated / factitious illness may be presented as epilepsy and may be misdiagnosed as such because of the reliance on truthful accounts of witnesses to make a clinical diagnosis of epilepsy. If the witness is making up a story this may not be easily apparent to the clinician. There may be complex psychological, psychosocial and family reasons behind this illness behaviour or it may simply be because the diagnosis of epilepsy may lead to financial benefits. The illness behaviour may be on the part of an adult who presents themselves as having seizures or a carer who presents their child as affected. Factitious illness may be suspected if there are aspects of the clinical history that seem inconsistent with an epilepsy diagnosis, if the seizures have only been witnessed by one individual, if frequent seizures are accompanied by normal EEG (including prolonged studies) and if seizures remain refractory on history to medication however there is no evidence of behavioural or cognitive comorbidity in the child.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#fabricated
A somatoform disorder that involves numbness, blindness, paralysis or fits without a neurological cause.
https://www.ncbi.nlm.nih.gov/books/NBK2609/
GARD:6191
ICD10CM:F44
ICD9CM:300.11
MESH:D003291
MTHICD9_2006:300.11
SNOMEDCT_US_2018_03_01:20734000
SNOMEDCT_US_2018_03_01:44376007
SNOMEDCT_US_2018_03_01:89239005
UMLS_CUI:C0009946
Conversion Hysterical Neurosis
Conversion hysteria or reaction
Hysterical neurosis, conversion type
disease_ontology
DOID:1768
conversion disorder
true
A cardiovascular system disease that primarily affects the blood vessels which includes the arteries, veins and capillaries that carry blood to and from the heart.
DOID:0000405
DOID:2403
DOID:2869
DOID:324
DOID:325
DOID:45
ICD10CM:I72.9
ICD9CM:442.9
MESH:D000783
MESH:D014652
MESH:D020758
MESH:D020760
NCI:C26693
NCI:C35117
SNOMEDCT_US_2018_03_01:27550009
SNOMEDCT_US_2018_03_01:85659009
UMLS_CUI:C0002940
UMLS_CUI:C0042373
UMLS_CUI:C0752127
UMLS_CUI:C0752130
vascular tissue disease
disease_ontology
DOID:178
vascular disease
A disease of anatomical entity that is located_in kidney, ureter, bladder and urethra.
DOID:579
NCI2004_11_17:C27599
NCI:C27599
UMLS_CUI:C1335051
Non-neoplastic urinary tract disease
urinary tract disease
disease_ontology
DOID:18
urinary system disease
A childhood electroclinical syndrome that is characterized by brief and frequent absence seizures in children with age of onset between four and ten years.
CSP2005:0485-7316
MESH:D004832
NCI:C3023
SNOMEDCT_US_2018_03_01:16757004
SNOMEDCT_US_2018_03_01:79631006
UMLS_CUI:C0014553
Childhood absence epilepsy is a genetic/idiopathic generalized epilepsy that should be considered in an otherwise normal child with multiple daily absence seizures associated with 2.5 - 3.5 Hz generalized spike-and-wave. Absence seizures are provoked by hyperventilation. Between 8 and 12 years of age the distinction between the clinical syndromes of juvenile absence epilepsy and childhood absence epilepsy depends on the frequency of absence seizures.
petit mal seizure
pyknolepsy
disease_ontology
absence seizure
DOID:1825
childhood absence epilepsy
http://www.case.edu/EpSO.owl#ChildhoodAbsenceEpilepsy
true
true
true
Childhood absence epilepsy is a genetic/idiopathic generalized epilepsy that should be considered in an otherwise normal child with multiple daily absence seizures associated with 2.5 - 3.5 Hz generalized spike-and-wave. Absence seizures are provoked by hyperventilation. Between 8 and 12 years of age the distinction between the clinical syndromes of juvenile absence epilepsy and childhood absence epilepsy depends on the frequency of absence seizures.
https://www.epilepsydiagnosis.org/syndrome/cae-overview.html
A brain disease that is characterized by the occurrance of at least two unprovoked seizures resulting from a persistent epileptogenic abnormality of the brain that is able to spontaneously generate paroxysmal activity and typically manifested by sudden brief episodes of altered or diminished consciousness, involuntary movements, or convulsions.
EFO:0000474
ICD10CM:G40.9
ICD10CM:G40.909
ICD9CM:345.9
MESH:D004827
NCI:C3020
SNOMEDCT_US_2018_03_01:84757009
UMLS_CUI:C0014544
epilepsy syndrome
epileptic syndrome
disease_ontology
DOID:1826
epilepsy
http://www.case.edu/EpSO.owl#Epilepsy
An epilepsy syndrome that is characterised by generalised seizures with no apparent cause which arise from many independent foci (multifocal epilepsies) or from epileptic circuits that involve the whole brain.
https://www.ncbi.nlm.nih.gov/books/NBK546611/
MESH:D004829
NCI:C3021
OMIM:600669
SNOMEDCT_US_2018_03_01:19598007
UMLS_CUI:C0014548
Generalised epilepsy
disease_ontology
DOID:1827
Xref MGI.
idiopathic generalized epilepsy
https://www.epilepsy.com/learn/professionals/about-epilepsy-seizures/idiopathic-generalized-epilepsies
true
true
A cranial nerve disease that is located_in the optic nerve.
CSP2005:2042-6601
MESH:D009901
NCI:C79698
SNOMEDCT_US_2018_03_01:77157004
UMLS_CUI:C0029132
disorder of the second nerve
optic nerve disorder
optic neuropathy
disease_ontology
DOID:1891
optic nerve disease
CSP2005:1254-8437
GARD:8705
ICD10CM:Q98.0
ICD10CM:Q98.4
ICD9CM:758.7
MESH:D007713
MTHICD9_2006:758.7
NCI2004_11_17:C34752
NCI:C34752
SNOMEDCT_US_2018_03_01:22053006
UMLS_CUI:C0022735
Klinefelter's syndrome is a common sex chromosomal abnormality and the most common cause of male hypogonadism. This syndrome is characterized by cognitive and behavioral dysfunction and hypogonadism. Seizures usually start between 3 months and 3 years of age and are typically well controlled with anti-seizure medication. Variable electroclinical characteristics may be seen from patient to patient, however generalized seizures (absence, tonic-clonic) are common seizure types. This disorder is diagnosed on routine karyotype examination.
Hypogonadotropic Hypogonadism
Klinefelter syndrome
XXY syndrome
XXY trisomy
kleinfelters syndrome (xxy)
disease_ontology
DOID:1921
No OMIM mapping, confirmed by DO. [LS].
Klinefelter's syndrome
true
Klinefelter's syndrome is a common sex chromosomal abnormality and the most common cause of male hypogonadism. This syndrome is characterized by cognitive and behavioral dysfunction and hypogonadism. Seizures usually start between 3 months and 3 years of age and are typically well controlled with anti-seizure medication. Variable electroclinical characteristics may be seen from patient to patient, however generalized seizures (absence, tonic-clonic) are common seizure types. This disorder is diagnosed on routine karyotype examination.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#kleinfelters
A sphingolipidosis characterized by deficiency of the enzyme glucocerebrosidase which results in the accumulation of harmful quantities of the glycolipid glucocerebroside throughout the body, especially within the bone marrow, spleen and liver.
GARD:8233
ICD10CM:E75.22
MESH:D005776
NCI:C61268
ORDO:355
SNOMEDCT_US_2018_03_01:2859005
SNOMEDCT_US_2018_03_01:62201009
UMLS_CUI:C0017205
Gaucher disease
acid beta-glucosidase deficiency
glocucerebrosidase deficiency
glucosylceramide beta-glucosidase deficiency
kerasin thesaurismosis
disease_ontology
DOID:1926
Xref MGI.
OMIM mapping confirmed by DO. [SN].
Gaucher's disease
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/inborn-errors/gauchers-disease
true
A lipid storage disease characterized by functional deficiencies in the enzymes needed for lysosomal degradation of sphingolipid substrates.
GARD:7672
ICD10CM:E75.3
MESH:D013106
NCI:C117254
SNOMEDCT_US_2018_03_01:58459009
UMLS_CUI:C0037899
Sphingolipidosis
sphingolipidoses
disease_ontology
DOID:1927
sphingolipidosis
A syndrome that is characterized by delayed development, intellectual disability, severe speech impairment, and problems with movement and balance.
CSP2005:4008-0043
GARD:5810
ICD10CM:Q93.5
MESH:D017204
NCI:C75462
OMIM:105830
SNOMEDCT_US_2018_03_01:76880004
UMLS_CUI:C0162635
Angelman syndrome results from deletion or inactivation of genes on the maternally-inherited chromosome 15q11-q13 region, while the paternal copy, which may be of normal sequence, is imprinted and therefore silenced. The patient has severe intellectual impairment, developmental delay, epilepsy, sleep disorder, jerky movements (especially hand-flapping), ataxia, frequent laughter or smiling, and usually a happy demeanor. Dysmorphic features are well recognized: microcephaly, prominent mandible, pointed chin, protruding tongue, and fair hair and complexion with blue eyes. Seizures are seen in up to 90% and usually start under the age of 2 years, commonly with generalized seizure types (generalized tonic-clonic, atypical absences, myoclonic seizures). Seizures may be aggravated by fever and by certain anti-seizure medications such as carbamazepine and lamotrigine. The EEG is usually very abnormal, and more abnormal than clinically expected. High amplitude 2-3 Hz frontal predominant activity may be seen; symmetrical 4-6 Hz high voltage activity or 3-6 Hz occipital activity overlaid with spikes and sharp waves and associated with eye closure are other patterns that occur. A CGH microarray is usually the most useful diagnostic test.
happy puppet syndrome
puppetlike syndrome
disease_ontology
DOID:1932
OMIM mapping confirmed by DO. [SN].
Angelman syndrome
https://www.ilae.org/guidelines/definition-and-classification
true
Angelman syndrome results from deletion or inactivation of genes on the maternally-inherited chromosome 15q11-q13 region, while the paternal copy, which may be of normal sequence, is imprinted and therefore silenced. The patient has severe intellectual impairment, developmental delay, epilepsy, sleep disorder, jerky movements (especially hand-flapping), ataxia, frequent laughter or smiling, and usually a happy demeanor. Dysmorphic features are well recognized: microcephaly, prominent mandible, pointed chin, protruding tongue, and fair hair and complexion with blue eyes. Seizures are seen in up to 90% and usually start under the age of 2 years, commonly with generalized seizure types (generalized tonic-clonic, atypical absences, myoclonic seizures). Seizures may be aggravated by fever and by certain anti-seizure medications such as carbamazepine and lamotrigine. The EEG is usually very abnormal, and more abnormal than clinically expected. High amplitude 2-3 Hz frontal predominant activity may be seen; symmetrical 4-6 Hz high voltage activity or 3-6 Hz occipital activity overlaid with spikes and sharp waves and associated with eye closure are other patterns that occur. A CGH microarray is usually the most useful diagnostic test.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#angelman
A brain disease that is caused by damage to the motor control centers of the developing brain during pregnancy, during childbirth or after birth, which affects muscle movement and balance.
DOID:1968
https://www.ncbi.nlm.nih.gov/pubmed/32149989
ICD10CM:G80
ICD10CM:G80.9
MESH:D002547
NCI:C34460
SNOMEDCT_US_2018_03_01:1178005
UMLS_CUI:C0007789
infantile cerebral palsy
disease_ontology
DOID:1969
cerebral palsy
http://www.case.edu/EpSO.owl#CerebralPalsy
true
A cognitive disorder that involves an excessive, irrational dread of everyday situations.
DOID:12884
ICD10CM:F41.9
MESH:D001008
NCI:C2878
OMIM:607834
SNOMEDCT_US_2018_03_01:65673007
UMLS_CUI:C0003469
anxiety
anxiety state
disease_ontology
DOID:2030
anxiety disorder
A specific developmental disorder that involves specific developmental disorders of speech and language.
ICD10CM:F80.9
MESH:D003147
NCI:C2958
SNOMEDCT_US_2018_03_01:74825008
UMLS_CUI:C0009460
disease_ontology
DOID:2033
communication disorder
An epilepsy syndrome that is characterised by seizures that are preceded by an isolated disturbance of a cerebral function and arise from an epileptic focus, a small portion of the brain that serves as the irritant driving the epileptic response.
MESH:D004828
NCI:C122812
SNOMEDCT_US_2018_03_01:29753000
SNOMEDCT_US_2018_03_01:67139004
UMLS_CUI:C0014547
Patients with focal epilepsy have focal seizure types, and may have typical interictal and/or ictal EEG findings that accompany focal seizure types (such as focal sharp waves or focal interictal slowing). Imaging showing a focal structural brain abnormality may be supportive, although patients with genetic etiologies and normal imaging can also have focal epilepsy. Focal epilepsies may be unifocal, multifocal or hemispheric.
localisation-related epilepsy
partial epilepsy
single focal epilepsy
disease_ontology
DOID:2234
focal epilepsy
http://www.case.edu/EpSO.owl#FocalEpilepsy
true
Patients with focal epilepsy have focal seizure types, and may have typical interictal and/or ictal EEG findings that accompany focal seizure types (such as focal sharp waves or focal interictal slowing). Imaging showing a focal structural brain abnormality may be supportive, although patients with genetic etiologies and normal imaging can also have focal epilepsy. Focal epilepsies may be unifocal, multifocal or hemispheric.
https://www.epilepsydiagnosis.org/epilepsy/focal-epilepsy-groupoverview.html
A brain ischemia that is characterized by ischemia of brief duration and without resultant tissue death.
DOID:2315
https://www.ncbi.nlm.nih.gov/pubmed/18777476
ICD10CM:G45.9
MESH:D002546
NCI:C50781
SNOMEDCT_US_2018_03_01:38609002
UMLS_CUI:C0007787
TIA
TIA - Transient ischaemic attack
TRANSIENT ISCHEMIC ATTACK
Transient cerebral ischaemia
Transient cerebral ischemia
Transient ischemic attacks
transient ischemic attack
disease_ontology
DOID:224
transient cerebral ischemia
true
A disease characterized by a group of signs and symptoms that occur together and characterize a particular abnormality.
MESH:D013577
NCI:C28193
SNOMEDCT_US_2018_03_01:64572001
UMLS_CUI:C0039082
disease_ontology
DOID:225
syndrome
An ischemia that is characterized by insufficient blood flow to the brain to meet metabolic demand.
https://www.ncbi.nlm.nih.gov/pubmed/9532709
MESH:D002545
SNOMEDCT_US_2018_03_01:11890005
UMLS_CUI:C0007786
Ischaemic encephalopathy
Ischemic encephalopathy
cerebral ischemia
ischemic brain disease
disease_ontology
DOID:2316
brain ischemia
true
A demyelinating disease that involves damage to the fatty myelin sheaths around the axons of the brain and spinal cord resulting in demyelination and scarring.
https://www.ncbi.nlm.nih.gov/pubmed/30562654
CSP2005:2042-2324
EFO:0003885
GARD:10255
ICD10CM:G35
ICD9CM:340
MESH:D009103
NCI:C3243
OMIM:612594
OMIM:612595
OMIM:612596
SNOMEDCT_US_2018_03_01:24700007
UMLS_CUI:C0026769
Generalized multiple sclerosis
insular sclerosis
disease_ontology
DOID:2377
OMIM mapping confirmed by DO. [LS].
multiple sclerosis
true
A central nervous system benign neoplasm that has_material_basis_in mature neurons, and is classified by the absence of neoplastic glial cells.
https://www.ncbi.nlm.nih.gov/pubmed/21741275
GARD:10638
MESH:D005729
NCI:C6934
SNOMEDCT_US_2018_03_01:53801007
disease_ontology
DOID:2426
gangliocytoma
http://www.case.edu/EpSO.owl#Gangliocytoma
true
A cognitive disorder that involves abnormal thinking and perceptions resulting in a disconnection with reality.
EFO:0000677
ICD9CM:298.8
UMLS_CUI:C0029516
mental or behavioural disorder
disease_ontology
DOID:2468
psychotic disorder
https://www.ncbi.nlm.nih.gov/pubmed/15347872
ICD9CM:742
UMLS_CUI:C0158538
Congenital Neurological Deficit
congenital neurologic anomaly
disease_ontology
DOID:2490
congenital nervous system abnormality
http://www.case.edu/EpSO.owl#CongenitalNeurologicalDeficit
true
GARD:6855
ICD10CM:G40.8
MESH:D018887
NCI:C84806
OMIM:245570
ORDO:98818
UMLS_CUI:C0282512
Landau Kleffner syndrome is characterized by subacute onset of acquired aphasia in a child with normal previous development and cognition. Seizures may not occur in all cases, and when present are infrequent and self-limiting. However, there is a high risk of significant residual language impairment.
acquired epileptic aphasia
disease_ontology
DOID:2538
OMIM mapping confirmed by DO. [SN].
Landau-Kleffner syndrome
true
Landau Kleffner syndrome is characterized by subacute onset of acquired aphasia in a child with normal previous development and cognition. Seizures may not occur in all cases, and when present are infrequent and self-limiting. However, there is a high risk of significant residual language impairment.
https://www.epilepsydiagnosis.org/syndrome/lks-overview.html
A variable age at onset electroclinical syndrome that is consistently induced by identifiable and objective-specific triggers, which may be an afferent stimulus or by the patient's own activity.
MESH:D020195
MTHICD9_2006:345.5
NCI:C85041
SNOMEDCT_US_2018_03_01:79745005
UMLS_CUI:C0270857
Reflex epilepsies are characterized by the presence of reflex seizures and the absence of spontaneous seizures. Reflex seizures may occur in epilepsies of varied etiologies (e.g. in structural brain abnormality and in genetic/idiopathic generalized epilepsies), however these are not categorized as reflex epilepsies as spontaneous seizures occur in addition to reflex seizures.
epilepsy, sensory-induced
disease_ontology
DOID:2548
reflex epilepsy
true
true
true
Reflex epilepsies are characterized by the presence of reflex seizures and the absence of spontaneous seizures. Reflex seizures may occur in epilepsies of varied etiologies (e.g. in structural brain abnormality and in genetic/idiopathic generalized epilepsies), however these are not categorized as reflex epilepsies as spontaneous seizures occur in addition to reflex seizures.
https://www.epilepsydiagnosis.org/syndrome/reflex-epilepsies-overview.html
A cardiovascular organ benign neoplasm that has_material_basis_in endothelial cells that line blood vessels and is characterised by increased number of normal or abnormal vessels filled with blood.
ICD10CM:D18.0
ICD10CM:D18.00
ICD9CM:228.0
ICD9CM:228.00
MESH:D006391
NCI:C3085
SNOMEDCT_US_2018_03_01:2099007
SNOMEDCT_US_2018_03_01:93474003
UMLS_CUI:C0018916
disease_ontology
DOID:255
hemangioma
An endocrine system disease that is located_in the pancreas.
ICD10CM:K86.8
ICD10CM:K86.89
ICD9CM:577.8
UMLS_CUI:C0029771
disease_ontology
DOID:26
pancreas disease
A disease of anatomical entity that is located_in endocrine glands which secretes a type of hormone directly into the bloodstream to regulate the body.
ICD10CM:E34.9
ICD9CM:259.9
MESH:D004700
NCI:C3009
SNOMEDCT_US_2018_03_01:67432001
UMLS_CUI:C0014130
disease_ontology
DOID:28
endocrine system disease
A bronchial disease that is characterized by chronic inflammation and narrowing of the airways, which is caused by a combination of environmental and genetic factors. The disease has_symptom recurring periods of wheezing (a whistling sound while breathing), has_symptom chest tightness, has_symptom shortness of breath, has_symptom mucus production and has_symptom coughing. The symptoms appear due to a variety of triggers such as allergens, irritants, respiratory infections, weather changes, exercise, stress, reflux disease, medications, foods and emotional anxiety.
DOID:12703
DOID:13829
DOID:13830
DOID:2840
DOID:5783
https://www.ncbi.nlm.nih.gov/books/NBK1169/
EFO:0000270
GARD:10246
ICD10CM:J45
ICD10CM:J45.90
ICD10CM:J45.909
ICD9CM:493
ICD9CM:493.9
KEGG:05310
MESH:D001249
NCI:C28397
SNOMEDCT_US_2018_03_01:21341004
UMLS_CUI:C0004096
Exercise induced asthma
bronchial hyperreactivity
chronic obstructive asthma
chronic obstructive asthma with acute exacerbation
chronic obstructive asthma with status asthmaticus
exercise-induced asthma
disease_ontology
DOID:2841
Xref MGI.
asthma
true
An autosomal genetic disease that is characterized by delayed repolarization of the heart following a heartbeat increases the risk of episodes of torsade de pointes (TDP, a form of irregular heartbeat that originates from the ventricles).
DOID:4069
CSP2005:4009-0053
GARD:6922
ICD10CM:I45.81
ICD9CM:426.82
MESH:D008133
MESH:D029597
NCI:C34786
NCI:C85049
OMIM:PS192500
ORDO:101016
ORDO:768
SNOMEDCT_US_2018_03_01:20852007
SNOMEDCT_US_2018_03_01:9651007
UMLS_CUI:C0023976
UMLS_CUI:C0035828
LQT
Romano-Ward syndrome
long Q-T syndrome
disease_ontology
DOID:2843
OMIM mapping confirmed by DO. [SN].
long QT syndrome
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#longqt
true
true
A sleep disorder that involves involuntarily grinding or clenching of the teeth while sleeping.
DOID:8891
ICD10CM:F45.8
ICD10CM:G47.63
ICD9CM:327.53
MESH:D002012
MESH:D020186
MTHICD9_2006:306.8
NCI:C73511
SNOMEDCT_US_2018_03_01:90207007
UMLS_CUI:C0006325
UMLS_CUI:C0393774
Bruxism - teeth grinding
Grinding teeth
Teeth grinding
sleep related bruxism
disease_ontology
DOID:2846
bruxism
http://s3.amazonaws.com/host-article-assets/rou/588018d47f8c9d0a098b4e3a/fulltext.pdf
http://www.case.edu/EpSO.owl#Bruxism
true
true
A disease of anatomical entity that is located_in the immune system.
EFO:0000540
ICD10CM:D89.9
ICD9CM:279
ICD9CM:279.9
UMLS_CUI:C0041806
disease_ontology
DOID:2914
immune system disease
A hypersensitivity reaction disease that is characterized by a cell-mediated response to antigens, where Th1 helper T cells react with antigens on antigen-presenting cells and cause a delayed type immune response.
ICD10CM:C88.9
MESH:D007160
SNOMEDCT_US_2018_03_01:86295000
UMLS_CUI:C0021070
disease_ontology
immunoproliferative disease
DOID:2916
hypersensitivity reaction type IV disease
An inherited metabolic disorder that affect the catabolism and anabolism of carbohydrates.
DOID:9434
CSP2005:0551-8201
MESH:D002239
UMLS_CUI:C0007001
disorder of carbohydrate transport and metabolism
inborn carbohydrate metabolism disorder
inborn errors of carbohydrate metabolism
disease_ontology
DOID:2978
carbohydrate metabolic disorder
A substance-related disorder that involves a maladaptive pattern of substance use leading to significant impairment in functioning.
MESH:D019966
NCI:C16522
SNOMEDCT_US_2018_03_01:26416006
UMLS_CUI:C0013146
disease_ontology
drug abuse
DOID:302
substance abuse
http://www.case.edu/EpSO.owl#SubstanceAbuse
https://www.epilepsy.com/learn/triggers-seizures/drug-abuse
true
A disease of mental health involving the abuse or dependence on a substance that is ingested in order to produce a high, alter one's senses, or otherwise affect functioning.
MESH:D019966
NCI:C92203
UMLS_CUI:C0236969
disease_ontology
DOID:303
substance-related disorder
An astrocytoma characterized by the presence of small areas of necrotizing tissue that is surrounded by anaplastic cells as well as the presence of hyperplastic blood vessels, and that has_material_basis_in abnormally proliferating cells derives_from multiple cell types including astrocytes and oligondroctyes.
DOID:3075
DOID:3080
CSP2005:2012-6410
GARD:2491
MESH:D005909
NCI2004_11_17:C3058
NCI2004_11_17:C9094
NCI:C129295
NCI:C3058
NCI:C39750
NCI:C9094
SNOMEDCT_US_2018_03_01:63634009
UMLS_CUI:C0017636
UMLS_CUI:C0278878
UMLS_CUI:C1514422
GBM
adult glioblastoma multiforme
grade IV adult Astrocytic tumor
primary glioblastoma multiforme
spongioblastoma multiforme
disease_ontology
DOID:3068
glioblastoma multiforme
http://www.case.edu/EpSO.owl#GlioblastomaMultiforme
A malignant glioma that is has_material_basis_in astrocyte cells, a type of star-shaped glial cell, located in the brain and spinal cord.
DOID:4861
CSP2005:2012-6768
ICDO:M9400/3
MESH:D001254
NCI:C4951
NCI:C60781
NCI:C6958
SNOMEDCT_US_2018_03_01:38713004
UMLS_CUI:C0004114
UMLS_CUI:C0750935
Astrocytic tumor
Astrocytoma, NOS
astrocytoma of Cerebrum
astrocytoma of brain
astroglioma
cerebral astrocytoma
disease_ontology
DOID:3069
astrocytoma
CSP2005:0485-7984
MESH:D004831
MTHICD9_2006:345.1
UMLS_CUI:C0014550
Early myoclonic encephalopathy is a syndrome characterized by frequent intractable seizures and severe early encephalopathy resulting in limited development and reduced life expectancy.
Epileptic seizures - myoclonic
Epileptic seizures, myoclonic
Myoclonic seizure
Myoclonic seizure disorder
myoclonia epileptica
myoclonic epilepsy
disease_ontology
DOID:308
early myoclonic encephalopathy
true
true
true
Early myoclonic encephalopathy is a syndrome characterized by frequent intractable seizures and severe early encephalopathy resulting in limited development and reduced life expectancy.
https://www.epilepsydiagnosis.org/syndrome/eme-overview.html
ICD10CM:E88.42
MESH:D017243
MTHICD9_2006:277.87
NCI:C84889
OMIM:545000
SNOMEDCT_US_2018_03_01:57254004
SNOMEDCT_US_2018_03_01:68448003
UMLS_CUI:C0162672
MERRF (myoclonic epilepsy with ragged red fibres) presents in the second decade or later, as progressive myoclonus epilepsy with typical EEG findings of giant somatosensory potentials and photosensitivity. Clinically, patients show prominent myoclonic seizures as well as other seizure types.
Fukuhara syndrome
Myoclonic epilepsy - ragged red fibers
Myoclonic epilepsy with ragged red fibres
Myoclonus epilepsy AND ragged red fibers
Myoclonus with epilepsy and with Ragged Red Fibers
disease_ontology
DOID:310
OMIM mapping confirmed by DO. [SN].
MERRF syndrome
true
MERRF (myoclonic epilepsy with ragged red fibres) presents in the second decade or later, as progressive myoclonus epilepsy with typical EEG findings of giant somatosensory potentials and photosensitivity. Clinically, patients show prominent myoclonic seizures as well as other seizure types.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#mitochondrial
A gastrointestinal system disease that is located_in the liver and/or biliary tract.
NCI:C3959
UMLS_CUI:C0267792
liver and biliary tract disease
disease_ontology
DOID:3118
hepatobiliary disease
A porphyria that has_symptom abdominal pain, has_symptom neuropathy, has_symptom autonomic instability and has_symptom psychosis.
MESH:D017094
OMIM:612740
ORDO:100924
SNOMEDCT_US_2018_03_01:55056006
UMLS_CUI:C0162533
hepatic porphyria
disease_ontology
DOID:3133
Xref MGI.
acute porphyria
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/inborn-errors/hepatic-porphyria
true
DOID:3182
https://www.ncbi.nlm.nih.gov/pubmed/26478444
GARD:9953
MESH:D009837
NCI2004_11_17:C6960
NCI:C129319
NCI:C6960
SNOMEDCT_US_2018_03_01:73348003
UMLS_CUI:C0028945
UMLS_CUI:C1335110
Oligodendrogliomas are cerebral tumors that are differentiated from other gliomas on the basis of their unique genetic characteristics and better response to chemotherapy. These tumors are classified according to their grade (low grade oligodendrogliomas: grade II of the WHO classification and anaplastic oligodendrogliomas: grade III of the WHO classification) and according to their pure or mixed histology (oligoastrocytomas).
oligodendroglial neoplasm
oligodendroglial tumor
disease_ontology
DOID:3181
oligodendroglioma
http://www.case.edu/EpSO.owl#Oligodendroglioma
true
Oligodendrogliomas are cerebral tumors that are differentiated from other gliomas on the basis of their unique genetic characteristics and better response to chemotherapy. These tumors are classified according to their grade (low grade oligodendrogliomas: grade II of the WHO classification and anaplastic oligodendrogliomas: grade III of the WHO classification) and according to their pure or mixed histology (oligoastrocytomas).
http://purl.obolibrary.org/obo/MONDO_0018744
ICD10CM:G95.9
ICD9CM:336.9
MESH:D013118
NCI:C97110
SNOMEDCT_US_2018_03_01:48522003
SNOMEDCT_US_2018_03_01:95648003
UMLS_CUI:C0037928
disease_ontology
myelopathy
DOID:319
spinal cord disease
An inherited metabolic disorder that involve an abnormal accumulation of substances inside the lysosome resulting from defects in lysosomal function.
CSP2005:1849-5878
MESH:D016464
NCI:C61250
SNOMEDCT_US_2018_03_01:23585005
UMLS_CUI:C0085078
disorder of lysosomal enzyme
inborn lysosomal enzyme disorder
lysosomal storage metabolism disorder
disease_ontology
DOID:3211
lysosomal storage disease
A neurodegenerative disease that is characterized by damage to the myelin sheath present around nerve axons.
MESH:D003711
NCI2004_11_17:C34527
NCI:C34527
UMLS_CUI:C0011303
demyelinating disorder
disease_ontology
DOID:3213
demyelinating disease
A vascular disease that is characterized by a restriction in blood supply to tissues.
MESH:D007511
NCI:C34738
SNOMEDCT_US_2018_03_01:52674009
UMLS_CUI:C0022116
disease_ontology
DOID:326
ischemia
A nervous system disease that affects either the spinal cord (myelopathy) or brain (encephalopathy) of the central nervous system.
ICD10CM:G96.9
MESH:D002493
NCI:C2934
SNOMEDCT_US_2018_03_01:23853001
UMLS_CUI:C0007682
disease_ontology
DOID:331
central nervous system disease
A mood disorder that involves alternating periods of mania and depression.
DOID:3311
DOID:9554
DOID:9555
https://www.ncbi.nlm.nih.gov/pubmed/31552392
CSP2005:2483-6684
CSP2005:2483-6691
EFO:0000289
ICD10CM:F31
ICD10CM:F31.9
ICD9CM:296.40
ICD9CM:296.60
ICD9CM:296.80
MESH:D001714
NCI2004_11_17:C34423
NCI2004_11_17:C34805
NCI:C34423
NCI:C34424
NCI:C34805
SNOMEDCT_US_2018_03_01:13746004
SNOMEDCT_US_2018_03_01:16506000
SNOMEDCT_US_2018_03_01:68569003
UMLS_CUI:C0005586
UMLS_CUI:C0005587
UMLS_CUI:C0024713
UMLS_CUI:C0236780
Manic Bipolar Affective disorder
Manic Depressive disorder
Manic bipolar I disorder
bipolar depression
bipolar disorder manic phase
manic depression
manic disorder
mixed bipolar disorder
disease_ontology
Depressive-manic psych.
DOID:3312
bipolar disorder
http://www.case.edu/EpSO.owl#BipolarDisorder
true
A cognitive disorder that involves a disturbance in mood as the predominant underlying feature.
https://www.ncbi.nlm.nih.gov/pubmed/18472483
EFO:0004247
ICD10CM:F30-F39
ICD10CM:F39
MESH:D019964
NCI:C92200
SNOMEDCT_US_2018_03_01:46206005
SNOMEDCT_US_2018_03_01:74421008
UMLS_CUI:C0525045
episodic mood disorder
disease_ontology
DOID:3324
Updating outdated UMLS CUI.
mood disorder
true
MESH:D004833
MTHICD9_2006:345.4
SNOMEDCT_US_2018_03_01:84340007
UMLS_CUI:C0014556
A localization-related (focal) form of epilepsy characterized by recurrent seizures that arise from foci within the temporal lobe, most commonly from its mesial aspect. A wide variety of psychic phenomena may be associated, including illusions, hallucinations, dyscognitive states, and affective experiences. The majority of complex partial seizures (see epilepsy, complex partial) originate from the temporal lobes. Temporal lobe seizures may be classified by etiology as cryptogenic, familial, or symptomatic (i.e., related to an identified disease process or lesion).
epilepsy, temporal lobe
disease_ontology
DOID:3328
temporal lobe epilepsy
http://www.case.edu/EpSO.owl#TemporalLobeEpilepsy
true
A localization-related (focal) form of epilepsy characterized by recurrent seizures that arise from foci within the temporal lobe, most commonly from its mesial aspect. A wide variety of psychic phenomena may be associated, including illusions, hallucinations, dyscognitive states, and affective experiences. The majority of complex partial seizures (see epilepsy, complex partial) originate from the temporal lobes. Temporal lobe seizures may be classified by etiology as cryptogenic, familial, or symptomatic (i.e., related to an identified disease process or lesion).
http://purl.obolibrary.org/obo/MONDO_0005115
MESH:D019305
OMIM:117100
UMLS_CUI:C0376532
Childhood epilepsy with centrotemporal spikes (previously known as benign childhood epilepsy with centrotemporal spikes (BCECTS) or Rolandic epilepsy) is a self-limiting epilepsy seen in children in their early school years. The seizures are brief, hemifacial seizures that may evolve to a focal to bilateral tonic-clonic seizure if they occur nocturnally. This epilepsy occurs in children who are otherwise neurologically and cognitively normal and imaging studies are unremarkable. The EEG shows a normal background with high amplitude centrotemporal sharp waves, which are activated with drowsiness and sleep. Seizures cease by mid to late adolescence.
BCECTS
BenignChildhoodEpilepsyWithCentrotemporalSpikes
benign Rolandic epilepsy
benign childhood epilepsy with centrotemporal spike
rolandic epilepsy
sylvan seizures
disease_ontology
DOID:3329
benign epilepsy with centrotemporal spikes
http://www.case.edu/EpSO.owl#BenignChildhoodEpilepsyWithCentrotemporalSpikes
Childhood epilepsy with centrotemporal spikes (previously known as benign childhood epilepsy with centrotemporal spikes (BCECTS) or Rolandic epilepsy) is a self-limiting epilepsy seen in children in their early school years. The seizures are brief, hemifacial seizures that may evolve to a focal to bilateral tonic-clonic seizure if they occur nocturnally. This epilepsy occurs in children who are otherwise neurologically and cognitively normal and imaging studies are unremarkable. The EEG shows a normal background with high amplitude centrotemporal sharp waves, which are activated with drowsiness and sleep. Seizures cease by mid to late adolescence.
https://www.epilepsydiagnosis.org/syndrome/ects-overview.html
MESH:D017034
UMLS_CUI:C0085541
A localization-related (focal) form of epilepsy characterized by seizures which arise in the frontal lobe. A variety of clinical syndromes exist depending on the exact location of the seizure focus. Frontal lobe seizures may be idiopathic (cryptogenic) or caused by an identifiable disease process such as traumatic injuries, neoplasms, or other macroscopic or microscopic lesions of the frontal lobes (symptomatic frontal lobe seizures).
Frontal lobe epilepsy
disease_ontology
DOID:3331
frontal lobe epilepsy
http://www.case.edu/EpSO.owl#FrontalLobeEpilepsy
true
A localization-related (focal) form of epilepsy characterized by seizures which arise in the frontal lobe. A variety of clinical syndromes exist depending on the exact location of the seizure focus. Frontal lobe seizures may be idiopathic (cryptogenic) or caused by an identifiable disease process such as traumatic injuries, neoplasms, or other macroscopic or microscopic lesions of the frontal lobes (symptomatic frontal lobe seizures).
http://purl.obolibrary.org/obo/MONDO_0002612
A bone disease that results_in inflammation of the located_in bone.
CSP2005:2715-2703
MESH:D010000
SNOMEDCT_US_2018_03_01:44462005
UMLS_CUI:C0029400
Inflammatory disorder of bone
bone inflammatory disease
osteitis
disease_ontology
DOID:3342
bone inflammation disease
An artery disease that is characterized by plaque building up along the inner walls of the arteries of the heart resulting in a narrowing of the arteries and a reduced blood supply to the cardiac muscles.
DOID:10506
DOID:3363
DOID:3394
DOID:9420
https://www.ncbi.nlm.nih.gov/pubmed/32014726
CSP2005:1393-3397
EFO:0001645
ICD10CM:I20-I25
ICD10CM:I25
ICD10CM:I25.1
ICD10CM:I25.10
ICD10CM:I25.9
ICD10CM:K76.1
ICD9CM:410-414.99
ICD9CM:414.0
ICD9CM:414.9
MESH:D003324
MESH:D003327
MESH:D017202
NCI2004_11_17:C26732
NCI:C35505
NCI:C50625
OMIM:300464
OMIM:607339
OMIM:608316
OMIM:608318
OMIM:608320
OMIM:610947
OMIM:611139
OMIM:612030
OMIM:614293
SNOMEDCT_US_2018_03_01:2610009
SNOMEDCT_US_2018_03_01:32598000
SNOMEDCT_US_2018_03_01:41702007
SNOMEDCT_US_2018_03_01:53741008
SNOMEDCT_US_2018_03_01:84537008
UMLS_CUI:C0010054
UMLS_CUI:C0010068
UMLS_CUI:C0151744
UMLS_CUI:C0264694
CHD
Coronary disease
coronary arteriosclerosis
coronary heart disease
disease_ontology
DOID:3393
Xref MGI.
coronary artery disease
true
A cerebrovascular disease that is characterized by tissue necrosis located_in the brain, resulting from inadequate blood flow through the brain.
MESH:D020520
UMLS_CUI:C0751955
disease_ontology
DOID:3454
brain infarction
A skin disease where there is a diffuse infection of connective tissue with severe inflammation of dermal and subcutaneous layers of the skin. Cellulitis can be caused by normal skin flora or by exogenous bacteria, and often occurs where the skin has previously been broken: cracks in the skin, cuts, blisters, burns, insect bites, surgical wounds, or sites of intravenous catheter insertion.
DOID:2472
ICD10CM:L03.90
MESH:D002481
NCI:C26715
NCI:C34454
SNOMEDCT_US_2018_03_01:62837005
SNOMEDCT_US_2018_03_01:74276003
UMLS_CUI:C0007642
UMLS_CUI:C0007646
disease_ontology
DOID:3488
cellulitis
A cerebrovascular disease that is characterized by an area of necrotic tissue in the brain resulting from a blockage or narrowing in the arteries supplying blood and oxygen to the brain.
https://www.ncbi.nlm.nih.gov/pubmed/30022372
ICD10CM:I63
ICD10CM:I63.9
MESH:D002544
NCI:C50486
OMIM:601367
SNOMEDCT_US_2018_03_01:20059004
UMLS_CUI:C0007785
CVA - Cerebral infarction
Cerebral infarct
Cerebral infarction
disease_ontology
DOID:3526
cerebral infarction
http://www.case.edu/EpSO.owl#CerebralInfarction
true
A central nervous system cancer that are manifested in the central nervous system and arise from the arachnoid cap cells of the arachnoid villi in the meninges.
DOID:1137
DOID:3554
DOID:3567
DOID:4750
https://www.ncbi.nlm.nih.gov/pubmed/31604333
GARD:7015
ICD10CM:D32.9
ICDO:M9530/3
MESH:D008577
MESH:D008579
NCI:C3229
NCI:C3230
NCI:C4656
NCI:C6971
NCI:C7048
UMLS_CUI:C0025284
UMLS_CUI:C0025286
UMLS_CUI:C0349604
UMLS_CUI:C1334698
UMLS_CUI:C1336537
intracranial meningioma
meningeal neoplasm
meningothelial cell tumor
neoplasm of the meninges
primary Meningeal tumor
supratentorial meningioma
disease_ontology
DOID:3565
meningioma
http://www.case.edu/EpSO.owl#Meningioma
true
A nervous system cancer that is located_in the central nervous system.
DOID:0060093
DOID:1318
CSP2005:2012-5421
EFO:0000326
ICD10CM:C72.9
MESH:D016543
NCI2004_11_17:C4627
NCI2004_11_17:C9293
NCI:C4627
NCI:C9293
SNOMEDCT_US_2018_03_01:93744007
UMLS_CUI:C0085136
UMLS_CUI:C0348374
CNS neoplasm
central nervous system tumor
central nervous system tumors
malignant neoplasm of central nervous system
malignant tumor of CNS
neoplasm of central nervous system
disease_ontology
DOID:3620
central nervous system cancer
A urinary system disease that is located_in the bladder.
ICD10CM:N32.9
ICD9CM:596.9
MESH:D001745
NCI:C2900
SNOMEDCT_US_2018_03_01:42643001
UMLS_CUI:C0005686
Urinary Bladder Disease
disease_ontology
DOID:365
bladder disease
A mitochondrial encephalomyopathy that is characterized by mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes, has_symptom myalgia, motor weakness, headaches, seizures, and stroke-like episodes with acute hemiparesis and severe headaches, and develops_from mutation in mitochondrial genes including MT-TL1, which encodes tRNA proteins.
ICD10CM:E88.41
MESH:D017241
NCI:C84885
OMIM:540000
SNOMEDCT_US_2018_03_01:39925003
UMLS_CUI:C0162671
MELAS (mitochondrial encephalopathy with lactic acidosis and stroke-like episodes) frequently leads to seizures, especially during acute stroke-like episodes where focal seizures arise in the involved cortical areas. Epilepsia partialis continua may occur.
MELAS
MITOCHONDRIAL MYOPATHY, ENCEPHALOPATHY, LACTIC ACIDOSIS, AND STROKE-LIKE EPISODES
Mitochondrial encephalopathy with lactic acidosis and stroke-like episodes
disease_ontology
DOID:3687
OMIM mapping confirmed by DO. [SN].
MELAS syndrome
http://www.case.edu/EpSO.owl#MitochondrialEncephalomyopathyLacticAcidosisStrokelikeEpisodes
true
MELAS (mitochondrial encephalopathy with lactic acidosis and stroke-like episodes) frequently leads to seizures, especially during acute stroke-like episodes where focal seizures arise in the involved cortical areas. Epilepsia partialis continua may occur.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#mitochondrial
An integumentary system disease that is located_in skin.
DOID:1576
DOID:1698
DOID:187
DOID:6486
DOID:8948
ICD9CM:702
MESH:D012871
MESH:D012873
NCI:C27554
NCI:C3371
SNOMEDCT_US_2018_03_01:5613003
SNOMEDCT_US_2018_03_01:80659006
SNOMEDCT_US_2018_03_01:95320005
UMLS_CUI:C0029574
UMLS_CUI:C0037274
UMLS_CUI:C0037277
Genodermatosis
skin and subcutaneous tissue disease
disease_ontology
DOID:37
skin disease
An acquired metabolic disease that is characterized by an insufficient intake of food or of certain nutrients, by an inability of the body to absorb and use nutrients, or by overconsumption of certain foods.
MESH:D009748
NCI2004_11_17:C26836
NCI:C26836
SNOMEDCT_US_2018_03_01:2492009
UMLS_CUI:C3714509
Nutritional disorder
disease_ontology
DOID:374
nutrition disease
A primary bacterial infectious disease that is located_in lungs, located_in lymph nodes, located_in pericardium, located_in brain, located_in pleura or located_in gastrointestinal tract, has_material_basis_in Mycobacterium tuberculosis, which is transmitted_by droplets released into the air when an infected person coughs or sneezes.
DOID:10096
DOID:12688
DOID:12691
DOID:415
DOID:9901
DOID:9902
GARD:7827
MESH:D014375
SNOMEDCT_US_2018_03_01:15202009
UMLS_CUI:C0041295
Seizures can occur in meningo-tuberculosis due to cerebral vasculitis and infarction, especially in young children and in people co-infected with HIV. Seizures with focal features may also occur as a consequence of tuberculomas, identified as ring-enhancing lesions on neuroimaging.
disease_ontology
DOID:399
tuberculosis
true
Seizures can occur in meningo-tuberculosis due to cerebral vasculitis and infarction, especially in young children and in people co-infected with HIV. Seizures with focal features may also occur as a consequence of tuberculomas, identified as ring-enhancing lesions on neuroimaging.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
MESH:D004194
NCI:C2991
SNOMEDCT_US_2020_09_01:64572001
UMLS_CUI:C0012634
disease_ontology
DOID:4
disease
DOID:2164
DOID:2165
DOID:46
ICD10CM:K70-K77
ICD10CM:K76.9
ICD9CM:573.9
MESH:D008107
NCI2004_11_17:C3196
NCI:C3196
SNOMEDCT_US_2018_03_01:62857009
UMLS_CUI:C0023895
disorder of liver
hepatic disorder
disease_ontology
DOID:409
liver disease
https://www.epilepsy.com/learn/professionals/co-existing-disorders/gastrointestinal-liver-disease
true
A communication disorder that is a loss of ability to recognize objects, persons, sounds, shapes, or smells while the specific sense is not defective nor is there any significant memory loss.
DOID:4019
GARD:8
ICD10CM:R48.1
ICD10CM:R48.2
MESH:D000377
MESH:D001072
NCI:C84542
SNOMEDCT_US_2018_03_01:42341009
SNOMEDCT_US_2018_03_01:68345001
SNOMEDCT_US_2018_03_01:6950007
UMLS_CUI:C0001816
UMLS_CUI:C0003635
Dyspraxia
Dyspraxia syndrome
disease_ontology
DOID:4090
agnosia
An immune system disease that is an overactive immune response of the body against substances and tissues normally present in the body resulting from an abnormal functioning of the immune system that results in the production of antibodies or T cell directed against the host tissues.
autoimmune disease
https://www.ncbi.nlm.nih.gov/pubmed/30562654
ICD9CM:720
OMIM:109100
UMLS_CUI:C0003089
autoimmune disease
hypersensitivity reaction type II disease
disease_ontology
DOID:417
Xref MGI.
autoimmune hypersensitivity disease
true
true
MESH:D044882
NCI:C53655
UMLS_CUI:C1257958
disorder of glucose metabolism
disease_ontology
DOID:4194
glucose metabolism disease
https://www.ncbi.nlm.nih.gov/pubmed/21851492
MESH:D023921
NCI:C80427
UMLS_CUI:C0242231
Coronary artery stenosis
disease_ontology
DOID:4248
coronary stenosis
true
An autoimmune disease of the nervous system that has_material_basis_in antibodies to acetylcholine receptors at the neuromuscular junction, has_symptom ptosis, has_symptom diplopia, has_symptom dysphagia, has_symptom dysarthria, has_symptom muscle weakness and has_symptom dyspnea.
DOID:443
DOID:444
https://www.ncbi.nlm.nih.gov/pubmed/30562654
GARD:7122
ICD10CM:G70.0
ICD10CM:G70.00
ICD9CM:358.0
ICD9CM:358.00
MESH:D009157
NCI:C60989
OMIM:254200
SNOMEDCT_US_2018_03_01:91637004
UMLS_CUI:C0026896
UMLS_CUI:C1260409
disease_ontology
DOID:437
OMIM mapping confirmed by DO. [SN].
myasthenia gravis
true
true
An autoimmune hypersensitivity disease affecting the nervous system.
CSP2005:1560-5548
MESH:D020274
NCI:C99383
UMLS_CUI:C0751871
disease_ontology
autoimmune nervous system disorder
DOID:438
autoimmune disease of the nervous system
A reading disorder resulting from a developmental reading disability involving the inability to process graphic symbols resulting in impairment of reading ability.
ICD10CM:F81.0
MESH:D004410
NCI:C96410
OMIM:300509
OMIM:600202
OMIM:604254
OMIM:606616
OMIM:606896
OMIM:608995
SNOMEDCT_US_2018_03_01:52824009
SNOMEDCT_US_2018_03_01:59770006
SNOMEDCT_US_2018_03_01:9236007
UMLS_CUI:C0476254
disease_ontology
DOID:4428
Xref MGI.
dyslexia
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
true
A writing disorder that involves a deficiency in the ability to write where the writing is distorted or incorrect, spelling difficulty, poor handwriting or trouble putting thoughts on paper.
https://www.ncbi.nlm.nih.gov/pubmed/26132164
ICD10CM:R48.8
MESH:D000381
SNOMEDCT_US_2018_03_01:27206009
UMLS_CUI:C0001825
disease_ontology
DOID:4540
dysgraphia
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
true
An amnestic disorder that involves a loss of one's pre-existing memories to conscious recollection.
ICD10CM:R41.2
MESH:D000648
NCI:C34372
SNOMEDCT_US_2018_03_01:51921000
UMLS_CUI:C0002624
disease_ontology
DOID:4543
retrograde amnesia
true
A brain disease that is characterized by excess accumulation of fluid in the intracellular and/or extracellular spaces of the brain, has_symptom nausea, has_symptom vomiting, has_symptom blurred vision, has_symptom seizure, has_symptom coma.
https://www.ncbi.nlm.nih.gov/pubmed/6527775
CSP2005:0485-0998
MESH:D001929
SNOMEDCT_US_2018_03_01:2032001
SNOMEDCT_US_2018_03_01:85974009
UMLS_CUI:C1527311
intracranial swelling
wet brain
disease_ontology
DOID:4724
brain edema
true
A disease of mental health that involves physical symptoms suggesting a physical illness where the biological or medical cause of the symptoms is indeterminate.
DOID:10133
DOID:144
CSP2005:2482-7019
ICD10CM:F45
ICD10CM:F45.0
ICD10CM:F45.9
ICD9CM:300.8
ICD9CM:300.81
MESH:D013001
NCI:C34956
SNOMEDCT_US_2018_03_01:31297008
SNOMEDCT_US_2018_03_01:60368009
SNOMEDCT_US_2018_03_01:9514005
UMLS_CUI:C0037650
UMLS_CUI:C0520482
physiological malfunction arising from mental factor
psychophysiologic disorder
psychosomatic disorder
disease_ontology
DOID:4737
somatoform disorder
A brain disease that is characterized by a clinical syndrome of either hyperkinetic movement or hyperkinetic movement unrelated to weakness or spasticity.
MESH:D009069
NCI:C116757
SNOMEDCT_US_2018_03_01:60342002
UMLS_CUI:C0026650
disease_ontology
DOID:480
movement disease
An astrocytoma that is characterized by cells that look like fibers when viewed under a microscope and is located_in the brain.
GARD:9808
MESH:D001254
NCI2004_11_17:C4047
NCI:C4047
SNOMEDCT_US_2018_03_01:67859002
UMLS_CUI:C0334583
Piloid astrocytoma
grade I Astrocytic tumor
disease_ontology
DOID:4851
pilocytic astrocytoma
http://www.case.edu/EpSO.owl#PilocyticAstrocytoma
https://www.ncbi.nlm.nih.gov/pubmed/31361236
NCI2004_11_17:C4323
NCI:C4323
SNOMEDCT_US_2018_03_01:78838008
UMLS_CUI:C0334586
Pleomorphic Xantho-astrocytoma
disease_ontology
DOID:4852
pleomorphic xanthoastrocytoma
http://www.case.edu/EpSO.owl#PleomorhicXanthoastrocytoma
true
A adolescence-adult electroclinical syndrome that is characterized by brief, involuntary twitching of a muscle or a group of muscles (myoclonus) early in the morning with onset between 12 and 18 years.
DOID:0050326
GARD:6808
MESH:D020190
NCI:C84796
OMIM:254770
ORDO:307
ORDO:862
SNOMEDCT_US_2018_03_01:6204001
UMLS_CUI:C0270853
This syndrome is one of the most common genetic/idiopathic generalized epilepsies and is characterized by myoclonic and generalized tonic-clonic seizures in an otherwise normal adolescent or adult. The EEG shows generalized spike-and-wave and polyspike-and-wave. Photosensitivity is common.
Janz syndrome
disease_ontology
DOID:4890
Xref MGI.
OMIM mapping confirmed by DO. [SN].
juvenile myoclonic epilepsy
http://www.case.edu/EpSO.owl#JuvenileMyoclonicEpilepsy
true
true
This syndrome is one of the most common genetic/idiopathic generalized epilepsies and is characterized by myoclonic and generalized tonic-clonic seizures in an otherwise normal adolescent or adult. The EEG shows generalized spike-and-wave and polyspike-and-wave. Photosensitivity is common.
https://www.epilepsydiagnosis.org/syndrome/jme-overview.html
An endocrine system disease that is located_in the thyroid.
https://www.ncbi.nlm.nih.gov/pubmed/18777476
https://www.ncbi.nlm.nih.gov/pubmed/26362394
ICD10CM:E00-E07
ICD10CM:E07.9
ICD9CM:240-246.99
ICD9CM:246.9
MESH:D013959
NCI:C26893
SNOMEDCT_US_2018_03_01:14304000
UMLS_CUI:C0040128
Transient ischemic attack
disease_ontology
Thyroid hormone abnormalities
DOID:50
thyroid gland disease
true
A cell type benign neoplasm that has_material_basis_in glial-type cells.
DOID:5606
DOID:5607
GARD:2430
MESH:D018303
NCI:C27362
NCI:C27363
NCI:C3788
SNOMEDCT_US_2018_03_01:89880005
UMLS_CUI:C0206716
UMLS_CUI:C1332202
UMLS_CUI:C1332969
A gangliogliomas is a glioneuronal tumor that is cortically based, and may have a solid and/or multicystic appearance. Histologically, gangliogliomas are characterized by large ganglion-like cells, intermixed with glial (predominantly astrocytic) cells. They are commonly found in the temporal lobes, but can be found elsewhere. They may co-occur with adjacent focal cortical dysplasia (FCD IIIb), suggesting a common developmental etiology for both structural abnormalities.
CNS ganglioglioma
adult ganglioglioma
childhood ganglioglioma
disease_ontology
DOID:5078
ganglioglioma
http://www.case.edu/EpSO.owl#Ganglioglioma
true
A gangliogliomas is a glioneuronal tumor that is cortically based, and may have a solid and/or multicystic appearance. Histologically, gangliogliomas are characterized by large ganglion-like cells, intermixed with glial (predominantly astrocytic) cells. They are commonly found in the temporal lobes, but can be found elsewhere. They may co-occur with adjacent focal cortical dysplasia (FCD IIIb), suggesting a common developmental etiology for both structural abnormalities.
https://www.epilepsydiagnosis.org/aetiology/ganglioglioma-overview.html
A nutrition disease that is characterized by deficiency of a nutritional element, such as a vitamin, mineral, carbohydrate, protein, fat, or general energy content.
MESH:D003677
UMLS_CUI:C0011156
disease_ontology
DOID:5113
nutritional deficiency disease
https://www.epilepsy.com/learn/triggers-seizures/nutritional-deficiencies
true
A viral infectious disease that results in destruction of immune system, leading to life-threatening opportunistic infections and cancers, has_material_basis_in Human immunodeficiency virus 1 or has_material_basis_in Human immunodeficiency virus 2, which are transmitted by sexual contact, transmitted by transfer of blood, semen, vaginal fluid, pre-ejaculate, or breast milk, transmitted by congenital method, and transmitted by contaminated needles. The virus infects helper T cells (CD4+ T cells) which are directly or indirectly destroyed, macrophages, and dendritic cells. The infection has symptom diarrhea, has symptom fatigue, has symptom fever, has symptom vaginal yeast infection, has symptom headache, has symptom mouth sores, has symptom muscle aches, has symptom sore throat, and has symptom swollen lymph glands.
CSP2005:1560-6305
ICD10CM:B20
ICD10CM:B20-B20
ICD9CM:042
ICD9CM:042-042.99
MESH:D015658
NCI:C3108
SNOMEDCT_US_2018_03_01:86406008
UMLS_CUI:C0019693
Seizures can result from primary cerebral HIV infection, especially in children. In adults, most seizures are cause by related opportunistic central nervous system infections such as toxoplasmosis, cryptococcal meningitis and tuberculomas; or due to secondary neoplastic lesions.
HIV
HIV infection
disease_ontology
DOID:526
human immunodeficiency virus infectious disease
true
Seizures can result from primary cerebral HIV infection, especially in children. In adults, most seizures are cause by related opportunistic central nervous system infections such as toxoplasmosis, cryptococcal meningitis and tuberculomas; or due to secondary neoplastic lesions.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
A gastrointestinal system disease that is located_in the intestine.
DOID:10759
DOID:11222
DOID:11789
DOID:8531
DOID:8558
DOID:8591
ICD10CM:K63.9
ICD9CM:569.9
MESH:D007410
NCI:C26801
SNOMEDCT_US_2018_03_01:85919009
UMLS_CUI:C0021831
disease_ontology
DOID:5295
intestinal disease
An amnestic disorder that involves the impaired or lost ability to memorize new things.
ICD10CM:R41.1
MESH:D020324
SNOMEDCT_US_2018_03_01:88822006
UMLS_CUI:C0233795
disease_ontology
DOID:5340
anterograde amnesia
true
A disease of mental health that involves disruption of sleep patterns.
DOID:9028
ICD9CM:307.4
UMLS_CUI:C0154564
Non-organic sleep disorder
disease_ontology
DOID:535
sleep disorder
http://www.case.edu/EpSO.owl#SleepDisorder
https://www.epilepsy.com/learn/professionals/co-existing-disorders/sleep-disorders
https://www.ncbi.nlm.nih.gov/pubmed/30924504
NCI:C7739
UMLS_CUI:C0238814
disease_ontology
DOID:5393
brain angioma
true
A psychotic disorder that is characterized by a disintegration of thought processes and of emotional responsiveness.
DOID:14734
https://www.ncbi.nlm.nih.gov/pubmed/8252282
EFO:0000692
ICD10CM:F20
ICD10CM:F20.9
ICD9CM:295
ICD9CM:295.9
ICD9CM:295.90
MESH:D012559
NCI:C3362
OMIM:181500
SNOMEDCT_US_2018_03_01:58214004
UMLS_CUI:C0036341
schizophrenia-1
disease_ontology
DOID:5419
Xref MGI.
OMIM mapping confirmed by DO. [SN].
schizophrenia
http://www.case.edu/EpSO.owl#Schizophrenia
true
true
A urinary system disease that is located_in the kidney.
EFO:0003086
ICD10CM:N08
ICD10CM:N28.9
MESH:D007674
NCI:C3149
NCI:C34843
SNOMEDCT_US_2018_03_01:90708001
UMLS_CUI:C0022658
Renal Disorders
nephropathy
disease_ontology
DOID:557
kidney disease
https://www.epilepsy.com/learn/professionals/co-existing-disorders/renal-disorders
true
An eye and adnexa disease that is located_in the eye.
DOID:2933
ICD10CM:H44
ICD10CM:H44.9
ICD9CM:360
ICD9CM:360.9
ICD9CM:379.90
MESH:D005128
NCI:C26767
SNOMEDCT_US_2018_03_01:79517001
UMLS_CUI:C0015397
disease_ontology
DOID:5614
eye disease
A neuropathy that is located_in one of the twelve cranial nerves.
ICD10CM:G52.9
ICD9CM:352.9
MESH:D003389
NCI2004_11_17:C26733
NCI:C26733
SNOMEDCT_US_2018_03_01:73013002
UMLS_CUI:C0010266
Cranial nerve disorder
disorder of cranial nerve
disease_ontology
DOID:5656
cranial nerve disease
A nervous system disease that affects the peripheral nervous system.
DOID:13069
CSP2005:2042-6617
ICD10CM:G64
ICD9CM:350-359.99
MESH:D010523
MTH:516
NCI:C119734
NCI:C27580
NCI:C27587
SNOMEDCT_US_2018_03_01:42658009
UMLS_CUI:C0031117
UMLS_CUI:C1335029
disease_ontology
peripheral nerve disease
peripheral neuropathy
DOID:574
peripheral nervous system disease
A coronary artery disease characterized by myocardial cell death (myocardial necrosis) due to prolonged ischaemia.
https://www.ncbi.nlm.nih.gov/pubmed/19655091
CSP2005:1393-3417
EFO:0000612
ICD10CM:I21
ICD10CM:I22
MESH:D009203
NCI:C27996
OMIM:608557
SNOMEDCT_US_2018_03_01:22298006
SNOMEDCT_US_2018_03_01:66514008
UMLS_CUI:C0027051
Myocardial infarct
heart attack
disease_ontology
DOID:5844
Xref MGI.
myocardial infarction
true
An anxiety disorder where fear and anxiety are triggered by a specific stimulus or situation.
ICD10CM:F40
ICD10CM:F40.9
ICD9CM:300.2
ICD9CM:300.20
MESH:D010698
NCI:C35420
SNOMEDCT_US_2018_03_01:52039009
SNOMEDCT_US_2018_03_01:65673007
UMLS_CUI:C0349231
disease_ontology
DOID:591
phobic disorder
A phobic disorder involving the specific anxiety about being in a place or situation where escape is difficult or embarrassing or where help may be unavailable.
ICD10CM:F40.0
ICD10CM:F40.00
MESH:D000379
NCI:C34362
SNOMEDCT_US_2018_03_01:70691001
UMLS_CUI:C0001818
Fear of open spaces
disease_ontology
DOID:593
agoraphobia
true
An anxiety disorder that is characterized by unexpected and repeated episodes of intense fear accompanied by physical symptoms that may include chest pain, heart palpitations, shortness of breath, dizziness, or abdominal distress.
https://www.ncbi.nlm.nih.gov/pubmed/30865078
CSP2005:4000-0280
EFO:0004262
ICD10CM:F41.0
MESH:D016584
NCI:C34890
OMIM:167870
OMIM:607853
OMIM:609985
UMLS_CUI:C0030319
panic anxiety syndrome
disease_ontology
DOID:594
Xref MGI.
panic disorder
true
A heart disease that is characterized by any structural or functional cardiac disorder that impairs the ability of the heart to fill with or pump a sufficient amount of blood throughout the body.
DOID:395
CSP2005:1393-3597
ICD10CM:I50
ICD10CM:I50.9
ICD9CM:428
ICD9CM:428.0
ICD9CM:428.9
MESH:D006333
MTHICD9_2006:428.0
MTHICD9_2006:428.9
NCI2004_11_17:C3080
NCI:C3080
NCI:C50577
SNOMEDCT_US_2018_03_01:42343007
SNOMEDCT_US_2018_03_01:84114007
UMLS_CUI:C0018801
UMLS_CUI:C0018802
CHF
Cardiac Failure Congestive
Congestive heart disease
Weak heart
disease_ontology
DOID:6000
congestive heart failure
https://www.epilepsy.com/learn/professionals/co-existing-disorders/cardiac-disorders
true
A disease that has_material_basis_in genetic variations in the human genome.
MESH:D030342
NCI:C3101
SNOMEDCT_US_2018_03_01:32895009
UMLS_CUI:C0019247
disease_ontology
DOID:630
genetic disease
A Human immunodeficiency virus infectious disease that results_in reduction in the numbers of CD4-bearing helper T cells below 200 per ��L of blood or 14% of all lymphocytes thereby rendering the subject highly vulnerable to life-threatening infections and cancers, has_material_basis_in Human immunodeficiency virus 1 or has_material_basis_in Human immunodeficiency virus 2, which are transmitted_by sexual contact, transmitted_by transfer of blood, semen, vaginal fluid, pre-ejaculate, or breast milk, transmitted_by congenital method, and transmitted_by contaminated needles. Opportunistic infections are common in people with AIDS.
https://www.ncbi.nlm.nih.gov/pubmed/10474720
EFO:0000765
ICD10CM:B20
MESH:D000163
NCI2004_11_17:C2851
NCI:C2851
SNOMEDCT_US_2018_03_01:62479008
UMLS_CUI:C0001175
AIDS
acquired Immune deficiency
disease_ontology
acquired immune deficiency syndrome
DOID:635
acquired immunodeficiency syndrome
https://www.epilepsy.com/learn/professionals/co-existing-disorders/infectious-states-seizures/viral-infections/human
true
true
A brain disease that is characterized by moderate to severe headaches, nausea, extreme sensitivity to light and sound and intense unilaterial throbbing or pulsing.
DOID:12437
EFO:0003821
ICD10CM:G43
ICD10CM:G43.9
ICD10CM:G43.909
ICD9CM:346
ICD9CM:346.9
MESH:D008881
NCI:C89715
OMIM:157300
SNOMEDCT_US_2018_03_01:37796009
UMLS_CUI:C0042331
UMLS_CUI:C0149931
migraine disorder
migraine variant
migraine with or without aura
disease_ontology
DOID:6364
Xref MGI.
OMIM mapping confirmed by DO. [SN].
migraine
https://www.epilepsy.com/learn/professionals/co-existing-disorders/migraine-epilepsy
true
true
An encephalitis that involves inflammation of the brain caused by viral infection.
DOID:10248
DOID:10249
DOID:10839
CSP2005:2042-4896
MESH:D004671
NCI:C34576
SNOMEDCT_US_2018_03_01:20411005
SNOMEDCT_US_2018_03_01:68197003
UMLS_CUI:C0014055
Encephalitis is a recognized complication of infections with a number of viruses. Herpes simplex virus type 1 is the most common viral cause. Affected individuals present with acute encephalopathy and seizures, epilepsy develops in around 50% of cases. Other less common etiologies for viral encephalitis include human herpes virus 6 (associated with acute limbic encephalitis and febrile status epilepticus), influenza B, varicella, measles, mumps and rubella viruses.
epidemic encephalitis
disease_ontology
DOID:646
viral encephalitis
true
Encephalitis is a recognized complication of infections with a number of viruses. Herpes simplex virus type 1 is the most common viral cause. Affected individuals present with acute encephalopathy and seizures, epilepsy develops in around 50% of cases. Other less common etiologies for viral encephalitis include human herpes virus 6 (associated with acute limbic encephalitis and febrile status epilepticus), influenza B, varicella, measles, mumps and rubella viruses.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
A musculoskeletal system disease that affects tissues such as skin, tendons, and cartilage.
CSP2005:0729-7208
MESH:D003240
NCI:C26729
UMLS_CUI:C0009782
connective tissue disorder
disorder of connective tissue
disease_ontology
DOID:65
connective tissue disease
A nutrition disease that is characterized by an excess of a nutritional element, such as a vitamin, mineral, carbohydrate, protein, fat, or general energy content.
MESH:D044343
UMLS_CUI:C1257763
disease_ontology
DOID:654
Updated outdated UMLS CUI.
overnutrition
A disease of metabolism that is characterized by enzyme deficiency or accumulation of enzymes or toxins which interfere with normal function due to inherited enzyme abnormality.
CSP2005:1849-0057
MESH:D008661
NCI2004_11_17:C34816
NCI:C34816
SNOMEDCT_US_2018_03_01:86095007
UMLS_CUI:C0025521
Inborn Errors of Metabolism
Metabolic hereditary disorder
inborn metabolism disorder
disease_ontology
DOID:655
inherited metabolic disorder
A brain angioma that is characterized by vascular abnormalities that develops from cranial and spinal blood vasculature, has_material_basis_in abnormally proliferating cells, derives_from endothelial cells in and about the vascular lumen.
NCI2004_11_17:C5433
NCI:C5433
UMLS_CUI:C0877388
Cerebral angiomas are vascular abnormalities comprised of clusters of abnormally dilated blood vessels. They can be singular or multiple, and are found in the brain, spinal cord, and rarely, in other areas of the body including the skin and retina.
hemangioma of Cerebrum
disease_ontology
DOID:6621
cerebral angioma
true
Cerebral angiomas are vascular abnormalities comprised of clusters of abnormally dilated blood vessels. They can be singular or multiple, and are found in the brain, spinal cord, and rarely, in other areas of the body including the skin and retina.
https://www.epilepsydiagnosis.org/aetiology/cerebral-angioma-overview.html
An vascular disease that is characterized by dysfunction of the blood vessels supplying the brain.
DOID:12214
DOID:3455
DOID:8231
CSP2005:0617-5539
EFO:0000712
ICD10CM:I60-I69
ICD10CM:I63.9
ICD10CM:I67.9
ICD9CM:430-438.99
ICD9CM:437.9
MESH:D002561
MESH:D020521
NCI:C2938
NCI:C3390
SNOMEDCT_US_2018_03_01:62914000
SNOMEDCT_US_2018_03_01:82797006
UMLS_CUI:C0007820
UMLS_CUI:C0038454
CVA
Cerebrovascular accident
cerebrovascular accident
cerebrovascular disorder
stroke
disease_ontology
DOID:6713
OMIM mapping confirmed by DO. [SN].
cerebrovascular disease
http://www.case.edu/EpSO.owl#CerebrovascularDisease
A neurodegenerative disease that has_material_basis_in the pathological aggregation of tau protein in so-called neurofibrillary tangles (NFT) in the human brain.
MESH:D024801
UMLS_CUI:C0949664
disease_ontology
DOID:680
tauopathy
A disease that manifests in a defined anatomical structure.
DOID:1
DOID:2
DOID:5
DOID:71
DOID:72
DOID:8
disease_ontology
DOID:7
disease of anatomical entity
An arthritis that is an autoimmune disease which attacks healthy cells and tissue located_in joint.
https://www.ncbi.nlm.nih.gov/pubmed/27856781
EFO:0000685
ICD10CM:M06.9
ICD9CM:714.0
KEGG:05323
MESH:D001172
MTHICD9_2006:714.0
NCI2004_11_17:C27206
NCI:C2884
OMIM:180300
SNOMEDCT_US_2018_03_01:69896004
UMLS_CUI:C0003873
Arthritis or polyarthritis, rheumatic
atrophic Arthritis
disease_ontology
DOID:7148
OMIM mapping confirmed by DO. [SN].
rheumatoid arthritis
https://www.healio.com/rheumatology/rheumatoid-arthritis/news/online/%7Bc65ca682-7bc8-4bae-8c69-45b38526cf5e%7D/patients-with-ra-may-be-at-higher-risk-for-epilepsy
true
true
A disease of anatomical entity that is located_in the gastrointestinal tract.
DOID:27
DOID:944
CSP2005:1248-3545
ICD10CM:K92.9
ICD9CM:520-579.99
MESH:D004066
SNOMEDCT_US_2018_03_01:53619000
UMLS_CUI:C0012242
GIT disease
Gastroenteropathy
alimentary system disease
digestive system disorder
gastrointestinal disease
gastrointestinal disorder
disease_ontology
DOID:77
gastrointestinal system disease
An adolescence-adult electroclinical syndrome starting in adolescence exhibiting generalized tonic-clonic seizures as the only seizure type.
MESH:D004830
MTHICD9_2006:345.1
NCI2004_11_17:C3022
NCI:C3022
UMLS_CUI:C0014549
This syndrome (previously known as epilepsy with grand mal seizures on awakening) is a common genetic/idiopathic generalized epilepsy. Individuals have infrequent generalized tonic-clonic seizures from the second decade of life, typically provoked by sleep deprivation.
Epilepsy with generalized tonic-clonic seizure alone
Epileptic seizures, tonic-clonic
Grand Mal epilepsy
Primary generalized tonic-clonic seizure
tonic-clonic epilepsy
disease_ontology
DOID:7725
JA:Epilepsy Genetics Kiel
epilepsy with generalized tonic-clonic seizures
true
This syndrome (previously known as epilepsy with grand mal seizures on awakening) is a common genetic/idiopathic generalized epilepsy. Individuals have infrequent generalized tonic-clonic seizures from the second decade of life, typically provoked by sleep deprivation.
https://www.epilepsydiagnosis.org/syndrome/egtcsa-overview.html
A thyroid gland disease that involves an over production of thyroid hormone.
ICD10CM:E05.9
MESH:D006980
NCI2004_11_17:C3123
NCI:C3123
OMIM:603373
OMIM:609152
ORDO:99819
SNOMEDCT_US_2018_03_01:34486009
UMLS_CUI:C0020550
overactive thyroid
disease_ontology
DOID:7998
Xref MGI.
hyperthyroidism
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/hyperthyroidism
true
A syndrome that is characterized by absence or underdeveloped tissue connecting the left and right halves of the brain, infantile spasms and chorioretinal lacunae, which are defects in the light-sensitive tissue at the back of the eye.
https://www.ncbi.nlm.nih.gov/pubmed/20301555
GARD:5764
MESH:D058540
NCI:C35256
OMIM:304050
ORDO:50
SNOMEDCT_US_2018_03_01:80651009
UMLS_CUI:C0175713
disease_ontology
DOID:8461
OMIM mapping confirmed by DO. [SN].
Aicardi syndrome
https://ghr.nlm.nih.gov/condition/aicardi-syndrome
true
A bone inflammation disease that involves a response to irritation or injury, characterized by joint pain, swelling, stiffness located_in joint and/or redness located_in skin over the joint.
ICD10CM:M19.90
MESH:D001168
NCI:C2883
SNOMEDCT_US_2018_03_01:3723001
UMLS_CUI:C0003864
Inflammatory disorder of joint
disease_ontology
DOID:848
arthritis
A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
DOID:11894
DOID:11895
DOID:29
DOID:766
ICD10CM:J98.4
MESH:D008171
NCI:C3198
SNOMEDCT_US_2018_03_01:19829001
UMLS_CUI:C0024115
disease_ontology
DOID:850
Updating out dated CUI and removing lung abscess as a synonym.
lung disease
An autoimmune disease of skin and connective tissue characterized by large blisters.
https://www.ncbi.nlm.nih.gov/pubmed/30562654
GARD:5972
ICD10CM:L12
ICD10CM:L12.0
ICD10CM:L12.9
ICD9CM:694.5
MESH:D010391
NCI:C34908
NCI:C84389
SNOMEDCT_US_2018_03_01:77090002
SNOMEDCT_US_2018_03_01:86142006
UMLS_CUI:C0030805
Bullous pemphigoid
disease_ontology
DOID:8506
bullous pemphigoid
true
https://www.ncbi.nlm.nih.gov/books/NBK2609/
ICD10CM:K21
ICD10CM:K21.9
ICD9CM:530.81
MESH:D005764
MTHICD9_2006:530.81
NCI2004_11_17:C26781
NCI:C26781
OMIM:109350
SNOMEDCT_US_2018_03_01:54856001
UMLS_CUI:C0017168
A chronic disorder characterized by reflux of the gastric and/or duodenal contents into the distal esophagus. It is usually caused by incompetence of the lower esophageal sphincter. Symptoms include heartburn and acid indigestion. It may cause injury to the esophageal mucosa.
Acid reflux
GERD
GERD - Gastro-esophageal reflux disease
Gastresophageal reflux
Gastro-esophageal reflux
Gastroesophageal reflux
Gastroesophageal reflux disease
disease_ontology
DOID:8534
OMIM mapping confirmed by DO. [SN].
gastroesophageal reflux disease
true
A chronic disorder characterized by reflux of the gastric and/or duodenal contents into the distal esophagus. It is usually caused by incompetence of the lower esophageal sphincter. Symptoms include heartburn and acid indigestion. It may cause injury to the esophageal mucosa.
http://purl.obolibrary.org/obo/MONDO_0007186
A disease of anatomical entity that is located_in the central nervous system or located_in the peripheral nervous system.
ICD10CM:G00-G99
ICD10CM:G98
ICD10CM:G98.8
ICD9CM:349.9
MESH:D009422
NCI:C26835
UMLS_CUI:C0027765
disease_ontology
DOID:863
nervous system disease
A nervous system disease that is located_in nerves or nerve cells.
ICD10CM:G62.9
NCI:C4731
SNOMEDCT_US_2018_03_01:42658009
UMLS_CUI:C0442874
peripheral neuropathy
disease_ontology
DOID:870
neuropathy
An intestinal disease that involves inflammation located_in intestine.
DOID:8784
DOID:8855
DOID:8942
https://www.ncbi.nlm.nih.gov/pubmed/26549780
EFO:0000384
GARD:10232
ICD10CM:K50.1
ICD9CM:555.1
MESH:D003424
NCI2004_11_17:C37262
NCI:C35211
NCI:C37262
SNOMEDCT_US_2018_03_01:50440006
SNOMEDCT_US_2018_03_01:7620006
UMLS_CUI:C0156147
Crohn disease
Crohn's disease of colon
Crohn's disease of large bowel
Granulomatous Colitis
Pediatric Crohn's disease
disease_ontology
DOID:8778
MESH:C536215 added from NeuroDevNet [WAK].
Crohn's disease
https://www.epilepsy.com/learn/professionals/co-existing-disorders/inflammatory-disorders
true
An autoimmune hypersensitivity disease that is characterized by a constellation of findings that include elevated antibodies to nuclear antigens, antiphospholipids, low complement levels, ulcers, non-scarring alopecia, renal or neurologic damage, and low white blood cell and platelet counts, has_symptom rashes, fatigue, arthritis, hair loss, seizures, and symptoms related to affected organs, and has_material_basis_in autoimmune disorder.
ICD10CM:L93
ICD10CM:L93.0
ICD9CM:695.4
NCI2004_11_17:C27153
NCI:C27153
UMLS_CUI:C0409974
lupus
disease_ontology
DOID:8857
lupus erythematosus
A central nervous system disease characterized by inflammation of the optic nerve (optic neuritis) and inflammation of the spinal cord (myelitis).
https://www.ncbi.nlm.nih.gov/pubmed/29379967
https://www.ncbi.nlm.nih.gov/pubmed/30562654
EFO:0004256
GARD:6267
ICD10CM:G36.0
ICD9CM:341.0
MESH:D009471
NCI:C84934
SNOMEDCT_US_2018_03_01:25044007
UMLS_CUI:C0027873
Devic's disease
Devic's syndrome
disease_ontology
DOID:8869
neuromyelitis optica
true
A skin disease that is characterized by patches of thick red skin and silvery scales.
https://www.ncbi.nlm.nih.gov/pubmed/24687183
EFO:0000676
GARD:10262
ICD10CM:L40
ICD10CM:L40.9
MESH:D011565
NCI:C3346
OMIM:PS177900
SNOMEDCT_US_2018_03_01:9014002
UMLS_CUI:C0033860
disease_ontology
DOID:8893
Xref MGI.
Update outdated UMLS CUI from C00295134 to C0033860.
psoriasis
true
A variable age at onset electroclinical syndrome characterised by a relentlessly progressive disease course until death.
GARD:7140
MESH:D020191
NCI2004_11_17:C7636
NCI:C7636
OMIM:310370
OMIM:PS254800
SNOMEDCT_US_2018_03_01:89480000
UMLS_CUI:C0751778
Progressive myoclonus epilepsy should considered in a patient with myoclonic seizures, with or without generalized tonic-clonic seizures in the following settings:
Progressive cognitive decline , Myoclonus resulting in progressive motor impairment, Cerebellar signs , Background slowing on EEG (particularly if increasing over time), Myoclonus that is refractory to trials of appropriate anti-seizure medication
PME
progressive Myoclonus epilepsy
progressive myoclonic epilepsy
disease_ontology
DOID:891
OMIM mapping confirmed by DO. [SN].
OMIM mapping submitted by NeuroDevNet. [LS].
progressive myoclonus epilepsy
true
true
Progressive myoclonus epilepsy should considered in a patient with myoclonic seizures, with or without generalized tonic-clonic seizures in the following settings:
Progressive cognitive decline , Myoclonus resulting in progressive motor impairment, Cerebellar signs , Background slowing on EEG (particularly if increasing over time), Myoclonus that is refractory to trials of appropriate anti-seizure medication
https://www.epilepsydiagnosis.org/syndrome/pme-overview.html
A specific developmental disorder that involves difficulty in scholastic skills such as reading, writing, spelling, reasoning, recalling and/or organizing information resulting from the brain's inability to receive and process information.
DOID:2847
CSP2005:2483-6402
ICD10CM:F81.9
MESH:D007859
NCI:C89334
SNOMEDCT_US_2018_03_01:1855002
UMLS_CUI:C0023186
UMLS_CUI:C0751265
Academic skill disorder
learning disorder
disease_ontology
DOID:8927
learning disability
true
A viral infectious disease that results_in infection located_in brain and that has_material_basis_in Measles virus which is immune resistant.
https://www.ncbi.nlm.nih.gov/pubmed/24073547
CSP2005:2042-2360
GARD:7708
ICD10CM:A81.1
ICD9CM:046.2
MESH:D013344
NCI:C85171
OMIM:260470
SNOMEDCT_US_2018_03_01:84196008
UMLS_CUI:C0038522
Immunosuppressive measles encephalitis
Subacute Sclerosing Panencephalitis
Subacute sclerosing panencephalitis
Van Bogaert's sclerosing leukoencephalitis
subacute sclerosing leukoencephalopathy
disease_ontology
DOID:8970
subacute sclerosing panencephalitis
true
A sleep disorder that involves an excessive urge to sleep at inappropriate times, such as while at work.
DOID:8985
CSP2005:2056-7716
EFO:0000614
GARD:7162
ICD10CM:G47.41
ICD10CM:G47.419
ICD9CM:347.0
MESH:D009290
NCI:C84489
OMIM:161400
OMIM:605841
OMIM:609039
OMIM:612417
OMIM:612851
OMIM:614223
OMIM:614250
ORDO:2073
SNOMEDCT_US_2018_03_01:60380001
UMLS_CUI:C0027404
Narcolepsy, without cataplexy
paroxysmal sleep
disease_ontology
DOID:8986
Xref MGI.
narcolepsy
http://www.case.edu/EpSO.owl#Narcolepsy
https://www.epilepsy.com/learn/professionals/co-existing-disorders/sleep-disorders/narcolepsy
true
An inherited metabolic disorder that involves peroxisome malfunction.
ICD10CM:E71.5
ICD10CM:E71.50
ICD9CM:277.86
ICD9CM_2006:277.86
MESH:D018901
NCI:C85005
UMLS_CUI:C0282528
Peroxisomal disorders are an uncommon cause of epilepsy, usually presenting with seizures in early life, in a neonate or infant with severe neurological impairment. Malformations of cortical development may co-occur in specific peroxisomal disorders, including Zellweger syndrome and neonatal adrenoleucodystrophy. Focal seizures, generalized seizures and epileptic spasms may occur. Diagnosis is through identification of abnormal levels of very long chain fatty acids.
Peroxisomal disorder
peroxisomal disorder
disease_ontology
DOID:906
peroxisomal disease
true
Peroxisomal disorders are an uncommon cause of epilepsy, usually presenting with seizures in early life, in a neonate or infant with severe neurological impairment. Malformations of cortical development may co-occur in specific peroxisomal disorders, including Zellweger syndrome and neonatal adrenoleucodystrophy. Focal seizures, generalized seizures and epileptic spasms may occur. Diagnosis is through identification of abnormal levels of very long chain fatty acids.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#peroxisomal
A lupus erythematosus that is an inflammation of connective tissue marked by skin rashes, joint pain and swelling, inflammation of the kidneys and inflammation of the tissue surrounding the heart.
https://www.ncbi.nlm.nih.gov/pubmed/25214788
CSP2005:0729-7721
EFO:0002690
GARD:10253
ICD10CM:M32
ICD10CM:M32.9
ICD9CM:710.0
KEGG:05322
MESH:D008180
MTH:U002054
NCI2004_11_17:C3201
NCI:C3201
OMIM:152700
OMIM:300809
OMIM:605480
OMIM:608437
OMIM:609903
OMIM:609939
OMIM:610065
OMIM:610066
OMIM:612254
OMIM:612378
OMIM:613145
OMIM:614420
ORDO:536
SNOMEDCT_US_2018_03_01:55464009
UMLS_CUI:C0024141
Lupus Erythematosus, systemic
SLE - Lupus Erythematosus, systemic
disseminated lupus erythematosus
disease_ontology
DOID:9074
Xref MGI.
systemic lupus erythematosus
true
true
A sleep disorder that involves abnormal behavior including the acting out of violent or dramatic dreams during the sleep phase with rapid eye movement.
https://www.ncbi.nlm.nih.gov/pubmed/29791879
ICD10CM:G47.52
ICD9CM:327.42
MESH:D020187
UMLS_CUI:C0751772
REM sleep disorders occur when the physiological REM atonia of dreaming sleep does not occur normally, causing individuals to act out the motor movements of their dreams. Kicking, running, shouting and even more complex movements can occur.
REM sleep behaviour disorder
REM sleep disorder
Rapid eye movement sleep behavior disorder
Rapid eye movement sleep behaviour disorder
Rapid eye movement sleep disorder
disease_ontology
DOID:9091
REM sleep behavior disorder
http://www.case.edu/EpSO.owl#RapidEyeMovementBehaviorDisorder
true
true
REM sleep disorders occur when the physiological REM atonia of dreaming sleep does not occur normally, causing individuals to act out the motor movements of their dreams. Kicking, running, shouting and even more complex movements can occur.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#rem
A communication disorder that involves difficulty with the act of speech production.
https://www.ncbi.nlm.nih.gov/pubmed/29241678
MESH:D013064
NCI:C5041
UMLS_CUI:C0037822
disease_ontology
DOID:92
speech disorder
true
A sleep disorder that involves involuntary limb movement during sleep.
ICD10CM:G47.61
ICD9CM:327.51
MESH:D020189
UMLS_CUI:C0751774
The movements occuring principally in stage 1 and 2 of non-rapid eye movement sleep and are characteristically repetitive stereotyped flexion of toes, ankles, knees and hips though sometimes the upper limbs may also flex.
Periodic leg movement
nocturnal myoclonus
disease_ontology
DOID:9207
periodic limb movement disorder
http://www.case.edu/EpSO.owl#PeriodicLimbMovementDisorder
https://www.epilepsy.com/learn/professionals/co-existing-disorders/sleep-disorders/periodic-limb-movements-and-restless-legs
true
true
The movements occuring principally in stage 1 and 2 of non-rapid eye movement sleep and are characteristically repetitive stereotyped flexion of toes, ankles, knees and hips though sometimes the upper limbs may also flex.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#per-legmov
An inherited metabolic disorder that is characterized by impaired synthesis and degradation of amino acids.
GARD:5793
ICD10CM:E72.9
ICD9CM:270
ICD9CM:270.9
MESH:D000592
NCI:C97090
SNOMEDCT_US_2018_03_01:42930003
SNOMEDCT_US_2018_03_01:44779003
UMLS_CUI:C0002514
inborn errors of amino acid metabolism
disease_ontology
DOID:9252
amino acid metabolic disorder
An amino acid metabolic disorder that is characterized by a mutation in the gene for the hepatic enzyme phenylalanine hydroxylase (PAH), rendering it nonfunctional.
DOID:14455
CSP2005:1849-1177
GARD:7383
ICD9CM:270.1
MESH:D010661
MESH:D017042
MTHICD9_2006:270.1
NCI:C81315
OMIM:261600
ORDO:716
UMLS_CUI:C0031485
UMLS_CUI:C0085547
F��lling's disease
PKU
maternal phenylketonuria
phenylalaninemia
disease_ontology
DOID:9281
OMIM mapping confirmed by DO. [SN].
phenylketonuria
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/inborn-errors/phenylketonuria
true
true
A communication disorder that involves the processing of linguistic information.
https://www.ncbi.nlm.nih.gov/pubmed/29241678
ICD10CM:F80.9
MESH:D007806
NCI:C97155
SNOMEDCT_US_2018_03_01:62305002
UMLS_CUI:C0023015
Language Dysfunction
dysphasia
disease_ontology
DOID:93
language disorder
true
true
true
DOID:10750
DOID:10751
DOID:9482
https://www.ncbi.nlm.nih.gov/pubmed/29720810
ICD10CM:H53.42
ICD10CM:H53.45
ICD9CM:368.42
ICD9CM:368.44
ICD9CM_2006:368.42
MESH:D012607
MTHICD9_2006:368.42
SNOMEDCT_US_2018_03_01:33970004
UMLS_CUI:C0029657
UMLS_CUI:C0152192
Blind spot area scotoma
Enlarged angioscotoma
Enlarged blind spot
Enlarged paracaecal scotoma
Generalized visual field contraction or constriction
Scotoma of blind spot area
Sector or arcuate visual field defects
disease_ontology
DOID:9335
scotoma
true
true
A disease by infectious agent that results in infection, has_material_basis_in Viruses.
DOID:1329
https://www.ncbi.nlm.nih.gov/books/NBK83677/
CSP2005:3099-8150
ICD10CM:A94
ICD10CM:B34
ICD10CM:B34.9
ICD9CM:060-066.99
ICD9CM:066.9
MESH:D001102
MESH:D014777
NCI2004_11_17:C3439
NCI:C3439
NCI:C34396
SNOMEDCT_US_2018_03_01:34014006
SNOMEDCT_US_2018_03_01:40610006
UMLS_CUI:C0003723
UMLS_CUI:C0042769
Viral Infection
Viral disease
virus infection
disease_ontology
DOID:934
viral infectious disease
true
A glucose metabolism disease characterized by chronic hyperglycaemia with disturbances of carbohydrate, fat and protein metabolism resulting from defects in insulin secretion, insulin action, or both.
ICD10CM:E08-E13
ICD9CM:250
MESH:D003920
NCI:C2985
SNOMEDCT_US_2018_03_01:73211009
UMLS_CUI:C0011849
disease_ontology
DOID:9351
diabetes mellitus
A central nervous system disease that is located_in the brain.
DOID:8510
ICD10CM:G93.40
ICD10CM:G93.9
ICD9CM:348.3
ICD9CM:348.30
ICD9CM:348.9
MESH:D001927
NCI:C26920
NCI:C96413
SNOMEDCT_US_2018_03_01:76011009
SNOMEDCT_US_2018_03_01:81308009
UMLS_CUI:C0006111
UMLS_CUI:C0085584
encephalopathy
disease_ontology
DOID:936
brain disease
A brain disease that is characterized by high pressure inside the skull, the brain tissue and cerebrospinal fluid, has_symptom headache, has_symptom vomiting, has_symptom altered mental status, has_symptom papilledema.
MESH:D019586
NCI:C84791
SNOMEDCT_US_2018_03_01:28073009
UMLS_CUI:C0151740
Raised intracranial pressure may cause decerebrate or decorticate posturing, which can be paroxysmal and mistaken for tonic-clonic or tonic seizures. Affected individuals with raised intracranial pressure are expected to show signs of encephalopathy including alteration in conscious level (not improving in the minutes after the event, as one would expect in a post-ictal state), abnormalities of tone and reflexes and pupillary abnormality.
Raised intracranial pressure
disease_ontology
DOID:9428
intracranial hypertension
true
Raised intracranial pressure may cause decerebrate or decorticate posturing, which can be paroxysmal and mistaken for tonic-clonic or tonic seizures. Affected individuals with raised intracranial pressure are expected to show signs of encephalopathy including alteration in conscious level (not improving in the minutes after the event, as one would expect in a post-ictal state), abnormalities of tone and reflexes and pupillary abnormality.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#intracranial
A lysosomal storage disease that involves the accumulation of harmful amounts of lipids (fats) in some of the body's cells and tissues.
DOID:10583
CSP2005:1849-5707
ICD10CM:E75.6
ICD9CM:272.7
ICD9CM:272.8
MESH:D008064
MTHICD9_2006:272.7
SNOMEDCT_US_2018_03_01:10741005
SNOMEDCT_US_2018_03_01:11455007
UMLS_CUI:C0023794
UMLS_CUI:C0029591
Lipoid storage diseas
Lipoidosis
inborn lipid storage disorder
lipoidosis
disease_ontology
DOID:9455
lipid storage disease
A brain disease that is characterized as an acute inflammation of the brain with flu-like symptoms.
DOID:2160
MESH:D004660
NCI:C26760
SNOMEDCT_US_2018_03_01:45170000
UMLS_CUI:C0014038
disease_ontology
DOID:9588
encephalitis
http://www.case.edu/EpSO.owl#Encephalitis
A hereditary ataxia characterized by sporadic bouts of ataxia with or without continuous muscle movement.
https://www.ncbi.nlm.nih.gov/pubmed/29791879
GARD:9851
MESH:C580065
ORDO:211062
UMLS_CUI:C1720189
Episodic ataxias are rare autosomal dominant disorders divided into two major categories: episodic ataxia type 1 (EA1) and 2 (EA2) both of which are channelopathies in which a movement disorder and epilepsy may co-exist.
Isaacs syndrome
disease_ontology
DOID:963
Xref MGI.
OMIM mapping confirmed by DO. [SN].
Updated outdated UMLS CUI.
episodic ataxia
true
true
Episodic ataxias are rare autosomal dominant disorders divided into two major categories: episodic ataxia type 1 (EA1) and 2 (EA2) both of which are channelopathies in which a movement disorder and epilepsy may co-exist.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#episodic-ataxias
A diabetes mellitus that results from the body's failure to produce insulin and has_material_basis_in autoimmune destruction of insulin-producing beta cells of the pancreas.
https://www.ncbi.nlm.nih.gov/pubmed/30600130
EFO:0001359
GARD:10268
ICD10CM:E10
KEGG:04940
MESH:D003922
NCI:C2986
OMIM:222100
SNOMEDCT_US_2018_03_01:46635009
UMLS_CUI:C0011854
Diabetes Mellitus Type 1
IDDM
insulin-dependent diabetes mellitus
type I diabetes mellitus
disease_ontology
DOID:9744
Xref MGI.
OMIM mapping confirmed by DO. [SN].
type 1 diabetes mellitus
true
true
An overnutrition that is characterized by excess body fat, traditionally defined as an elevated ratio of weight to height (specifically 30 kilograms per meter squared), has_material_basis_in a multifactorial etiology related to excess nutrition intake, decreased caloric utilization, and genetic susceptibility, and possibly medications and certain disorders of metabolism, endocrine function, and mental illness.
https://www.ncbi.nlm.nih.gov/pubmed/20161538
EFO:0001073
ICD10CM:E66.9
ICD9CM:278.00
MESH:D009765
NCI:C3283
OMIM:601665
SNOMEDCT_US_2018_03_01:5476005
UMLS_CUI:C0028754
disease_ontology
DOID:9970
OMIM mapping confirmed by DO. [SN].
obesity
true
A substance-related disorder that involves the continued use of alcohol or other drugs despite problems related to use of the substance.
NCI:C35458
UMLS_CUI:C0439857
disease_ontology
DOID:9973
substance dependence
A glucose metabolism disease that is characterized by abnormally low levels of blood glucose.
ICD10CM:E16.2
ICD9CM:251.2
MESH:D007003
NCI:C3126
SNOMEDCT_US_2018_03_01:66694000
UMLS_CUI:C0020615
Hypoglycaemia
disease_ontology
DOID:9993
hypoglycemia
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/electrolyte-abnormalities/hypoglycemia
true
Flow cytometry is a technique.
A technique is a planned process used to accomplish a specific activity or task.
PERSON: Melissa Haendel
http://en.wikipedia.org/wiki/Technique
Diagnostic Test
Protocol is added to eagle-i temporarily until a relationship between the informatio entity "protocol" and these planned processes is created. This class refers to the axtual process not the document
technique
true
An drug intervention for cancer.
A planned process used to influence one or more factors in a research study, and the independent variable in an interventional study wherein the influence is measured or evaluated.
PERSON: Melanie Wilson
PERSON: Melissa Haendel
intervention
educational intervention
An intervention which involves education, training programs, and courses in various fields and disciplines, and for training groups of persons.
PERSON: Melanie Wilson
PERSON: Melanie Wilson
https://www.ncbi.nlm.nih.gov/books/NBK100608/
MeSH ID: Q000193
educational intervention
true
psychological and behavioral intervention
Psychological or behavior intervention is a combination of program elements, strategies, or modalities designed to influence psychological or behavioral processes or outcomes.
PERSON: Matthew Brush
PERSON: Melanie Wilson
psychological and behavioral intervention
PCR.
An assay that generates data about the presence, abundance, structure, function, or activity of biological molecules, or a process that occurs at a molecular level of granularity.
PERSON: Nicole Vasilevsky
PERSON: Matthew Brush
molecular assay
A spinal tap may be performed to determine if a patient has a neurological disorder.
A technique used to collect cerebrospinal fluid (CSF) from an organism, which involves inserting a needle between the third and fourth lumbar vertebrae in the back and extracting a sample of fluid.
PERSON: Nicole Vasilevsky
CSF collection
Cerebrospinal fluid collection
Spinal tap
http://www.weissandnewberrymds.com/services.htm
https://www.ncbi.nlm.nih.gov/pubmed/26468872
Lumbar Puncture
cerebro-spinal tap
true
A DNA sequencing technique that became commercially available in 2004 and is used by specific commercial platforms that embody a complex interplay of enzymology, chemistry, high-resolution optics, hardware, and software engineering. These instruments allow highly streamlined sample preparation steps prior to DNA sequencing, which provides a significant time savings and a minimal requirement for associated equipment in comparison to the highly automated, multistep pipelines necessary for clone-based high-throughput sequencing. Each technology amplifies single strands of a fragment library and perform sequencing reactions on the amplified strands. The fragment libraries are obtained by annealing platform-specific linkers to blunt-ended fragments generated directly from a genome or DNA source of interest. Because the presence of adapter sequences means that the molecules then can be selectively amplified by PCR, and no bacterial cloning step is required to amplify the genomic fragment in a bacterial intermediate as is done in traditional sequencing approaches.
PERSON: Nicole Vasilevsky
Genome sequencing
High throughput DNA sequencing
High throughput nucleotide sequencing
NGS
Next gen
Next gen sequencing
Next generation sequencing of target genes
Nucleotide sequencing, high-throughput
Second generation sequencing
Sequencing, high-throughput nucleotide
Mardis (2008) Annu. Rev. Genomics Hum. Genet. 9:387-402
https://www.ncbi.nlm.nih.gov/pubmed/30661434
next generation DNA sequencing
true
Used to study brain function and activity.
A physiological assay that uses nuclear magnetic resonance of protons to produce proton density images.
PERSON: Nicole Vasilevsky
MRI
http://wordnetweb.princeton.edu/perl/webwn?s=mri
magnetic resonance imaging
true
true
Used to study brain function and activity.
A physiological assay that complements magnetic resonance imaging (MRI) as a non-invasive means for the characterization of tissue. While MRI uses the signal from hydrogen protons to form anatomic images, proton MRS uses this information to determine the concentration of brain metabolites such as N-acetyl aspartate (NAA), choline (Cho), creatine (Cr) and lactate in the tissue examined.
PERSON: Nicole Vasilevsky
MRS
http://www.ncbi.nlm.nih.gov/pubmed/16148633
https://www.ncbi.nlm.nih.gov/pubmed/27430454
magnetic resonance spectroscopy
true
true
Phenotype characterization of a transgenic mouse.
An assay that generates data about the physical characteristics, physological functions, or behavior of organisms or viruses.
PERSON: Nicole Vasilevsky
PERSON: Matthew Brush
organismal assay
PCR.
A molecular assay that generates data about the presence, abundance, structure, function, or activity of nucleic acids.
PERSON: Nicole Vasilevsky
PERSON: Matthew Brush
nucleic acid assay
Electrocardiogram.
An organismal assay designed to capture information pertaining to the the organic processes and phenomena of an organism or any of its parts or of a particular bodily process.
PERSON: Nicole Vasilevsky
http://www.merriam-webster.com/dictionary/physiology
physiological assay
MRI.
A technique used to create a representation or reproduction of an object's outward form; especially a visual representation (i.e., the formation of an image).
PERSON: Nicole Vasilevsky
http://en.wikipedia.org/wiki/Imaging
imaging technique
A physiological assay that utilizes systematic administration of defined procedures to measure specific psychological functions known to be linked to particular brain structures or pathways in humans.
PERSON: Nicole Vasilevsky
http://en.wikipedia.org/wiki/Neuropsychological_test
https://www.ncbi.nlm.nih.gov/pubmed/27789166
neuropsychological evaluation
neuropsychological testing
true
An imaging technique, in which a gamma camera rotates around the patient and takes pictures from many angles, and a tomographic (cross-sectional) image is generated.
PERSON: Nicole Vasilevsky
SPECT
http://www.medterms.com/script/main/art.asp?articlekey=18450
https://www.ncbi.nlm.nih.gov/pubmed/21490734
single photon emission computed tomography
true
true
true
Karyotyping of patient to determine if they carry a genetic disease.
A molecular assay used to determine the number and appearance of chromosomes in the nucleus of a eukaryotic cell.
PERSON: Nicole Vasilevsky
Chromosomal analysis
http://en.wikipedia.org/wiki/Karyotype
https://www.ncbi.nlm.nih.gov/pubmed/29722352
karyotyping
true
A physiological assay used in the study of sleep and as a diagnostic tool in sleep medicine.
PERSON: Nicole Vasilevsky
Sleep study
http://en.wikipedia.org/wiki/Polysomnography
polysomnography
true
An imaging technique that produces a three-dimensional image or picture of functional processes in the body. The system detects pairs of gamma rays emitted indirectly by a positron-emitting radionuclide (tracer), which is introduced into the body on a biologically active molecule. Three-dimensional images of tracer concentration within the body are then constructed by computer analysis.
PERSON: Nicole Vasilevsky
PET
http://en.wikipedia.org/wiki/Positron_emission_tomography
https://www.ncbi.nlm.nih.gov/pubmed/14537108
positron emission tomography
true
true
true
A genotyping assay that determines the complete DNA sequence of a cell or organism's genome at a single time.
PERSON:Matthew Brush
complete genome sequencing
entire genome sequencing
full genome sequencing
whole genome sequence analysis
http://en.wikipedia.org/wiki/Whole_genome_sequencing
https://www.ncbi.nlm.nih.gov/pubmed/29722352
Includes chromosomal and mitochondiral genomes, and chloroplast genomes in plants.
whole genome sequencing
true
A magnetic resonance imaging technique that measures brain activity by detecting associated changes in blood flow. The procedure is similar to MRI but uses the change in magnetization between oxygen-rich and oxygen-poor blood as its basic measure.
PERSON:Tenille Johnson
fMRI
functional MRI
http://en.wikipedia.org/wiki/Functional_magnetic_resonance_imaging
functional magnetic resonance imaging
true
a laboratory test that has a blood specimen as specified input
John Judkins
Blood test
EuPathDB
blood test
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
https://www.ncbi.nlm.nih.gov/pubmed/22554135
fma
FMA:242176
Broca's area
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
true
true
https://www.ncbi.nlm.nih.gov/pubmed/17855377
Supracalacrine
fma
FMA:71055
Supracalcarine cortex (SCAL)
true
true
A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.
organ system process
biological_process
GO:0003008
system process
A organ system process carried out at the level of a muscle. Muscle tissue is composed of contractile cells or fibers.
biological_process
muscle physiological process
GO:0003012
muscle system process
A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis.
MIPS_funcat:36.25.09
Wikipedia:Muscle_contraction
biological_process
GO:0006936
muscle contraction
true
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0023033
MIPS_funcat:30
Wikipedia:Signal_transduction
signaling cascade
signalling cascade
biological_process
signaling pathway
signalling pathway
GO:0007165
Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not.
signal transduction
A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane.
GO:0038042
https://www.ncbi.nlm.nih.gov/pubmed/26721354
MIPS_funcat:30.01.05.05
MIPS_funcat:30.05.02.24
G protein coupled receptor protein signaling pathway
G protein coupled receptor protein signalling pathway
G-protein coupled receptor protein signal transduction
G-protein coupled receptor protein signaling pathway
G-protein coupled receptor signalling pathway
G-protein-coupled receptor protein signalling pathway
GPCR signaling pathway
GPCR signalling pathway
G-protein coupled receptor signaling pathway via GPCR dimer
dimeric G-protein coupled receptor signaling pathway
dimeric G-protein coupled receptor signalling pathway
biological_process
GO:0007186
G protein-coupled receptor signaling pathway
true
The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.
janelomax
2012-09-20T14:06:08Z
GO:0023032
GO:0044708
GO:0044709
Wikipedia:Behavior
behavioral response to stimulus
behaviour
behavioural response to stimulus
biological_process
single-organism behavior
GO:0007610
1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.
2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis).
behavior
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
https://www.ncbi.nlm.nih.gov/pubmed/28089585
Wikipedia:Memory
biological_process
GO:0007613
memory
true
true
biological_process
A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
janelomax
2012-09-19T15:05:24Z
GO:0000004
GO:0007582
GO:0044699
Wikipedia:Biological_process
biological process
physiological process
biological_process
single organism process
single-organism process
GO:0008150
Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this.
biological_process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
janelomax
2012-12-11T16:56:55Z
GO:0008151
GO:0044763
GO:0050875
cell physiology
cellular physiological process
cell growth and/or maintenance
biological_process
single-organism cellular process
GO:0009987
cellular process
The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
GO:0007222
https://www.ncbi.nlm.nih.gov/pubmed/18976727
MIPS_funcat:30.05.02.20
Wg signaling pathway
Wg signalling pathway
Wingless signaling pathway
Wingless signalling pathway
Wnt receptor signaling pathway
Wnt receptor signalling pathway
frizzled signaling pathway
frizzled signalling pathway
biological_process
Wnt-activated signaling pathway
GO:0016055
Wnt signaling pathway
true
A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
janelomax
2012-09-19T15:56:06Z
GO:0044702
biological_process
single organism reproductive process
GO:0022414
reproductive process
A physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.
biological_process
GO:0022600
digestive system process
The progression of physiological phases, occurring in the endometrium during the menstrual cycle that recur at regular intervals during the reproductive years. The menstrual cycle is an ovulation cycle where the endometrium is shed if pregnancy does not occur.
biological_process
GO:0022601
menstrual cycle phase
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
janelomax
2012-09-19T16:07:47Z
GO:0044707
GO:0050874
organismal physiological process
biological_process
single-multicellular organism process
GO:0032501
multicellular organismal process
The cyclic, physiologic discharge through the vagina of blood and endometrial tissues from the nonpregnant uterus.
Wikipedia:Menstruation
biological_process
GO:0042703
menstruation
true
The hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow.
https://www.ncbi.nlm.nih.gov/books/NBK2605/
Wikipedia:Erection#Penile_erection
biological_process
GO:0043084
penile erection
true
The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
organismal reproductive process
reproductive process in a multicellular organism
biological_process
GO:0048609
multicellular organismal reproductive process
The behavior in which an organism sheds tears, often accompanied by non-verbal vocalizations and in response to external or internal stimuli.
cry
crying behavior
true
true
The process of biting and mashing food with the teeth prior to swallowing.
midori
2010-02-10T11:19:48Z
https://www.ncbi.nlm.nih.gov/pubmed/2782045
chewing
biological_process
GO:0071626
mastication
true
true
A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway starts with reception of an intracellular signal (e.g. DNA damage, endoplasmic reticulum stress, oxidative stress etc.), and ends when the execution phase of apoptosis is triggered. The intrinsic apoptotic signaling pathway is crucially regulated by permeabilization of the mitochondrial outer membrane (MOMP).
paola
2011-11-23T09:40:50Z
GO:0008629
https://www.ncbi.nlm.nih.gov/pubmed/17371290
intrinsic apoptotic pathway
intrinsic apoptotic signalling pathway
mitochondrial-mediated apoptotic pathway
intrinsic apoptosis
biological_process
induction of apoptosis by intracellular signals
GO:0097193
The signals that start intrinsic apoptosis may come from extracellular sources (e.g. oxidative stress, UV exposure), but the reception of the signal and thus the signaling pathway start inside the cell (as a result of DNA damage, redox imbalance, etc.). Examples are ZPR9 (ZNF622) and ASK1 (MAP3K5) (UniProt symbols Q969S3 and Q99683) in PMID:21771788. A diagram of the intrinsic apoptotic pathway including examples of molecular players can be found in Figure 2 in PMID:21760595.
intrinsic apoptotic signaling pathway
true
Dysfunction of the urinary bladder.
HP:0004424
HP:0008731
UMLS:C3806583
Poor bladder function
human_phenotype
HP:0000009
Functional abnormality of the bladder
An abnormality of the urinary bladder.
UMLS:C0149632
human_phenotype
HP:0000014
Abnormality of the bladder
An abnormality of the urinary system.
UMLS:C4021821
Urinary tract abnormalities
Urinary tract abnormality
Urinary tract anomalies
human_phenotype
HP:0000079
Abnormality of the urinary system
A phenotypic abnormality.
UMLS:C4021819
Organ abnormality
human_phenotype
HP:0000118
This is the root of the phenotypic abnormality subontology of the HPO.
Phenotypic abnormality
The presence of any abnormality of the genitourinary system.
HP:0008658
HP:0008688
HP:0008704
HP:0008713
MSH:D014564
SNOMEDCT_US:287085006
SNOMEDCT_US:42030000
UMLS:C0042063
UMLS:C0080276
UMLS:C4020895
Abnormality of the GU system
Genitourinary abnormality
Genitourinary tract anomalies
Genitourinary tract malformation
Urogenital abnormalities
Urogenital anomalies
human_phenotype
Genitourinary disease
Genitourinary dysplasia
HP:0000119
Abnormality of the genitourinary system
An abnormality of head and neck.
UMLS:C4021817
Abnormality of head or neck
Head and neck abnormality
human_phenotype
HP:0000152
Abnormality of head or neck
An abnormality of the mouth.
MSH:D009056
SNOMEDCT_US:128334002
UMLS:C0026633
Abnormal mouth
Abnormality of the mouth
human_phenotype
HP:0000153
Abnormality of the mouth
An abnormality of the head.
UMLS:C4021812
Abnormal head
Abnormality of the head
Head abnormality
human_phenotype
HP:0000234
Abnormality of the head
An abnormality of the face.
Abnormality of the countenance
Abnormality of the physiognomy
Abnormality of the visage
Disorder of face
SNOMEDCT_US:118930001
SNOMEDCT_US:32003007
SNOMEDCT_US:398206004
SNOMEDCT_US:398302004
UMLS:C0266617
UMLS:C1290857
UMLS:C4025871
Abnormal face
Abnormality of the face
Facial abnormality
Disorder of the face
human_phenotype
Anomaly of face
Anomaly of the face
Facial anomaly
HP:0000271
Abnormality of the face
An anomaly of a muscle that is innervated by the facial nerve (the seventh cranial nerve).
UMLS:C4025865
Abnormality of facial muscles
Facial muscle issue
human_phenotype
HP:0000301
Facial muscles control facial expression and are innervated by the seventh cranial nerve. Facial muscles around the eye are responsible for eye blink and eyelid closure.
Abnormality of facial musculature
HP:0000284
UMLS:C4025863
Abnormality of the eye region
Abnormality of the region around the eyes
Anomaly of the orbital region of the face
Deformity of the orbital region of the face
Malformation of the orbital region of the face
human_phenotype
HP:0000315
Abnormality of the orbital region
Facial myokymia is a fine fibrillary activity of one or more muscles innervated by the facial nerve (the seventh cranial nerve).
HP:0004651
https://www.ncbi.nlm.nih.gov/pubmed/29961525
MSH:D005155
SNOMEDCT_US:1070000
UMLS:C0270871
Involuntary facial contraction
Involuntary facial quivering
human_phenotype
HP:0000317
Facial myokymia may be caused by a plaque of multiple sclerosis or have other causes.
Facial myokymia
true
true
An abnormality of the sensory perception of sound.
UMLS:C4025860
Abnormal hearing
Hearing abnormality
human_phenotype
HP:0000364
According to the World Health Organization, deafness refers to the complete loss of hearing ability in one or two ears. Hearing impairment refers to both complete and partial loss of the ability to hear.
Hearing abnormality
A decreased magnitude of the sensory perception of sound.
HP:0000404
HP:0001728
HP:0001729
HP:0001754
HP:0008560
HP:0008563
Fyler:4868
MSH:D003638
MSH:D034381
SNOMEDCT_US:103276001
SNOMEDCT_US:15188001
SNOMEDCT_US:343087000
SNOMEDCT_US:95828007
UMLS:C0011053
UMLS:C0018772
UMLS:C0339789
UMLS:C1384666
Congenital deafness
Congenital hearing loss
Deafness
Hearing defect
Hearing impairment
human_phenotype
Hearing loss
Hypoacusis
HP:0000365
Hearing loss can be categorized by which part of the auditory system is damaged, as conductive hearing loss, sensorineural hearing loss, and mixed hearing loss. Another axis of classification uses the degree of hearing impairment. The degree of hearing loss is computed by using a three frequency average taken at 500 Hz, 1,000 Hz and 2,000 Hz. The average of these three frequencies is called the Pure Tone Average (PTA). 0-20 dB is considered normal, 21-40 dB mild loss, 41-60 dB moderate loss, 61-70 dB moderately severe loss,71-90 dB severe loss, and greater than 90 dB profound loss. Note that the word deafness is occasionally used to describe partial hearing loss. The World Health Organization uses the word deafness to refer to complete loss of the ability to hear, and hearing impairment to refer to any degree of reduced hearing.
Hearing impairment
https://rarediseases.org/rare-diseases/progressive-myoclonus-epilepsy/
true
Any abnormality of the eye, including location, spacing, and intraocular abnormalities.
MSH:D005124
MSH:D005128
SNOMEDCT_US:19416009
SNOMEDCT_US:371405004
SNOMEDCT_US:371409005
UMLS:C0015393
UMLS:C0015397
Abnormal eye
Abnormality of the eye
human_phenotype
Eye disease
HP:0000478
Abnormality of the eye
An abnormality in voluntary or involuntary eye movements or their control.
HP:0006860
https://www.ncbi.nlm.nih.gov/pubmed/12365699
SNOMEDCT_US:103252009
UMLS:C0497202
Abnormal extraocular movement
Abnormal extraocular movements
Abnormal eye motility
Abnormal eye movement
Abnormal eye movements
Abnormal motility of the globe of the eye
Abnormal movement of the globe of the eye
Abnormal ocular movements
Abnormality of eye movement
Eye movement abnormalities
Eye movement issue
Ocular movement abnormalities
Oculomotor abnormalities
human_phenotype
HP:0000496
Abnormality of eye movement
true
Abnormality of eyesight (visual perception).
UMLS:C4025846
Abnormality of sight
Abnormality of vision
Vision issue
human_phenotype
HP:0000504
Abnormality of vision
Visual impairment (or vision impairment) is vision loss (of a person) to such a degree as to qualify as an additional support need through a significant limitation of visual capability resulting from either disease, trauma, or congenital or degenerative conditions that cannot be corrected by conventional means, such as refractive correction, medication, or surgery.
HP:0000516
HP:0000566
HP:0007758
HP:0007860
HP:0007983
MSH:D014786
MSH:D015354
SNOMEDCT_US:246635007
SNOMEDCT_US:397540003
SNOMEDCT_US:7973008
UMLS:C0042798
UMLS:C3665347
Impaired vision
Loss of eyesight
Poor vision
Visual impairment
human_phenotype
HP:0000505
Visual impairment
Any deviation from the normal motor coordination of the eyes that allows for bilateral fixation on a single object.
https://www.ncbi.nlm.nih.gov/pubmed/?term=%27Abnormal+conjugate+eye+movement%27+epilepsy
UMLS:C1845274
Disconjugate eye movements
human_phenotype
HP:0000549
Abnormal conjugate eye movement
true
true
An abnormality of eye movement characterized by impairment of fast (saccadic) eye movements.
HP:0000604
UMLS:C1842584
UMLS:C4025841
Abnormality of saccadic eye movements
human_phenotype
Impaired saccades
HP:0000570
Fast (saccadic) eye movements comprise voluntary or involuntary refixation movements, the fast phase of vestibular nystagmus, optokinetic nystagmus, and microsaccades.
Abnormal saccadic eye movements
true
Saccadic undershoot, i.e., a saccadic eye movement that has less than the magnitude that would be required to gain fixation of the object.
SNOMEDCT_US:246768008
UMLS:C0423082
human_phenotype
HP:0000571
Hypometric saccades
An abnormality of the ear.
SNOMEDCT_US:275259005
UMLS:C0266589
Abnormality of the ear
Ear anomaly
human_phenotype
HP:0000598
Either a morphological abnormality or hearing deficit. This should be split more cleanly in the future.
Abnormality of the ear
An abnormality of the nervous system.
HP:0001333
HP:0006987
Brain and/or spinal cord issue
MSH:D009421
SNOMEDCT_US:88425004
UMLS:C0497552
Abnormality of the nervous system
Neurologic abnormalities
Neurological abnormality
human_phenotype
HP:0000707
The nervous system comprises the neuraxis (brain, spinal cord, and ventricles), the autonomic nervous system, the enteric nervous system, and the peripheral nervous system.
Abnormality of the nervous system
An abnormality of mental functioning including various affective, behavioural, cognitive and perceptual abnormalities.
HP:0000715
HP:0002368
HP:0002456
MSH:D000066553
MSH:D001526
SNOMEDCT_US:25786006
SNOMEDCT_US:277843001
UMLS:C0004941
UMLS:C0233514
Behavioral abnormality
Behavioral changes
Behavioral disorders
Behavioral disturbances
Behavioral problems
Behavioral/psychiatric abnormalities
Behavioural abnormality
Behavioural/Psychiatric abnormality
Psychiatric disorders
Psychiatric disturbances
human_phenotype
Behavioral symptoms
HP:0000708
Behavioral abnormality
Unstable emotional experiences and frequent mood changes; emotions that are easily aroused, intense, and/or out of proportion to events and circumstances.
HP:0008766
https://www.ncbi.nlm.nih.gov/pubmed/8441366
SNOMEDCT_US:18963009
UMLS:C0085633
Emotional instability
human_phenotype
HP:0000712
Emotional lability
true
Frequent feelings of being down, miserable, and/or hopeless; difficulty recovering from such moods; pessimism about the future; pervasive shame; feeling of inferior self-worth; thoughts of suicide and suicidal behavior.
https://www.ncbi.nlm.nih.gov/pubmed/17260039
https://www.ncbi.nlm.nih.gov/pubmed/20301709
https://www.ncbi.nlm.nih.gov/pubmed/28139515
MSH:D003866
SNOMEDCT_US:21061000119107
SNOMEDCT_US:35489007
SNOMEDCT_US:78667006
UMLS:C0011581
Depression
human_phenotype
Depressive disorder
HP:0000716
Depressivity
true
true
A stereotypy is a repetitive, simple movement that can be voluntarily suppressed. Stereotypies are typically simple back-and-forth movements such as waving of flapping the hands or arms, and they do not involve complex sequences or movement fragments. Movement is often but not always rhythmic and may involve fingers, wrists, or more proximal portions of the upper extremity. The lower extremity is not typically involved. Stereotypies are more commonly bilateral than unilateral.
HP:0008758
HP:0008759
https://www.ncbi.nlm.nih.gov/pubmed/29791879
MSH:D013239
MSH:D019956
SNOMEDCT_US:5507002
SNOMEDCT_US:84328007
UMLS:C0038271
UMLS:C0038273
Stereotypies (or mannerisms) are repetitive movements, postures, or utterances that may be simple (such as body rocking, head banging) or complex (such as finger movements or wrist flexion/extension). They may be primary (seen in otherwise normal individuals) or secondary (associated with autism, intellectual impairment and other disorders). Stereotypies can be distinguished from epileptic automatisms by the characteristic movements (a video of events can be helpful to aid diagnosis).
Repetitive movements
Repetitive or self-injurious behavior
Stereotyped behavior
Stereotyped, repetitive behaviour
Stereotypic behavior
Stereotypic behaviors
Stereotypical motor behaviors
Sterotyped behavior
human_phenotype
Stereotyped behaviors
HP:0000733
An abnormality of behavior characterized by one or more stereotyped and restricted patterns of behavior such as inflexible adherence to specific, nonfunctional routines or rituals, stereotyped and repetitive motor mannerisms (e.g., hand or finger flapping or twisting, or complex whole-body movements), or persistent preoccupation with parts of objects. The behaviour does not serve an observable goal. In general the movements are not aimed at the environment, but at the person itself. Stereotypical behaviour is seen especially in children with sensory, intellectual and/or cognitive handicaps.
Stereotypy
true
true
Stereotypies (or mannerisms) are repetitive movements, postures, or utterances that may be simple (such as body rocking, head banging) or complex (such as finger movements or wrist flexion/extension). They may be primary (seen in otherwise normal individuals) or secondary (associated with autism, intellectual impairment and other disorders). Stereotypies can be distinguished from epileptic automatisms by the characteristic movements (a video of events can be helpful to aid diagnosis).
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#stereotypies
Lack of the ability to control the urinary bladder leading to involuntary urination at an age where control of the bladder should already be possible.
MSH:D004775
SNOMEDCT_US:8009008
UMLS:C0014394
human_phenotype
HP:0000805
Enuresis
An abnormality of the endocrine system.
MSH:D004700
SNOMEDCT_US:362969004
UMLS:C0014130
UMLS:C4025823
human_phenotype
Endocrine system disease
HP:0000818
The endocrine system is composed of glands that secrete hormones directly into the bloodstream and includes the following glands: thyroid, parathyroids, adrenals, pancreas, gonads (testicles and ovaries), and pituitary. Many other organs, such as the kidney, liver, and heart, have secondary endocrine functions.
Abnormality of the endocrine system
The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys.
https://www.ncbi.nlm.nih.gov/pubmed/13365719
https://www.ncbi.nlm.nih.gov/pubmed/30838190
MSH:D011629
SNOMEDCT_US:123527003
SNOMEDCT_US:400179000
UMLS:C0034013
Early onset of puberty
Early puberty
human_phenotype
HP:0000826
Precocious puberty
http://www.case.edu/EpSO.owl#PrecociousPuberty
true
true
An abnormality of the skeletal system.
UMLS:C4021790
Abnormality of the skeletal system
Skeletal abnormalities
Skeletal anomalies
human_phenotype
HP:0000924
Abnormality of the skeletal system
An abnormality of the skin.
HP:0001478
HP:0001479
HP:0005591
HP:0006736
HP:0007415
HP:0007580
MSH:D012868
MSH:D012871
SNOMEDCT_US:199879009
SNOMEDCT_US:95320005
UMLS:C0037268
UMLS:C0037274
Abnormality of the skin
dermatopathy
dermopathy
human_phenotype
Skin abnormality
HP:0000951
Abnormality of the skin
Redness of the skin of the face, caused by hyperemia of the capillaries in the lower layers of the skin.
HP:0001068
MSH:D001821
MSH:D012393
SNOMEDCT_US:20255002
SNOMEDCT_US:271811009
SNOMEDCT_US:398909004
UMLS:C0005874
UMLS:C0035854
UMLS:C0239488
UMLS:C4020880
Blushed cheeks
Blushing
Red face
Red in the face
Rosacea
human_phenotype
Ruddy face
HP:0001041
Facial erythema
true
https://www.ncbi.nlm.nih.gov/pubmed/29172092
SNOMEDCT_US:12184005
UMLS:C3887875
Partial loss of field of vision
Visual field defects
human_phenotype
HP:0001123
Visual field defect
true
Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a complete loss of strength, whereas hemiparesis refers to an incomplete loss of strength.
https://www.ncbi.nlm.nih.gov/pubmed/31603835
MSH:D010291
SNOMEDCT_US:127377003
SNOMEDCT_US:20022000
UMLS:C0018989
Weakness of one side of body
human_phenotype
HP:0001269
Hemiparesis
true
true
A condition in which there is increased muscle tone so that arms or legs, for example, are stiff and difficult to move.
HP:0002388
https://www.ncbi.nlm.nih.gov/pubmed/27188686
MSH:D009122
SNOMEDCT_US:41581000
SNOMEDCT_US:56731001
UMLS:C0026826
Hypertonicity
Increased muscle tone
Spasticity and rigidity of muscles
human_phenotype
Muscle hypertonia
HP:0001276
Spasticity is a term that is often used interchangeably with hypertonia. Spasticity, however, is a particular type of hypertonia in which the muscles' spasms are increased by movement. In this type, patients usually have exaggerated reflex responses.
Hypertonia
true
true
Syncope refers to a generalized weakness of muscles with loss of postural tone, inability to stand upright, and loss of consciousness. Once the patient is in a horizontal position, blood flow to the brain is no longer hindered by gravitation and consciousness is regained. Unconsciousness usually lasts for seconds to minutes. Headache and drowsiness (which usually follow seizures) do not follow a syncopal attack. Syncope results from a sudden impairment of brain metabolism usually due to a reduction in cerebral blood flow.
peter
2008-02-25T10:37:00Z
MSH:D013575
SNOMEDCT_US:271594007
SNOMEDCT_US:272030005
SNOMEDCT_US:309585006
UMLS:C0039070
Fainting spell
human_phenotype
Syncope and anoxic seizures
HP:0001279
Syncope
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#syncope
true
An abnormality of the function of the electrical signals with which nerve cells communicate with each other or with muscles as measured by electrophysiological investigations.
HP:0002531
HP:0003129
UMLS:C4021781
Neurophysiologic abnormalities
Neurophysiologic abnormality
human_phenotype
Electrophysiological Data
HP:0001311
Abnormal nervous system electrophysiology
http://www.case.edu/EpSO.owl#ElectrophysiologicalData
Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements.
HP:0002535
HP:0007087
Jerking
MSH:D009207
SNOMEDCT_US:127324008
SNOMEDCT_US:17450006
UMLS:C0027066
UMLS:C1854302
Myoclonic jerks
myoclonic contraction
myoclonic jerk
human_phenotype
Involuntary jerking movements
HP:0001336
Myoclonus may be synchronous (several muscle contracting simultaneously), spreading (several muscles contracting in sequence), or asynchronous (several muscles contracting with varying and unpredictable relative timing). Myoclonus is characterized by sudden unidirectional movement due to muscle contraction (positive myoclonus) or due to sudden brief muscle relaxation (negative myoclonus).
Myoclonus
true
Hemorrhage into the parenchyma of the brain.
HP:0002137
https://www.ncbi.nlm.nih.gov/pubmed/2761703
MSH:D002543
MSH:D020300
SNOMEDCT_US:230706003
SNOMEDCT_US:274100004
UMLS:C0553692
UMLS:C2937358
Bleeding in brain
Cerebral haemorrhage
Intracerebral hemorrhage
human_phenotype
Hemorrhagic stroke
HP:0001342
A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself.
Cerebral hemorrhage
http://www.case.edu/EpSO.owl#CerebralHemorrhage
true
A flexion contracture is a bent (flexed) joint that cannot be straightened actively or passively. It is thus a chronic loss of joint motion due to structural changes in muscle, tendons, ligaments, or skin that prevents normal movement of joints.
HP:0001372
HP:0001381
HP:0005053
HP:0005189
HP:0005660
MSH:D003286
SNOMEDCT_US:203598005
SNOMEDCT_US:385522000
SNOMEDCT_US:55033002
SNOMEDCT_US:57048009
SNOMEDCT_US:7890003
SNOMEDCT_US:88565003
UMLS:C0009917
UMLS:C0009918
UMLS:C0333068
UMLS:C1850530
Contracture
Flexed joint that cannot be straightened
Flexion contractures
Flexion contractures of joints
Joint contracture
Joint contractures
human_phenotype
Contractures
HP:0001371
Flexion contracture
true
HP:0008904
UMLS:C0262361
Abnormal growth
Growth abnormality
Growth issue
human_phenotype
HP:0001507
Growth abnormality
Smaller than normal size according to sex and gestational age related norms, defined as a weight below the 10th percentile for the gestational age.
HP:0001422
HP:0008849
HP:0008919
HP:0008927
MSH:D007230
SNOMEDCT_US:267258002
SNOMEDCT_US:276610007
UMLS:C0024032
UMLS:C0235991
Birth weight less than 10th percentile
Low birth weight
Small for gestational age
human_phenotype
HP:0001518
Small for gestational age
https://www.epilepsy.com/learn/about-epilepsy-basics/what-are-risk-factors
true
An abnormality of the integument, which consists of the skin and the superficial fascia.
UMLS:C4025761
human_phenotype
HP:0001574
Abnormality of skin, hair, or nails.
Abnormality of the integument
Any abnormality of the cardiovascular system.
MSH:D002318
MSH:D018376
SNOMEDCT_US:49601007
UMLS:C0007222
UMLS:C0243050
Abnormality of the cardiovascular system
Cardiovascular abnormality
human_phenotype
Cardiovascular disease
HP:0001626
The cardiovascular system consists of the heart, vasculature, and the lymphatic system.
Abnormality of the cardiovascular system
An abnormality of the hematopoietic system.
HP:0003135
MSH:D006402
SNOMEDCT_US:191124002
SNOMEDCT_US:34093004
UMLS:C0018939
UMLS:C0850715
UMLS:C4020864
Abnormality of blood and blood-forming tissues
Abnormality of the hematopoietic system
Hematological abnormality
human_phenotype
Abnormality of the haematopoietic system
Hematologic disease
HP:0001871
The hematopoietic system comprises the organs that are involved in the production of blood, primarily the bone marrow, spleen, tonsils, and lymph nodes.
Abnormality of blood and blood-forming tissues
An abnormal susceptibility to bleeding, often referred to as a bleeding diathesis. A bleeding diathesis may be related to vascular, platelet and coagulation defects.
HP:0004830
HP:0004834
HP:0004849
HP:0004862
HP:0004865
HP:0008183
SNOMEDCT_US:248250000
SNOMEDCT_US:64779008
UMLS:C1458140
Bleeding diathesis
Bleeding tendency
Hemorrhagic diathesis
human_phenotype
HP:0001892
This term is kept for historical reasons. If possible, a more exact description of the phenotype (i.e., whether there is a vascular, platelet and coagulation defect) should be attempted.
Abnormal bleeding
HP:0002146
HP:0004355
HP:0004367
UMLS:C4021768
Laboratory abnormality
Metabolism abnormality
human_phenotype
HP:0001939
Abnormality of metabolism/homeostasis
Venous or arterial thrombosis (formation of blood clots) of spontaneous nature and which cannot be fully explained by acquired risk (e.g. atherosclerosis).
UMLS:C4025731
Abnormal blood clot
Abnormal blood clotting
human_phenotype
HP:0001977
Abnormal thrombosis
An abnormal morphology (form) of the face or its components.
HP:0002004
HP:0002260
HP:0004643
HP:0004649
HP:0004652
HP:0004655
HP:0004675
HP:0005124
Deformity of face
Malformation of face
https://www.ncbi.nlm.nih.gov/pubmed/26864574
SNOMEDCT_US:248200007
SNOMEDCT_US:32003007
SNOMEDCT_US:398206004
SNOMEDCT_US:398302004
UMLS:C0266617
UMLS:C0424503
UMLS:C1385263
UMLS:C4072832
UMLS:C4072833
Abnormal facial shape
Abnormal morphology of the face
Distinctive facies
Dysmorphic facial features
Dysmorphic facies
Facial dysmorphism
Unusual facial appearance
Unusual facies
human_phenotype
Distortion of face
Funny looking face
HP:0001999
This term now covers many of the historical inexact descriptions such as Bird-like facies that probably should be avoided in modern genetics. This portion of the Ontology should be revised.
Abnormal facial shape
https://www.mendelian.co/symptoms/abnormal-facial-shape-and-polymicrogyria
true
true
A structural abnormality of the central nervous system.
HP:0002405
HP:0002413
HP:0002481
HP:0007319
MSH:D002493
SNOMEDCT_US:23853001
UMLS:C0007682
UMLS:C4021765
Abnormality of the central nervous system
Morphological abnormality of the CNS
human_phenotype
Central nervous system disease
HP:0002011
Morphological abnormality of the central nervous system
Forceful ejection of the contents of the stomach through the mouth by means of a series of involuntary spasmic contractions.
https://www.ncbi.nlm.nih.gov/pubmed/30118929
MEDDRA:10047700
MSH:D014839
SNOMEDCT_US:249497008
SNOMEDCT_US:300359004
SNOMEDCT_US:422400008
UMLS:C0042963
Emesis
Throwing up
Vomiting
human_phenotype
HP:0002013
Vomiting
true
true
SNOMEDCT_US:16932000
UMLS:C0027498
Nausea and vomiting
human_phenotype
HP:0002017
Nausea and vomiting
Generalized tonic-clonic seizures are generalized seizures with bilateral symmetrical tonic contraction then bilateral clonic contractions of somatic muscles usually associated with autonomic phenomena.
HP:0001306
HP:0002407
HP:0007252
MSH:D012640
SNOMEDCT_US:54200006
UMLS:C0494475
Generalized tonic-clonic seizures are bilateral and symmetric generalized motor seizures, that occur in an individual with loss of consciousness. The tonic-clonic seizure consists of a tonic (bilateral increased tone, lasting seconds to minutes) and then a clonic (bilateral sustained rhythmic jerking) phase, typically in this order, however variations such as clonic-tonic-clonic and myoclonic-tonic-clonic can also occur.
Generalised tonic-clonic seizures
Generalized clonic-tonic seizures
Generalized tonic clonic seizures
Grand mal seizures
Seizures, generalized tonic-clonic
Seizures, generalized, tonic-clonic
Seizures, tonic-clonic
Tonic-clonic convulsion
Tonic-clonic convulsions
human_phenotype
HP:0002069
In a generalized tonic-clonic seizure, the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure.
Generalized tonic-clonic seizures
true
Generalized tonic-clonic seizures are bilateral and symmetric generalized motor seizures, that occur in an individual with loss of consciousness. The tonic-clonic seizure consists of a tonic (bilateral increased tone, lasting seconds to minutes) and then a clonic (bilateral sustained rhythmic jerking) phase, typically in this order, however variations such as clonic-tonic-clonic and myoclonic-tonic-clonic can also occur.
https://www.epilepsydiagnosis.org/seizure/tonic-clonic-variants-overview.html
An abnormality of the respiratory system, which include the airways, lungs, and the respiratory muscles.
UMLS:C4018871
Respiratory abnormality
human_phenotype
HP:0002086
Abnormality of the respiratory system
Seizures with sudden, brief (< 100 msec) involuntary single or multiple contraction(s) of muscles(s) or muscle groups of variable topography (axial, proximal limb, distal).
HP:0006869
HP:0006902
HP:0007075
HP:0007202
HP:0007284
HP:0007294
Myoclonic seizures
MSH:D004831
MSH:D020191
SNOMEDCT_US:192992007
SNOMEDCT_US:267581004
SNOMEDCT_US:37356005
UMLS:C0014550
UMLS:C0751778
UMLS:C4021759
A myoclonic seizure is a single or series of jerks (brief muscle contractions). Each jerk is typically milliseconds in duration. Myoclonic status epilepticus is characterized by ongoing (> 30 minutes) irregular jerking, often with partially retained awareness. These two features distinguish a myoclonic status epilepticus from a generalized clonic seizure, where consciousness is lost and the jerking is sustained and rhythmic.
Generalised myoclonic seizures
Myoclonus seizures
human_phenotype
Myoclonic epilepsy, progressive
HP:0002123
Generalized myoclonic seizures
true
A myoclonic seizure is a single or series of jerks (brief muscle contractions). Each jerk is typically milliseconds in duration. Myoclonic status epilepticus is characterized by ongoing (> 30 minutes) irregular jerking, often with partially retained awareness. These two features distinguish a myoclonic status epilepticus from a generalized clonic seizure, where consciousness is lost and the jerking is sustained and rhythmic.
https://www.epilepsydiagnosis.org/seizure/myoclonic-overview.html
Polymicrogyria is a congenital malformation of the cerebral cortex characterized by abnormal cortical layering (lamination) and an excessive number of small gyri (folds).
MSH:D065706
SNOMEDCT_US:4945003
UMLS:C0266464
Polymicrogyria is a common malformation of cortical development, where there is abnormal layering, excessive gyration (folding), and gyral fusion in the cerebral cortex. Polymicrogyria may be bilateral, or less commonly unilateral. It occurs most frequently in the perisylvian cortex (80%) and can result in the Sylvian fissure having an abnormal extension and orientation.
More grooves in brain
human_phenotype
HP:0002126
Polymicrogyria, one of the most common malformations of cortical development, is characterized histologically by the appearance of an excessive number of small cortical folds, often fused together, with disordered cortical lamination.
Polymicrogyria
true
Polymicrogyria is a common malformation of cortical development, where there is abnormal layering, excessive gyration (folding), and gyral fusion in the cerebral cortex. Polymicrogyria may be bilateral, or less commonly unilateral. It occurs most frequently in the perisylvian cortex (80%) and can result in the Sylvian fissure having an abnormal extension and orientation.
https://www.epilepsydiagnosis.org/aetiology/polymicrogyria-overview.html
Status epilepticus is a type of prolonged seizure. The definition is based on both the length of the seizure and the time point (t1) beyond which the seizure should be regarded as continuous seizure activity. The second time point (t2) is the time of ongoing seizure activity after which there is a risk of long-term consequences. See the comment for information on t1 and t2.
MSH:D013226
SNOMEDCT_US:230456007
UMLS:C0038220
Repeated seizures without recovery between them
human_phenotype
HP:0002133
In 2015 the ILAE Task Force on Classification of Status Epilepticus concluded that the evidence to define time points 1 and 2 in humans was incomplete. For tonic-clonic status epilepticus t1 is defined as 5 minutes and t2 as 30 minutes. For focal status epilepticus with impaired consciousness t1 is defined as 10 minutes and t2 over 60 minutes. For absence status epilepticus t1 is defined as 10-15 minutes and t2 is unknown. Status epilepticus is a condition that can have long-term consequences (after time point t2), including neuronal death, neuronal injury, and alteration of neuronal networks, depending on the type and duration of seizures.
Status epilepticus
Hemorrhage occurring between the arachnoid mater and the pia mater.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2744032/
MSH:D013345
SNOMEDCT_US:21454007
UMLS:C0038525
Subarachnoid (aneurysmal) Hemorrhage
Subarachnoid haemorrhage
human_phenotype
HP:0002138
Bleeding into the subarachnoid space the area between the arachnoid membrane and the pia mater surrounding the brain. Subarachnoid hemorrhage may occur spontaneously, usually from a ruptured cerebral aneurysm, or may result from head injury.
Subarachnoid hemorrhage
http://www.case.edu/EpSO.owl#SubarachnoidHemorrhage
true
MSH:D013064
UMLS:C0037822
Speech disorder
Speech impairment
Speech impediment
human_phenotype
HP:0002167
Neurological speech impairment
Hemorrhage occurring within the skull.
MSH:D020300
SNOMEDCT_US:1386000
UMLS:C0151699
Bleeding within the skull
Intracranial haemorrhage
human_phenotype
HP:0002170
Intracranial hemorrhage
A tendency to fall or the inability to keep oneself from falling; imbalance. The retropulsion test is widely regarded as the gold standard to evaluate postural instability, Use of the retropulsion test includes a rapid balance perturbation in the backward direction, and the number of balance correcting steps (or total absence thereof) is used to rate the degree of postural instability. Healthy subjects correct such perturbations with either one or two large steps, or without taking any steps, hinging rapidly at the hips while swinging the arms forward as a counterweight. In patients with balance impairment, balance correcting steps are often too small, forcing patients to take more than two steps. Taking three or more steps is generally considered to be abnormal, and taking more than five steps is regarded as being clearly abnormal. Markedly affected patients continue to step backward without ever regaining their balance and must be caught by the examiner (this would be called true retropulsion). Even more severely affected patients fail to correct entirely, and fall backward like a pushed toy soldier, without taking any corrective steps.
UMLS:C1843921
Balance impairment
human_phenotype
Abnormal retropulsion test
Imbalance
HP:0002172
Postural instability
https://www.epilepsy.com/learn/types-seizures/atonic-seizures
true
true
Seizures of with initial involvement of both cerebral hemispheres.
HP:0002409
HP:0007114
HP:0007339
MSH:D012640
SNOMEDCT_US:246545002
UMLS:C0234533
UMLS:C1833488
A generalized seizure is conceptualized as originating at some point within, and rapidly engaging, bilaterally distributed networks. Such bilateral networks can include cortical and subcortical structures, but do not necessarily include the entire cortex. Although individual seizure onsets can appear localized, the location and lateralization are not consistent from one seizure to another.
Generalized seizures
Generalized-onset seizures
human_phenotype
HP:0002197
Generalized seizures are sub-categorized into several major types: generalized tonic clonic; myoclonic; absence; and atonic.
Generalized-onset seizure
true
A generalized seizure is conceptualized as originating at some point within, and rapidly engaging, bilaterally distributed networks. Such bilateral networks can include cortical and subcortical structures, but do not necessarily include the entire cortex. Although individual seizure onsets can appear localized, the location and lateralization are not consistent from one seizure to another.
https://www.epilepsydiagnosis.org/seizure/generalized-seizure-groupoverview.html
A focal clonic seizure is a type of focal motor seizure characterized by sustained rhythmic jerking, that is regularly repetitive.
MSH:D020938
UMLS:C0752323
The movement involves sustained rhythmic jerking, this may involve a distal limb, one limb or one side of the body. The jerking may spread to involve parts of the body according to their representation on the motor cortex (according to the homunculus), this is known as a Jacksonian march.
Focal clonic seizures
Localised clonic seizure
Localized clonic seizure
Partial clonic seizure
Segmental clonic seizure
human_phenotype
HP:0002266
The movement involves sustained rhythmic jerking, this may involve a limb, half the face or one side of the body, and may spread according to a Jacksonian march: The jerking may spread to involve parts of the body according to their representation on the motor cortex (according to the homunculus).
Focal clonic seizure
http://www.medlink.com/article/focal_clonic_seizures
true
true
The movement involves sustained rhythmic jerking, this may involve a distal limb, one limb or one side of the body. The jerking may spread to involve parts of the body according to their representation on the motor cortex (according to the homunculus), this is known as a Jacksonian march.
https://www.epilepsydiagnosis.org/seizure/motor-overview.htm
Heterotopia or neuronal heterotopia are macroscopic clusters of misplaced neurons (gray matter), most often situated along the ventricular walls or within the subcortical white matter.
HP:0002281
HP:0007314
MSH:D002828
SNOMEDCT_US:128490007
SNOMEDCT_US:416286003
SNOMEDCT_US:417338002
UMLS:C0008519
Grey matter heterotopia is a malformation of cortical development, where cortical cells (grey matter) are present in inappropriate locations in the brain, due to interruption in their migration to their correct location in the cerebral cortex. Grey matter heterotopia may be unilateral or bilateral, singular or multiple, separate or contiguous.
Gray matter heterotopias
Grey matter heterotopia
Heterotopia
Heterotopias
Neuronal heterotopia
human_phenotype
HP:0002282
Gray matter heterotopia is caused by clumps of grey matter being located in the wrong part of the brain. It is characterized as a type of cortical malformation. The neurons in heterotopia may appear to be normal, except for their mislocation; nuclear studies have shown glucose metabolism equal to that of normally positioned gray matter. The condition causes a variety of symptoms, but usually includes some degree of epilepsy or recurring seizures, and often affects the brain's ability to function on higher levels. Symptoms range from nonexistent to profound, in which case heterotopia can result in severe seizure disorder, loss of motor skills, and mental retardation. Neuronal heterotopia consists of grey matter within the white matter, and the term grey matter heterotopia is more frequently used.
Gray matter heterotopia
true
Grey matter heterotopia is a malformation of cortical development, where cortical cells (grey matter) are present in inappropriate locations in the brain, due to interruption in their migration to their correct location in the cerebral cortex. Grey matter heterotopia may be unilateral or bilateral, singular or multiple, separate or contiguous.
https://www.epilepsydiagnosis.org/aetiology/grey-matter-heterotopia-overview.html
Habitual flow of saliva out of the mouth.
https://www.ncbi.nlm.nih.gov/pubmed/30125861
MSH:D012798
SNOMEDCT_US:275295002
SNOMEDCT_US:53827007
SNOMEDCT_US:62718007
UMLS:C0013132
UMLS:C0037036
Dribbling
Drooling
Sialorrhea
human_phenotype
HP:0002307
Drooling
true
true
Cephalgia, or pain sensed in various parts of the head, not confined to the area of distribution of any nerve.
HP:0000266
HP:0001354
https://www.ncbi.nlm.nih.gov/books/NBK2605/
MSH:D006261
SNOMEDCT_US:25064002
UMLS:C0018681
Headache
Headaches
human_phenotype
HP:0002315
Headache is one of the most common types of recurrent pain as well as one of the most frequent symptoms in neurology. In addition to occasional headaches, there are well-defined headache disorders that vary in incidence, prevalence and duration and can be divided into two broad categories. In secondary headache disorders, headaches are attributed to another condition, such as brain tumour or head injury; for the primary disorders the headache is not due to another condition.
Headache
https://www.epilepsy.com/learn/about-epilepsy-basics/what-happens-during-seizure
true
true
true
Excessive daytime sleepiness.
https://www.ncbi.nlm.nih.gov/books/NBK2605/
MSH:D012894
SNOMEDCT_US:271782001
SNOMEDCT_US:79519003
UMLS:C0013144
Drowsiness
Sleepy
human_phenotype
HP:0002329
Drowsiness
true
true
A type of focal-onset seizure in which awareness is preserved. Awareness during a seizure is defined as the patient being fully aware of themself and their environment throughout the seizure, even if immobile.
MSH:D004828
SNOMEDCT_US:117891000119100
SNOMEDCT_US:79348005
UMLS:C0234974
Awareness during a seizure is defined as the patient being fully aware of themself and their environment throughout the seizure, even if immobile. If awareness is preserved, the seizure is a focal aware seizure. Previously this seizure type was known as a simple partial seizure.
Focal aware seizures
Focal seizure with retained awareness
Focal seizure without impairment of awareness
Focal seizure without impairment of consciousness or awareness
Focal seizures without impairment of consciousness or awareness
Partial seizure with retained awareness
Partial seizure without impairment of awareness
Simple partial seizure
Simple partial seizures
human_phenotype
HP:0002349
In the previous (1981) ILAE classification of seizure types, the term 'simple partial seizure' was used to denote a focal aware seizure. Awareness during a seizure is defined as the patient being fully aware of themself and their environment throughout the seizure, even if immobile. If awareness is preserved throughout, then the seizure is a focal aware seizure. Previously the terms simple partial was used to describe focal aware seizures.
Focal aware seizure
true
Awareness during a seizure is defined as the patient being fully aware of themself and their environment throughout the seizure, even if immobile. If awareness is preserved, the seizure is a focal aware seizure. Previously this seizure type was known as a simple partial seizure.
https://www.epilepsydiagnosis.org/seizure/aware-overview.html
Abnormality observed by electroencephalogram (EEG), which is used to record of the brain's spontaneous electrical activity from multiple electrodes placed on the scalp.
HP:0001346
HP:0002429
HP:0006841
https://www.ncbi.nlm.nih.gov/pubmed/12199726
SNOMEDCT_US:274521009
UMLS:C0151611
Abnormal EEG
Abnormal electroencephalogram
EEG abnormalities
Electroencephalogram abnormal
Electroencephalogram abnormalities
human_phenotype
HP:0002353
EEG abnormality
true
A type of focal-onset saeizure characterized by impaired awareness. Awareness during a seizure is defined as the patient being fully aware of themself and their environment throughout the seizure, even if immobile. If awareness is impaired at any point during the seizure, the seizure is a focal impaired awareness seizure. The degree of loss of awareness may vary.
HP:0002278
HP:0011146
SNOMEDCT_US:4103001
UMLS:C0149958
UMLS:C0270834
If awareness is impaired at any point during the seizure, the seizure is a focal impaired awareness seizure. The degree of loss of awareness may vary. The terms complex partial seizure and focal dyscognitive seizure were previously used to denote a focal impaired awareness seizure.
Complex focal seizures
Complex partial seizures
DialepticSeizure
Dyscognitive seizures
Focal impaired awareness seizures
Focal seizures with impairment of consciousness or awareness
human_phenotype
Dialeptic seizure
HP:0002384
In the previous (1981) ILAE classification of seizure types, the term 'complex partial seizure' was used to denote a focal impaired awareness seizure. The term Dialeptic seizure referred to seizures that have as their main ictal manifestations an alteration of consciousness that is independent of ictal EEG manifestations. The term is no longer recommended according to the 2017 ILAE seizure classification.
Focal impaired awareness seizure
http://www.case.edu/EpSO.owl#DialepticSeizure
true
If awareness is impaired at any point during the seizure, the seizure is a focal impaired awareness seizure. The degree of loss of awareness may vary. The terms complex partial seizure and focal dyscognitive seizure were previously used to denote a focal impaired awareness seizure.
https://www.epilepsydiagnosis.org/seizure/focal-impaired-awareness-overview.html
The presence of complexes of repetitive spikes and waves in EEG.
UMLS:C4021757
EEG: spike and multispike waves, 3-4 hz
electroencephalogram with polyspike wave complex
human_phenotype
Polyspike-and-Slow-Wave Complex
HP:0002392
EEG with polyspike wave complexes
true
Myokymia consists of involuntary, fine, continuous, undulating contractions that spread across the affected striated muscle.
MSH:D020385
SNOMEDCT_US:27678003
UMLS:C0684219
human_phenotype
HP:0002411
Myokymia is characterized electrophysiologically by rhythmic or semi-rhythmic bursts of a single motor unit discharging several times a second at a rate of 3-8 Hz. These myokymic discharges are nonsynchronous in different muscles or even in the same muscle, with intervals of 100-200 milliseconds separating individual bursts. The spontaneous discharges are not initiated by voluntary movement, although they may increase with such activity.
Myokymia
The presence of a hamartoma of the hypothalamus.
MSH:C537158
SNOMEDCT_US:237714006
UMLS:C0342418
Hypothalamic hamartomas are rare malformations of fetal brain development, affecting development of the hypothalamus, and are placed within the spectrum of grey matter heterotopia. Pathologically, lesions show mature neuronal and glial cells and some myelinated fibres.
human_phenotype
Hamartoma
HP:0002444
Hypothalamic hamartoma is a malformation, not a tumor. Hypothalamic hamartomas grow at the rate of, or slower than, the surrounding brain tissue. A hamartoma of the hypothalamus appears as a non-enhancing mass in the floor of the third ventricle posterior to the optic chiasm that is isointense to grey matter on T1 and T2 pulse sequences of an MRI, but may have distinct intensity on FLAIR (neither cranial CT examination nor cranial ultrasound examination is adequate for diagnosis of hypothalamic hamartom). Individuals with hypothalamic hamartomas may have neurologic symptoms, although most are asymptomatic. Removal of the hypothalamic hamartoma is not indicated and often results in iatrogenic pituitary insufficiency.
Hypothalamic hamartoma
http://www.case.edu/EpSO.owl#Hamartoma
http://www.case.edu/EpSO.owl#HypothalamicHamartoma
true
true
true
Hypothalamic hamartomas are rare malformations of fetal brain development, affecting development of the hypothalamus, and are placed within the spectrum of grey matter heterotopia. Pathologically, lesions show mature neuronal and glial cells and some myelinated fibres.
https://www.epilepsydiagnosis.org/aetiology/hh-overview.html
A functional anomaly of the upper motor neuron. The upper motor neurons are neurons of the primary motor cortex which project to the brainstem and spinal chord via the corticonuclear, corticobulbar and corticospinal (pyramidal) tracts. They are involved in control of voluntary movements. Dysfunction leads to weakness, impairment of fine motor movements, spasticity, hyperreflexia and abnormal pyramidal signs.
UMLS:C1504405
UMLS:C1839042
Corticospinal tract dysfunction
Pyramidal tract dysfunction
human_phenotype
HP:0002493
A functional deficit of the tract that conveys nervous impulses from the motor cortex of the brain to the spinal cord. The corticospinal tract mediates discrete voluntary skilled movements. Clinical features of corticospinal tract dysfunction may include spasticity and weakness, particularly affecting the lower limbs, as well as hyperreflexia, clonus at the ankles and knees, and extensor plantar responses (Babinski response).
Upper motor neuron dysfunction
Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes. There is continuous (during wakefulness), high-amplitude (>200 Hz), generalized polymorphic slowing with no organized background and multifocal spikes demonstrated by electroencephalography (EEG).
https://www.ncbi.nlm.nih.gov/pubmed/29656099
MSH:D013036
SNOMEDCT_US:28055006
UMLS:C0684276
Hypsarrhythmia by EEG
human_phenotype
HP:0002521
Hypsarrhythmia
http://www.case.edu/EpSO.owl#Hypsarrhythmia
true
true
Abnormal intestinal contractions, such as spasms and intestinal paralysis, related to the loss of the ability of the gut to coordinate muscular activity because of endogenous or exogenous causes.
UMLS:C1836923
GI dysmotility
human_phenotype
HP:0002579
Gastrointestinal dysmotility
An abnormality of the vasculature.
UMLS:C0241657
Abnormality of blood vessels
Abnormality of the vasculature
Vascular abnormalities
human_phenotype
HP:0002597
Abnormality of the vasculature
Low Blood Pressure, vascular hypotension.
HP:0005127
HP:0006701
https://www.ncbi.nlm.nih.gov/pubmed/30378543
MSH:D007022
SNOMEDCT_US:45007003
UMLS:C0020649
Arterial hypotension
Low blood pressure
human_phenotype
HP:0002615
Hypotension
true
true
An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant neoplasm (tumour).
HP:0003008
HP:0006741
Abnormal tissue mass
MSH:D009369
NCIT:C3262
SNOMEDCT_US:108369006
SNOMEDCT_US:363346000
UMLS:C0006826
UMLS:C0027651
Epileptogenic tumors are, in the majority, biologically benign lesions that do not usually change over time. As a result, they do not require oncological surgery and surveillance, instead their management centres on control of seizures. Some tumors are highly associated with refractory epilepsy, and are amenable to epilepsy surgery due to their anatomic and imaging features, epilepsy surgery is therefore an important treatment option for this group of patients.
Neoplasia
Oncological abnormality
Tumor
Tumour
human_phenotype
Cancer
Oncology
HP:0002664
The World Health Organization (WHO) classifies neoplasms into four main groups: (i) benign neoplasm, (ii) in situ neoplasm, (iii) malignant neoplasm, and (iv) neoplasm of uncertain or unknown behavior. A malignant neoplasm is also known as cancer.
Neoplasm
true
Epileptogenic tumors are, in the majority, biologically benign lesions that do not usually change over time. As a result, they do not require oncological surgery and surveillance, instead their management centres on control of seizures. Some tumors are highly associated with refractory epilepsy, and are amenable to epilepsy surgery due to their anatomic and imaging features, epilepsy surgery is therefore an important treatment option for this group of patients.
https://www.epilepsydiagnosis.org/aetiology/tumors-overview.html
An abnormality of the immune system.
HP:0003257
HP:0003346
HP:0010986
UMLS:C4021753
Abnormality of the immune system
Immunological abnormality
human_phenotype
HP:0002715
The immune system is composed of organs and interdependent cell types that collectively protect the body from infections and from the growth of tumor cells. The organs of the immune system comprise the bone marrow, the spleen, the thymus,the lymph nodes, and the cell types comprise B cells, T cells, natural killer cells, granulocytes,dendritic cells, and macrophages.
Abnormality of the immune system
Increased resistance to the passage of air in the upper airway.
UMLS:C0740852
mposed upper airways obstruction (suffocation) is a rare but important cause of life-threatening syncope in infants. The events always occur in the presence of a particular individual with others never seeing the beginning of an event. The syncope takes longer to evolve than in reflex anoxic seizures or breath holding. This is one form of fabricated or induced illness.
IUAO
Upper airway obstruction
imposed upper airways obstruction
human_phenotype
HP:0002781
Upper airway obstruction
true
mposed upper airways obstruction (suffocation) is a rare but important cause of life-threatening syncope in infants. The events always occur in the presence of a particular individual with others never seeing the beginning of an event. The syncope takes longer to evolve than in reflex anoxic seizures or breath holding. This is one form of fabricated or induced illness.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#imposed-upper
Fyler:4200
UMLS:C4025677
Abnormal respiration
Functional respiratory abnormality
human_phenotype
Respiratory problem
HP:0002795
This category describes not-primarily structural lesions.
Functional respiratory abnormality
The presence of an ependymoma of the central nervous system.
MSH:D004806
NCIT:C3017
SNOMEDCT_US:443643007
SNOMEDCT_US:57706008
UMLS:C0014474
human_phenotype
HP:0002888
According to MPATH, ependymomas are neoplasms derived from the ependymal cells lining the ventricles and aqueduct of the brain and the central canal of the spinal cord and may be malignant or benign.
Ependymoma
http://www.case.edu/EpSO.owl#Ependymoma
An abnormally decreased calcium concentration in the blood.
https://www.ncbi.nlm.nih.gov/pubmed/20430655
MSH:D006996
SNOMEDCT_US:5291005
UMLS:C0020598
Hypocalcaemia
Low blood calcium levels
human_phenotype
HP:0002901
Hypocalcemia
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/electrolyte-abnormalities/hypocalcemia
true
true
An abnormally decreased sodium concentration in the blood.
MSH:D007010
SNOMEDCT_US:89627008
UMLS:C0020625
Low blood sodium levels
human_phenotype
HP:0002902
Hyponatremia
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/electrolyte-abnormalities/hyponatremia
true
An abnormally decreased magnesium concentration in the blood.
HP:0003284
SNOMEDCT_US:190855004
UMLS:C0151723
Low blood Mg levels
Low blood magnesium levels
human_phenotype
HP:0002917
Hypomagnesemia
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/electrolyte-abnormalities
true
An abnormality of the cerebrospinal fluid (CSF).
UMLS:C0151583
Abnormal CSF findings
Abnormality of the CSF
human_phenotype
HP:0002921
The cerebrospinal fluid (CSF) is secreted by the choroid plexus, and flows uninterrupted throughout the central nervous system (the central cerebrospinal canal of the spinal cord and through the four interconnected cerebral ventricles in the brain).
Abnormality of the cerebrospinal fluid
Abnormality originating in one or more muscles, i.e., of the set of muscles of body.
HP:0003197
HP:0003708
HP:0040290
UMLS:C4021745
Muscular abnormality
human_phenotype
HP:0003011
Abnormality of the musculature
Abnormality of the homeostasis (concentration) of a monoatomic ion.
HP:0003253
SNOMEDCT_US:237840007
UMLS:C1704431
UMLS:C4025654
Abnormality of ion homeostasis
Electrolyte disorders
human_phenotype
HP:0003111
Abnormal blood ion concentration
An abnormally increased sodium concentration in the blood.
MSH:D006955
SNOMEDCT_US:286926003
SNOMEDCT_US:39355002
UMLS:C0020488
High blood sodium levels
human_phenotype
HP:0003228
Hypernatremia
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/electrolyte-abnormalities-0
true
An elevation of the level of the enzyme creatine kinase (also known as creatine phosphokinase, CPK; EC 2.7.3.2) in the blood. CPK levels can be elevated in a number of clinical disorders such as myocardial infarction, rhabdomyolysis, and muscular dystrophy.
HP:0002147
HP:0002906
HP:0003078
HP:0003525
HP:0003531
HP:0008164
https://www.ncbi.nlm.nih.gov/pubmed/28288363
UMLS:C0151576
UMLS:C0241005
Elevated blood creatine phosphokinase
Elevated circulating creatine phosphokinase
Elevated creatine kinase
Elevated serum CPK
Elevated serum creatine kinase
Elevated serum creatine phosphokinase
High serum creatine kinase
Increased CPK
Increased creatine kinase
Increased creatine phosphokinase
Increased serum CK
Increased serum creatine kinase
Increased serum creatine phosphokinase
human_phenotype
HP:0003236
'has part' some
('increased amount' and ('inheres in' some
(IMR_0002602 and ('part of' some blood))) and ('has modifier' some abnormal))
Elevated serum creatine kinase
true
Sudden and involuntary contractions of one or more muscles.
HP:0009018
HP:0031988
MSH:D009120
SNOMEDCT_US:55300003
UMLS:C0026821
Muscle cramps
human_phenotype
Spasm
HP:0003394
Muscle spasm
true
Any abnormality of the soft tissues, including both connective tissue (tendons, ligaments, fascia, fibrous tissues, and fat).
UMLS:C4025596
human_phenotype
HP:0003549
Abnormality of connective tissue
A condition in which muscles cannot be moved quickly without accompanying pain or spasm.
HP:0009014
https://www.ncbi.nlm.nih.gov/pubmed/28139515
SNOMEDCT_US:16046003
UMLS:C0221170
stiffness
human_phenotype
HP:0003552
Muscle stiffness
https://www.epilepsysociety.org.uk/seizure-types#.XJsKjZgzbIU
true
true
true
Excessive production of saliva.
MSH:D012798
SNOMEDCT_US:275295002
SNOMEDCT_US:53827007
SNOMEDCT_US:62718007
UMLS:C0013132
UMLS:C0037036
Excessive production of saliva
Excessive salivation
Hypersalivation
Mouth watering
Oversalivation
Ptyalism
Watery mouth
human_phenotype
HP:0003781
Excessive salivation
UMLS:C0852413
Abnormal muscle tone
human_phenotype
HP:0003808
Abnormal muscle tone
Involuntary contractions of muscle leading to involuntary movements of extremities, neck, trunk, or face.
peter
2008-02-20T12:18:00Z
HP:0007120
SNOMEDCT_US:102542000
UMLS:C0235086
Involuntary movements
Involuntary muscle contractions
human_phenotype
HP:0004305
Involuntary movements
An abnormal increase or decrease of weight or an abnormal distribution of mass in the body.
peter
2008-02-27T03:21:00Z
HP:0010718
UMLS:C0878621
UMLS:C4025357
Abnormality of body weight
human_phenotype
Abnormality of habitus
HP:0004323
Abnormality of body weight
Abnormally low body weight.
peter
2008-02-27T03:22:00Z
HP:0001823
HP:0001826
MSH:D013851
MSH:D015431
SNOMEDCT_US:161832001
SNOMEDCT_US:248342006
SNOMEDCT_US:262285001
SNOMEDCT_US:89362005
UMLS:C0041667
UMLS:C1262477
UMLS:C1844806
Decreased body weight
Decreased weight
Low body weight
Low weight
Weight less than 3rd percentile
human_phenotype
HP:0004325
Decreased body weight
Any structural anomaly of the vitreous body.
peter
2008-02-27T04:20:00Z
UMLS:C4025356
Abnormal vitreous humour morphology
human_phenotype
HP:0004327
The vitreous humor is the clear gel that fills the space between the lens and the retina.
Abnormal vitreous humor morphology
peter
2008-02-27T04:25:00Z
UMLS:C4025354
Abnormal morphology of the posterior segment of the globe
Abnormality of the posterior segment of the eye
Abnormality of the posterior segment of the eyeball
Abnormality of the posterior segment of the globe
human_phenotype
HP:0004329
The posterior segment comprises the anterior hyaloid membrane and all of the optical structures behind it: the vitreous humor, retina, choroid, and optic nerve.
Abnormal posterior eye segment morphology
Any deviation from the normal concentration of calcium in the blood circulation.
peter
2008-03-17T04:15:00Z
HP:0040077
https://www.ncbi.nlm.nih.gov/pubmed/20430655
Abnormal blood calcium concentration
Abnormal blood calcium levels
Abnormal circulating Ca concentration
Abnormal circulating Ca2+ concentration
HP:0004363
Abnormal circulating calcium concentration
true
peter
2008-03-18T07:12:00Z
SNOMEDCT_US:3006004
UMLS:C0234428
Disturbances of consciousness
Lowered consciousness
Reduced consciousness/confusion
human_phenotype
HP:0004372
Reduced consciousness/confusion
Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength.
peter
2008-03-18T07:35:00Z
UMLS:C0375206
Paralysis or weakness of one side of body
human_phenotype
HP:0004374
Hemiplegia/hemiparesis
Inflammation of a vein associated with venous thrombosis (blood clot formation within the vein).
peter
2008-03-18T09:30:00Z
MSH:D013924
SNOMEDCT_US:64156001
UMLS:C0040046
human_phenotype
HP:0004418
Thrombophlebitis
https://www.longdom.org/open-access/a-case-of-thrombophlebitis-caused-by-carbamazepine-2161-1025.1000121.pdf
true
An abnormality of magnesium ion homeostasis.
HP:0008274
UMLS:C4020826
UMLS:C4025274
Abnormal Mg concentration
Abnormality of magnesium homeostasis
human_phenotype
Abnormal magnesium metabolism
HP:0004921
Abnormal magnesium concentration
Formation of a blood clot (thrombus) inside a vein, causing the obstruction of blood flow.
MSH:D020246
SNOMEDCT_US:111293003
UMLS:C0042487
Blood clot in vein
human_phenotype
HP:0004936
Venous thrombosis
A separation (dissection) of the layers of an artery.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3728598/
MSH:D000784
SNOMEDCT_US:233992003
SNOMEDCT_US:26845001
SNOMEDCT_US:710864009
SNOMEDCT_US:9406001
UMLS:C0002949
human_phenotype
HP:0005294
Arterial dissection
true
UMLS:C1846620
Unilateral clonic seizures
human_phenotype
HP:0006813
Hemiclonic seizures
Enlargement of all or parts of one cerebral hemisphere.
MSH:D065705
SNOMEDCT_US:253170008
UMLS:C0431391
Hemimegalencephaly is a malformation of cortical development, where there is an abnormally large and malformed cerebral hemisphere, with abnormal cortical formation, white matter volume and ventricular morphology. The other hemisphere is usually normal, but may be smaller in size. Hemimegalencephaly can co-occur with other structural abnormalities including enlargement of the ipsilateral cerebellar hemisphere and brainstem, polymicrogyria and grey matter heterotopia. It can occur in tuberous sclerosis, linear nevus sebaceous syndrome (50% have hemimegalencephaly), hypomelanosis of Ito, neurofibromatosis, Proteus syndrome and in Klippel-Trenaunay-Weber syndrome.
human_phenotype
HP:0007206
The affected hemisphere may have focal or diffuse neuronal migration defects, with areas of polymicrogyria, pachygyria, and heterotopia.
Hemimegalencephaly
true
Hemimegalencephaly is a malformation of cortical development, where there is an abnormally large and malformed cerebral hemisphere, with abnormal cortical formation, white matter volume and ventricular morphology. The other hemisphere is usually normal, but may be smaller in size. Hemimegalencephaly can co-occur with other structural abnormalities including enlargement of the ipsilateral cerebellar hemisphere and brainstem, polymicrogyria and grey matter heterotopia. It can occur in tuberous sclerosis, linear nevus sebaceous syndrome (50% have hemimegalencephaly), hypomelanosis of Ito, neurofibromatosis, Proteus syndrome and in Klippel-Trenaunay-Weber syndrome.
https://www.epilepsydiagnosis.org/aetiology/hemimegalencephaly-overview.html
Seizures of which initial semiology indicates, or is consistent with, initial activation of only part of one cerebral hemisphere.
peter
2008-03-31T05:27:00Z
HP:0002358
MSH:D012640
SNOMEDCT_US:29753000
UMLS:C0751495
Focal seizures are conceptualized as originating within networks limited to one hemisphere. They may be discretely localized or more widely distributed. Focal seizures may originate in subcortical structures. For each seizure type, ictal onset is consistent from one seizure to another, with preferential propagation patterns that can involve the ipsilateral and/or contralateral hemisphere.
Focal seizure
Focal seizures
Focal-onset seizures
Partial seizures
Seizure affecting one half of brain
human_phenotype
HP:0007359
Partial seizures can be classified as simple (consciousness is maintained) or complex (consciousness is impaired or lost).
Focal-onset seizure
true
Focal seizures are conceptualized as originating within networks limited to one hemisphere. They may be discretely localized or more widely distributed. Focal seizures may originate in subcortical structures. For each seizure type, ictal onset is consistent from one seizure to another, with preferential propagation patterns that can involve the ipsilateral and/or contralateral hemisphere.
https://www.epilepsydiagnosis.org/seizure/focal-seizure-overview.html#
peter
2008-04-04T12:35:00Z
HP:0000827
UMLS:C4024685
Puberty and gonadal disorders
human_phenotype
HP:0008373
Puberty and gonadal disorders
Spinal myoclonus is generally due to a tumor, infection, injury, or degenerative process of the spinal cord, and is characterized by involuntary rhythmic muscle contractions, usually at a rate of more than one per second. Myoclonus occurs synchronously in several muscles and can be increased in severity and frequency by fatigue or stress, but is usually unaffected by sensory stimuli. Spinal myoclonus ceases during sleep or anesthesia.
peter
2009-09-20T08:53:39Z
SNOMEDCT_US:698836007
UMLS:C3697670
Spinal myoclonus results in myoclonic jerks of the body that may not be modified by sleep or by voluntary action (therefore it may be present awake and asleep and at rest or during movement). Spinal segmental myoclonus is usually symptomatic of an underlying structural spinal lesion such as syringomyelia. It is confined to one or few contiguous myotomes and may occur irregularly or quasirhythmically, with a variable frequency. Propriospinal myoclonus is a form of spinal myoclonus where the axial muscles are recruited extensively along long propriospinal pathways. Typically, there are axial flexion jerks involving the neck, trunk and hips with a frequency of 1-6 Hz. Propriospinal myoclonus typically occurs spontaneously, especially in the recumbent position, or may be provoked by tapping of the abdomen or by eliciting tendon reflexes.
human_phenotype
HP:0010531
Spinal myoclonus
true
Spinal myoclonus results in myoclonic jerks of the body that may not be modified by sleep or by voluntary action (therefore it may be present awake and asleep and at rest or during movement). Spinal segmental myoclonus is usually symptomatic of an underlying structural spinal lesion such as syringomyelia. It is confined to one or few contiguous myotomes and may occur irregularly or quasirhythmically, with a variable frequency. Propriospinal myoclonus is a form of spinal myoclonus where the axial muscles are recruited extensively along long propriospinal pathways. Typically, there are axial flexion jerks involving the neck, trunk and hips with a frequency of 1-6 Hz. Propriospinal myoclonus typically occurs spontaneously, especially in the recumbent position, or may be provoked by tapping of the abdomen or by eliciting tendon reflexes.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#spinal-myoclonus
Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Paralysis due to lesions of the principle motor tracts is related to a lesion in the corticospinal, corticobulbar or brainstem descending (subcorticospinal) neurons.
peter
2009-10-01T08:30:25Z
UMLS:C4021255
Paralysis due to lesions of the principle motor tracts
human_phenotype
HP:0010549
Weakness due to upper motor neuron dysfunction
The presence of a cleft in the cerebral cortex unilaterally or bilaterally, usually located in the frontal area.
peter
2009-12-06T08:05:54Z
MSH:D065707
SNOMEDCT_US:253159001
SNOMEDCT_US:38353004
UMLS:C0266484
Schizencephaly is an uncommon malformation of cortical development that results in a cleft, lined by polymicrogyria, that extends from the ependyma of the ventricles to the pia mater. The majority of clefts are posterior frontal or parietal, but temporal or occipital location can occur.
human_phenotype
HP:0010636
Schizencephaly
true
Schizencephaly is an uncommon malformation of cortical development that results in a cleft, lined by polymicrogyria, that extends from the ependyma of the ventricles to the pia mater. The majority of clefts are posterior frontal or parietal, but temporal or occipital location can occur.
https://www.epilepsydiagnosis.org/aetiology/schizencephaly-overview.html
Enuresis occurring during sleeping hours.
sandra1
2010-03-01T09:11:31Z
https://www.ncbi.nlm.nih.gov/pubmed/30666028
MSH:D053206
SNOMEDCT_US:8009008
UMLS:C0270327
Nocturnal enuresis
human_phenotype
Bedwetting
HP:0010677
Enuresis nocturna
http://www.case.edu/EpSO.owl#Bedwetting
true
Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin.
peter
2010-04-30T11:40:43Z
MSH:D004890
MSH:D005483
SNOMEDCT_US:20255002
SNOMEDCT_US:238810007
SNOMEDCT_US:247441003
SNOMEDCT_US:271811009
SNOMEDCT_US:444827008
SNOMEDCT_US:70819003
SNOMEDCT_US:86735004
UMLS:C0016382
UMLS:C0041834
Redness of skin or mucous membrane
human_phenotype
HP:0010783
Erythema
Generalized seizures with sustained increase in muscle contraction lasting a few seconds to minutes.
peter
2010-07-10T03:03:51Z
HP:0002184
UMLS:C1836508
A generalized tonic seizure involves bilaterally increased tone of the limbs typically lasting seconds to a minute. They often occur out of sleep and in runs of varying intensity of tonic stiffening. The individual is unaware during these events. At the beginning of tonic seizures with more intense stiffening, individuals may make an expiratory sound. More severe and prolonged tonic seizures may have a vibratory component which may be confused with clonic jerking. Tonic seizures often occur in individuals with intellectual impairment.
Generalised tonic seizures
human_phenotype
Hypertonic seizures
HP:0010818
Characterized by a sudden increase in muscle tone whereby the body, arms, or legs make sudden stiffening movements and consciousness is usually preserved. Tonic seizures can occur during sleep. Tonic seizures usually affect both sides of the body, and cause a fall if the affected person was standing when the seizure started.
Generalized tonic seizures
true
A generalized tonic seizure involves bilaterally increased tone of the limbs typically lasting seconds to a minute. They often occur out of sleep and in runs of varying intensity of tonic stiffening. The individual is unaware during these events. At the beginning of tonic seizures with more intense stiffening, individuals may make an expiratory sound. More severe and prolonged tonic seizures may have a vibratory component which may be confused with clonic jerking. Tonic seizures often occur in individuals with intellectual impairment.
https://www.epilepsydiagnosis.org/seizure/tonic-overview.html
Atonic seizure is a type of motor seizure characterized by a sudden loss or diminution of muscle tone without apparent preceding myoclonic or tonic event lasting about 1 to 2 seconds, involving head, trunk, jaw, or limb musculature.
peter
2010-07-10T03:13:06Z
HP:0002124
SNOMEDCT_US:189198006
SNOMEDCT_US:42365007
UMLS:C0270846
UMLS:C1836509
Astatic seizure
Astatic seizures
Atonic seizures
Drop attacks
Drop seizures
Hypotonic seizure
human_phenotype
Hypotonic seizures
Sudden loss of muscle tone
HP:0010819
This term describes the initial semiology of the seizure without specifying whether the onset is focal or generalized. Thus it can be used for coding atonic seizures when the onset is not known.
Atonic seizure
http://www.case.edu/EpSO.owl#AtonicSeizure
https://www.epilepsydiagnosis.org/seizure/atonic-overview.html
true
A type of seizure characterized by crying or an outburst of crying as a major feature.
peter
2010-07-10T03:23:32Z
UMLS:C4023693
Characterized by the presence of stereotyped crying, this may be accompanied by lacrimation, sad facial expression and sobbing. The subjective emotion of sadness may or may not be present. These seizures often accompany focal emotional seizures with laughing in the setting of a hypothalamic hamartoma. They can also occur in seizures arising in frontal or temporal lobes. Crying is a rare feature of an epileptic seizure, and is more commonly a feature of a non-epileptic seizure.
human_phenotype
HP:0010820
The word dacrystic is derived from the Greek word dakryon (tear).
Dacrystic seizures
https://www.epilepsy.com/learn/types-seizures/gelastic-and-dacrystic-seizures
true
Characterized by the presence of stereotyped crying, this may be accompanied by lacrimation, sad facial expression and sobbing. The subjective emotion of sadness may or may not be present. These seizures often accompany focal emotional seizures with laughing in the setting of a hypothalamic hamartoma. They can also occur in seizures arising in frontal or temporal lobes. Crying is a rare feature of an epileptic seizure, and is more commonly a feature of a non-epileptic seizure.
https://www.epilepsydiagnosis.org/seizure/emotional-overview.html
A type of seizure characterized by laughing or an outburst of laughing as a major feature.
peter
2010-07-10T03:27:12Z
MSH:D004828
SNOMEDCT_US:89525009
UMLS:C0270820
Bursts of laughter or giggling, usually without appropriate related emotion of happiness, and described as mirthless. This seizure type is characteristic of seizures arising in the hypothalamus (see hypothalamic hamartoma), but can occur in seizures arising in the frontal or temporal lobes.
focal emotional seizure with laughing (gelastic)
human_phenotype
HP:0010821
Laughter is usually lasts briefly, about 30s. Laughing can also be a component of several other kinds of seizures such as partial seizures with motor symptoms, myoclonic seizures, axial tonic seizures, flexor spasms, generalized convulsive seizures, and petit mal absences.
Gelastic seizures
http://www.case.edu/EpSO.owl#GelasticSeizure
https://www.epilepsy.com/learn/types-seizures/gelastic-and-dacrystic-seizures
true
true
Bursts of laughter or giggling, usually without appropriate related emotion of happiness, and described as mirthless. This seizure type is characteristic of seizures arising in the hypothalamus (see hypothalamic hamartoma), but can occur in seizures arising in the frontal or temporal lobes.
https://www.epilepsydiagnosis.org/seizure/emotional-overview.html
Diffuse slowing of cerebral electrical activity recorded along the scalp by electroencephalography (EEG).
peter
2010-07-10T08:15:05Z
UMLS:C4021217
EEG with generalised slow activity
EEG: generalised slow activity
EEG: generalized slow activity
electroencephalogram with generalized slow activity
human_phenotype
Slow Activity
HP:0010845
Generalized slow activity in the EEG typically signifies serious dysfunction of the entire brain.
EEG with generalized slow activity
http://www.case.edu/EpSO.owl#SlowActivity
true
true
The presence of complexes of slow spikes and slow waves (<2.5 Hz) in electroencephalography (EEG).
peter
2010-07-10T08:18:25Z
UMLS:C4023686
spike and slow wave complex
human_phenotype
HP:0010847
Spikes (<70 ms) and sharp waves (70-200 ms) are sharp transient waves that have a strong association with epilepsy. No difference is noted in terms of clinical significance of spikes and sharp waves. Significant spikes usually are followed by a slow wave.
EEG with spike-wave complexes (<2.5 Hz)
true
Complexes of spikes (<70 ms) and sharp waves (70-200 ms), which are sharp transient waves that have a strong association with epilepsy, in cerebral electrical activity recorded along the scalp by electroencephalography (EEG).
peter
2010-07-10T08:23:28Z
UMLS:C4023683
electroencephalogram with spike wave complex
human_phenotype
Spike Wave
HP:0010850
EEG with spike-wave complexes
true
EEG abnormalities (epileptiform discharges) evoked by flashing lights or black and white striped patterns.
peter
2010-07-11T08:10:17Z
HP:0001330
UMLS:C3552821
Photoparoxysmal response on EEG
electroencephalogram with photoparoxysmal response
human_phenotype
Photoparoxysmal Response
HP:0010852
In some patients, seizures can be provoked by specific external factors (reflex epilepsy), including flickering lights and patterns. These patients commonly show epileptiform discharges in the EEG when stimulated with flashing lights, black and white striped patterns and television. These evoked EEG abnormalities are called photoparoxysmal responses.
EEG with photoparoxysmal response
http://www.case.edu/EpSO.owl#PhotoparoxysmalResponse
Periodic lateralized epileptiform discharges (PLEDs)are periodic, lateralized, and epileptiform. PLEDs show a relatively constant interval between discharges (0.5 to 3 seconds).
peter
2010-07-11T08:25:02Z
UMLS:C4021215
EEG: periodic lateralized epileptiform discharges
electroencephalogram with periodic lateralized epileptiform discharge
human_phenotype
Periodic Lateralized Epileptiform Discharge
HP:0010853
The epileptiform morphology of the discharges is not invariable, as PLEDS are often closer to slow waves than to sharp waves in morphology. PLEDs are often are caused by acute destructive focal lesions. PLEDs are often a transitory phenomenon, disappearing in a matter of weeks, even if the causal lesion persists, and often transforming into a less specific but more persistent focal slow appearance.
EEG with periodic lateralized epileptiform discharges
http://www.case.edu/EpSO.owl#PeriodicLateralizedEpileptiformDischarge
An abnormal level of a circulating protein in the blood.
peter
2010-09-07T01:51:12Z
UMLS:C4020763
UMLS:C4020764
UMLS:C4023679
Abnormality of circulating protein level
human_phenotype
Blood protein disease
Serum protein abnormality
HP:0010876
Abnormal circulating protein level
An abnormality of divalent inorganic cation homeostasis.
peter
2011-01-06T07:47:18Z
UMLS:C4023648
Abnormality of divalent inorganic cation homeostasis
human_phenotype
HP:0010927
Abnormal blood inorganic cation concentration
An abnormality of cation homeostasis.
peter
2011-01-06T10:36:04Z
UMLS:C4023646
Abnormality of cation homeostasis
human_phenotype
HP:0010929
Abnormal blood cation concentration
An abnormality of monovalent inorganic cation homeostasis.
peter
2011-01-06T10:38:38Z
UMLS:C4023645
Abnormality of monovalent inorganic cation homeostasis
human_phenotype
HP:0010930
Abnormal blood monovalent inorganic cation concentration
An abnormal concentration of sodium.
peter
2011-01-06T10:40:20Z
UMLS:C4023644
Abnormal blood Na+ levels
Abnormal circulating Na concentration
Abnormality of sodium homeostasis
human_phenotype
HP:0010931
Abnormal blood sodium concentration
An abnormality of the lower urinary tract.
peter
2011-01-16T11:39:17Z
UMLS:C4023640
human_phenotype
HP:0010936
The lower urinary tract is a subdivision of urinary system which consists of the urinary bladder and the urethra.
Abnormality of the lower urinary tract
A functional abnormality of the immune system.
peter
2011-02-07T04:28:55Z
UMLS:C4023616
human_phenotype
HP:0010978
Abnormality of immune system physiology
An abnormality of the systemic arterial tree, which consists of the aorta and other systemic arteries.
peter
2011-02-16T08:46:49Z
HP:0002620
HP:0005114
Fyler:2600
SNOMEDCT_US:234119001
UMLS:C0151489
UMLS:C4021205
Abnormal systemic artery morphology
Abnormality of the systemic arterial tree
Systemic artery abnormality
human_phenotype
Arterial abnormalities
HP:0011004
Abnormal systemic arterial morphology
peter
2011-02-28T08:46:34Z
UMLS:C4023591
human_phenotype
HP:0011021
Abnormality of circulating enzyme level
An abnormality of the gastrointestinal tract.
peter
2011-03-01T07:52:06Z
MSH:D004066
MSH:D005767
SNOMEDCT_US:119292006
SNOMEDCT_US:25374005
SNOMEDCT_US:53619000
UMLS:C0012242
UMLS:C0017178
UMLS:C4023588
Abnormality of the GI tract
Abnormality of the gastrointestinal tract
human_phenotype
Digestive system disease
Gastrointestinal disease
HP:0011024
Abnormality of the gastrointestinal tract
Abnormal functionality of the cardiovascular system.
peter
2011-03-03T10:23:19Z
UMLS:C4023587
Abnormality of cardiovascular system physiology
human_phenotype
HP:0011025
Abnormal cardiovascular system physiology
An abnormality of blood circulation.
peter
2011-03-03T10:25:21Z
UMLS:C4020760
UMLS:C4023585
human_phenotype
Blood circulation disorder
HP:0011028
Abnormality of blood circulation
The presence of hemorrhage within the body.
peter
2011-03-03T10:26:26Z
UMLS:C1390214
Internal bleeding
Internal haemorrhage
human_phenotype
HP:0011029
Internal hemorrhage
A sudden flexion, extension or mixed extension-flexion of predominantly proximal and truncal muscles which is usually more sustained than a myoclonic movement but not as sustained as a tonic seizure.
peter
2011-05-04T01:56:31Z
MSH:D013036
SNOMEDCT_US:28055006
UMLS:C0037769
UMLS:C1527366
An epileptic spasm is a sudden flexion, extension or mixed flexion-extension of proximal and truncal muscles, lasting 1-2 seconds i.e. longer than a myoclonic jerk (which lasts milliseconds) but not as long as a tonic seizure (which lasts > 2 seconds). Spasms typically occur in a series, usually on wakening. Subtle forms may occur with only chin movement, grimacing, or head nodding.
Salaam convulsions
Salaam seizures
human_phenotype
West syndrome
HP:0011097
The maximum age of onset is between 3 and 12 months, the peak being at 6 months. However, spasms may start from birth, or appear long after the age of 12 months, including into adulthood. Infantile spasms represent a specific type of seizure seen in an epilepsy syndrome of infancy and childhood known as West Syndrome. West Syndrome is characterized by infantile spasms, developmental regression, and hypsarrhythmia (as demonstrated by electroencephalography).
Epileptic spasms
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
true
An epileptic spasm is a sudden flexion, extension or mixed flexion-extension of proximal and truncal muscles, lasting 1-2 seconds i.e. longer than a myoclonic jerk (which lasts milliseconds) but not as long as a tonic seizure (which lasts > 2 seconds). Spasms typically occur in a series, usually on wakening. Subtle forms may occur with only chin movement, grimacing, or head nodding.
https://www.epilepsydiagnosis.org/seizure/epileptic-spasms-overview.html
Any morphological abnormality of the skin.
peter
2011-06-12T10:03:23Z
Fyler:4133
UMLS:C4023528
Abnormal skin morphology
Abnormal skin structure
human_phenotype
HP:0011121
Abnormality of skin morphology
Absence seizures accompanied by brief, repetitive, often rhythmic, fast (4-6 Hz) myoclonic jerks of the eyelids with simultaneous upward deviation of the eyeballs and extension of the head. Seizures are typically very brief (less than 6s in duration) and multiple seizures occur on a daily basis. Mostly awareness is retained.
peter
2011-10-18T02:03:21Z
UMLS:C4023513
Absence seizures with eyelid myoclonia
human_phenotype
HP:0011149
Absence seizure with eyelid myoclonia
https://www.epilepsydiagnosis.org/seizure/awsf-eyelid-myoclonia-overview.html
true
Rhythmic myoclonic jerks of the shoulders and arms with tonic abduction that results in progressive lifting of the arms during the seizure. The myoclonic jerks are typically bilateral but may be unilateral or asymmetric. Perioral myoclonias and rhythmic jerks of the head and legs may occur. Seizures last 10-60 seconds and typically occur daily. Level of awareness varies from complete loss of awareness to retained awareness.
peter
2011-10-18T02:04:35Z
UMLS:C4023512
Myoclonic absences
myoclonic absence seizure
human_phenotype
HP:0011150
Myoclonic absence
https://www.epilepsydiagnosis.org/seizure/awsf-myoclonic-absence-overview.html
true
A type of focal-onset seizure characterized by a motor sign as its initial semiological manifestation.
peter
2011-10-18T02:33:17Z
MSH:D020938
SNOMEDCT_US:128612007
SNOMEDCT_US:82401000
UMLS:C0016399
A motor onset seizure involves motor activity (movement) and may be due to either an increase or decrease in contraction in a muscle or group of muscles. Depending on the muscle groups involved and the way they are affected, the movement features of a motor onset seizure may be simple or more complex.
Focal motor seizures
Localised motor seizure
Localized motor seizure
Localized motor seizures
Partial motor seizure
Partial motor seizures
Segmental motor seizure
human_phenotype
HP:0011153
A motor onset seizure involves motor activity (movement) and may be due to either an increase or decrease in contraction in a muscle or group of muscles. Depending on the muscle groups involved and the way they are affected, the movement features of a motor onset seizure may be simple or more complex.
Focal motor seizure
https://www.medicinenet.com/script/main/art.asp?articlekey=32972
true
true
A motor onset seizure involves motor activity (movement) and may be due to either an increase or decrease in contraction in a muscle or group of muscles. Depending on the muscle groups involved and the way they are affected, the movement features of a motor onset seizure may be simple or more complex.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Focal seizures with an objectively documented and distinct alteration of autonomic nervous system function involving cardiovascular, pupillary, gastrointestinal, sudomotor, vasomotor and thermoregularity functions.
peter
2011-10-18T02:23:31Z
UMLS:C4023509
Are characterized by alterations in systems controlled by the autonomic nervous system at seizure onset. These may occur with or without objective clinical signs of a seizure evident to the observer.
Focal autonomic seizures
autonomic
human_phenotype
HP:0011154
Focal autonomic seizure
true
Are characterized by alterations in systems controlled by the autonomic nervous system at seizure onset. These may occur with or without objective clinical signs of a seizure evident to the observer.
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
A focal sensory seizure involves a sensation being experienced at seizure onset, without objective clinical signs of a seizure evident to the observer.
peter
2011-10-18T02:26:40Z
MSH:D004827
SNOMEDCT_US:18618006
UMLS:C0236018
Epileptic aura
sensory
human_phenotype
HP:0011157
Focal sensory seizure
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
true
A type of focal sensory seizure that is characterized by elementary auditory phenomena including buzzing, ringing, drumming or single tones.
peter
2011-10-18T02:26:59Z
https://www.ncbi.nlm.nih.gov/pubmed/15642493
https://www.ncbi.nlm.nih.gov/pubmed/27857611
UMLS:C1838063
Characterized by elementary auditory phenomena including buzzing, ringing, drumming or single tones. More complex auditory hallucinations such as voices are considered a focal cognitive seizure. Focal sensory auditory seizures involve auditory cortex in the lateral superior temporal lobe.
Auditory Aura
Auditory aura
human_phenotype
Complex Auditory Aura
Simple Auditory Aura
HP:0011158
More complex auditory hallucinations such as voices are considered a focal cognitive seizure. Focal sensory auditory seizures involve auditory cortex in the lateral superior temporal lobe.
Focal sensory auditory seizure
http://www.case.edu/EpSO.owl#AuditoryAura
http://www.case.edu/EpSO.owl#ComplexAuditoryAura
http://www.case.edu/EpSO.owl#ElementaryAuditoryAura
true
true
Characterized by elementary auditory phenomena including buzzing, ringing, drumming or single tones. More complex auditory hallucinations such as voices are considered a focal cognitive seizure. Focal sensory auditory seizures involve auditory cortex in the lateral superior temporal lobe.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
Auras with abdominal discomfort including nausea, emptiness, tightness, churning, butterflies, malaise, pain, and hunger; sensation may rise to chest or throat. Some phenomena may reflect ictal autonomic dysfunction.
peter
2011-10-18T02:27:58Z
https://www.ncbi.nlm.nih.gov/pubmed/10919145
UMLS:C4023506
Abdominal aura
Visceral aura
human_phenotype
HP:0011159
Epigastric auras
true
true
Auras with taste sensations including acidic, bitter, salty , sweet or metallic tastes.
peter
2011-10-18T02:28:36Z
https://www.ncbi.nlm.nih.gov/pubmed/15642493
https://www.ncbi.nlm.nih.gov/pubmed/27857611
MSH:D006212
SNOMEDCT_US:29139005
UMLS:C0233766
Characterized by taste phenomena including acidic, bitter, salty, sweet, or metallic tastes. These seizures involve the parietal operculum and the insula.
Gustatory aura
Gustatory auras
Taste hallucinations
human_phenotype
HP:0011160
Focal sensory gustatory seizure
true
true
Characterized by taste phenomena including acidic, bitter, salty, sweet, or metallic tastes. These seizures involve the parietal operculum and the insula.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
Auras with sensation of odor, usually disagreeable.
peter
2011-10-18T02:28:55Z
UMLS:C4023504
Characterized by olfactory phenomena - usually an odor, which is often unpleasant. These seizures involve the mesial temporal or orbitofrontal regions.
human_phenotype
HP:0011161
Olfactory auras
true
Characterized by olfactory phenomena - usually an odor, which is often unpleasant. These seizures involve the mesial temporal or orbitofrontal regions.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
Auras with affective, mnemonic or composite perceptual phenomena including illusory or composite hallucinatory events.
peter
2011-10-18T02:29:23Z
UMLS:C4023503
human_phenotype
HP:0011162
Events may appear alone or in combination. Included are feelings of depersonalisation. These phenomena have subjective qualities similar to those experienced in life but are recognised by the subject as occurring outside of actual context.
Psychic auras
http://www.case.edu/EpSO.owl#PsychicAura
Auras with sensation of tingling, numbness, electric shock sensations, pain, sense of movement, or desire to move.
peter
2011-10-18T02:29:52Z
https://www.ncbi.nlm.nih.gov/pubmed/15911361
https://www.ncbi.nlm.nih.gov/pubmed/26249726
UMLS:C4023502
Characterized by sensory phenomena including tingling, numbness, electric-shock like sensation, pain, sense of movement, or desire to move. These seizures involve the sensorimotor cortex.
Somatosensory auras
human_phenotype
HP:0011163
Somatosensory auras
true
true
true
Characterized by sensory phenomena including tingling, numbness, electric-shock like sensation, pain, sense of movement, or desire to move. These seizures involve the sensorimotor cortex.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
A sensation consistent with involvement of the autonomic nervous system, including cardiovascular, gastrointestinal, sudomotor, vasomotor and thermoregulatory functions.
peter
2011-10-18T02:30:10Z
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432285/
UMLS:C4021200
Autonomic Aura
Autonomic auras
human_phenotype
HP:0011164
Vegetative auras
http://www.case.edu/EpSO.owl#AutonomicAura
true
Auras with sensation of flashing or flickering lights, spots, simple patterns, scotomata, or amaurosis.
peter
2011-10-18T02:31:15Z
HP:0007175
UMLS:C1850765
Characterized by elementary visual hallucinations such as flashing or flickering lights/colours, or other shapes, simple patterns, scotomata, or amaurosis. More complex visual hallucinations such as seeing formed images are considered a focal cognitive seizure. Focal sensory visual seizures arise in the occipital lobe.
human_phenotype
HP:0011165
Note that there is a distinction between Visual aura and Simple partial occipital seizures. See HPO term HP:0025121 for comments.
Visual auras
http://www.case.edu/EpSO.owl#VisualAura
https://academic.oup.com/brain/article/123/2/244/346024
true
true
true
Characterized by elementary visual hallucinations such as flashing or flickering lights/colours, or other shapes, simple patterns, scotomata, or amaurosis. More complex visual hallucinations such as seeing formed images are considered a focal cognitive seizure. Focal sensory visual seizures arise in the occipital lobe.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
peter
2011-10-18T02:34:14Z
UMLS:C4023501
A single or short cluster of brief muscle contractions (jerks), each jerk is typically milliseconds in duration.
Local myoclonic seizures
Partial myoclonic seizures
human_phenotype
HP:0011166
Focal myoclonic seizures
true
A single or short cluster of brief muscle contractions (jerks), each jerk is typically milliseconds in duration.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Seizures with sustained increase in muscle contraction in parts of the body lasting a few seconds to minutes.
peter
2011-10-18T02:35:03Z
MSH:D020938
UMLS:C0752324
Increased muscle tone, usually lasting for seconds to minute
Local tonic seizures
Partial tonic seizures
human_phenotype
HP:0011167
Focal tonic seizures
https://www.epilepsy.com/learn/types-seizures/tonic-seizures
true
true
Increased muscle tone, usually lasting for seconds to minute
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Seizures with increase in rate of ongoing movements or inappropriately rapid performance of a movement involving predominantly proximal limb or axial muscles producing irregular sequential ballistic movements, such as pedaling, pelvic thrashing, rocking movements.
hecht
2011-11-19T10:13:17Z
UMLS:C4023497
This seizure type involves movements of proximal limb or axial muscles, producing irregular large amplitude movements, such as pedaling, pelvic thrusting, jumping, thrashing and/or rocking movements.
focal hyperkinetic seizure
human_phenotype
HP:0011174
Hyperkinetic seizures
https://link.springer.com/referenceworkentry/10.1007%2F978-1-84882-128-6_61
true
true
This seizure type involves movements of proximal limb or axial muscles, producing irregular large amplitude movements, such as pedaling, pelvic thrusting, jumping, thrashing and/or rocking movements.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Tonic seizures with a sustained, forced conjugate ocular, cephalic and/or truncal rotation or lateral deviation from the midline.
hecht
2011-11-19T10:14:54Z
MSH:D020938
SNOMEDCT_US:246530009
UMLS:C0422846
human_phenotype
HP:0011175
Versive seizures
true
Epileptiform activity refers to distinctive EEG waves or complexes distinguished from background activity found in in a proportion of human subjects with epilepsy, but which can also be found in subjects without seizures. Interictal epileptiform activity refers to such activity that occurs in the absence of a clinical or subclinical seizure.
hecht
2011-11-19T10:32:25Z
UMLS:C4023491
Epileptiform EEG discharges
human_phenotype
HP:0011182
Epileptiform EEG discharges include small sharp spikes (SSSs), wicket spikes, 14- and 6-Hz positive spikes, phantom spike and waves, psychomotor variant, subclinical rhythmic EEG discharges of adults (SREDA), and midline theta rhythm.
Interictal epileptiform activity
EEG discharges recorded in particular areas of a localized (focal) abnormality in cerebral electrical activity recorded along the scalp by electroencephalography (EEG).
hecht
2011-11-19T10:39:02Z
HP:0010840
UMLS:C4021199
Focal EEG Abnormality
human_phenotype
HP:0011185
Note that a focal EEG abnormality is not synonymous with "focal epileptiform discharges" because a focal EEG abnormality is not necessarily epileptiform (e.g., it could be a focal slowing).
EEG with focal epileptiform discharges
Focal epileptiform discharges with spreading to contralateral hemisphere but without secondary generalization.
hecht
2011-11-19T10:40:22Z
UMLS:C4023488
human_phenotype
HP:0011186
Focal epileptiform discharges with limited propagation to contralateral hemisphere
EEG discharges recorded on the entire scalp typically seen in persons with epilepsy.
hecht
2011-11-19T11:15:46Z
HP:0010842
UMLS:C4023476
EEG with generalised epileptiform discharges
human_phenotype
EpileptiFormPattern
Epileptiform Discharge
HP:0011198
Spikes (<70 ms) and sharp waves (70-200 ms) are sharp transient waves that have a strong association with epilepsy. No difference is noted in terms of clinical significance of spikes and sharp waves. Significant spikes usually are followed by a slow wave.
EEG with generalized epileptiform discharges
http://www.case.edu/EpSO.owl#EpileptiformPattern
true
true
EEG with abnormally slow frequencies.
hecht
2011-11-19T11:26:47Z
UMLS:C4023471
human_phenotype
HP:0011203
EEG with abnormally slow frequencies
EEG showing diffuse slowing without interruption.
hecht
2011-11-19T11:28:47Z
UMLS:C4023470
electroencephalogram with continuous slow activity
human_phenotype
Continous Slow Activity
HP:0011204
EEG with continuous slow activity
true
Non-continuous diffuse slowing of electroencephalographic patterns.
hecht
2011-11-19T11:30:20Z
UMLS:C4023469
human_phenotype
Intermittent Slow
Intermittent Slow Activity
HP:0011205
EEG with intermittent slow activity
http://www.case.edu/EpSO.owl#IntermittentSlowActivity
true
peter
2011-12-29T08:52:53Z
MSH:D017445
SNOMEDCT_US:11263005
UMLS:C0162819
UMLS:C1842892
Skin vascular malformation
human_phenotype
Vascular abnormalities restricted to skin
HP:0011276
Vascular skin abnormality
An abnormality of the skin that is not localized to any one particular region.
peter
2012-03-01T01:55:07Z
UMLS:C4021157
Generalised abnormality of skin
Generalized abnormality of skin
human_phenotype
HP:0011354
Generalized abnormality of skin
An anomaly of the control or production of movement in the central nervous system.
peter
2012-03-18T02:29:04Z
UMLS:C4023354
human_phenotype
HP:0011442
Abnormality of central motor function
Cognitive, psychiatric or memory anomaly.
peter
2012-03-18T04:23:59Z
UMLS:C4023352
human_phenotype
HP:0011446
Abnormality of higher mental function
A type of infection of the central nervous system that can be regarded as a sign of a pathological susceptibility to infection.
peter
2012-03-18T05:57:29Z
MSH:D002494
SNOMEDCT_US:128117002
UMLS:C0007684
Central nervous system infection
human_phenotype
HP:0011450
Unusual CNS infection
peter
2012-03-25T05:35:45Z
UMLS:C0740651
human_phenotype
HP:0011458
Abdominal symptom
An abnormality in the range and ease of motion of joints across their normal range.
peter
2012-04-18T07:09:28Z
UMLS:C4023216
human_phenotype
HP:0011729
Abnormality of joint mobility
peter
2012-04-23T07:27:57Z
UMLS:C4023183
Abnormality of facial soft tissue
Anomaly of facial soft tissue
Deformity of facial soft tissue
Malformation of facial soft tissue
human_phenotype
HP:0011799
Abnormality of facial soft tissue
A functional abnormality of a skeletal muscle.
peter
2012-04-25T02:00:15Z
UMLS:C4023182
Abnormality of muscle physiology
Issue with muscle function
human_phenotype
HP:0011804
Abnormal muscle physiology
A structural abnormality of a skeletal muscle.
peter
2012-04-25T02:00:34Z
HP:0003735
UMLS:C4023181
Abnormal muscle morphology
Abnormality of muscle morphology
Abnormally shaped muscle
Issue with muscle structure
human_phenotype
HP:0011805
Abnormal skeletal muscle morphology
An abnormality of the form, structure, or size of the skeletal system.
peter
2012-05-07T08:08:37Z
UMLS:C4023165
Abnormally shaped skeletal
human_phenotype
HP:0011842
Abnormality of skeletal morphology
An abnormality of the function of the skeletal system.
peter
2012-05-07T08:09:43Z
UMLS:C4023164
human_phenotype
HP:0011843
Abnormality of skeletal physiology
EEG with generalized sharp transient waves of a duration less than 80 msec.
hecht
2012-07-20T11:39:52Z
UMLS:C2206531
EEG with generalised spikes
electroencephalogram with generalized spike
human_phenotype
Spike Wave
HP:0012000
EEG with generalized spikes
http://www.case.edu/EpSO.owl#Spike
true
true
EEG with repetitive generalized sharp transient waves of a duration less than 80 msec.
hecht
2012-07-20T11:41:07Z
UMLS:C4023088
EEG with generalised polyspikes
electroencephalogram with generalized polyspike
human_phenotype
PolySpike
HP:0012001
EEG with generalized polyspikes
http://www.case.edu/EpSO.owl#PolySpike
Affective, mnemonic or composite perceptual auras with subjective qualities similar to those experienced in life but are recognized by the subject as occurring outside of actual context.
hecht
2012-07-20T11:50:13Z
https://www.ncbi.nlm.nih.gov/pubmed/12134331
UMLS:C4023087
human_phenotype
HP:0012002
See the Glossary of Descriptive Terminology for Ictal Semiology at http://www.ilae.org.
Experiential auras
true
Auras which reflect ictal dysmnesia such as: feelings as familiarity (deja-vu) and unfamiliarity (jamais-vu).
hecht
2012-07-20T11:53:39Z
https://www.ncbi.nlm.nih.gov/pubmed/12609279
UMLS:C4023085
mnemonic
human_phenotype
HP:0012004
See the Glossary of Descriptive Terminology for Ictal Semiology at http://www.ilae.org.
Mnemonic auras
true
true
A subjective feeling that an experience which is occurring for the first time has been experienced before.
hecht
2012-07-20T11:54:16Z
https://www.ncbi.nlm.nih.gov/books/NBK2605/
MSH:D003690
SNOMEDCT_US:313005
UMLS:C0011194
Deja vu
human_phenotype
HP:0012005
Deja vu
true
true
A subjective feeling that an experience which has occurred before is being experienced for the first time.
hecht
2012-07-20T11:55:38Z
https://www.ncbi.nlm.nih.gov/books/NBK2605/
SNOMEDCT_US:28249008
UMLS:C0233803
human_phenotype
HP:0012006
Jamais vu
true
true
A structural anomaly of the globe of the eye, or bulbus oculi.
peter
2013-10-13T03:44:43Z
HP:0000489
HP:0012374
Fyler:4863
UMLS:C4022925
Abnormal eye morphology
Abnormality of the globe
Abnormally shaped eye
human_phenotype
HP:0012372
previously: Abnormal globe morphology
Abnormal eye morphology
A functional anomaly of the eye.
peter
2013-10-13T03:45:37Z
UMLS:C4022924
Abnormal eye physiology
human_phenotype
HP:0012373
Abnormal eye physiology
Partial or complete loss of vision in one half of the visual field of one or both eyes.
peter
2013-10-13T07:55:21Z
https://www.ncbi.nlm.nih.gov/pubmed/30068811
MSH:D006423
SNOMEDCT_US:77674003
UMLS:C0018979
Hemianopsia
human_phenotype
HP:0012377
Hemianopia
true
true
An abnormality of the partial pressure of oxygen or carbon dioxide in the arterial blood.
peter
2013-11-10T04:59:20Z
SNOMEDCT_US:312391003
UMLS:C0476337
Abnormal blood gas level
human_phenotype
HP:0012415
Abnormal blood gas level
An abnormally low level of blood oxygen.
peter
2013-11-10T05:07:07Z
https://www.ncbi.nlm.nih.gov/pubmed/22791548
MSH:D000860
SNOMEDCT_US:389087006
UMLS:C0700292
Low blood oxygen level
human_phenotype
Hypoxia
HP:0012418
Note that hypoxemia is defined as a condition where arterial oxygen tension is below normal (80-100mmHg). Hypoxia is defined as the failure of oxygenation at the tissue level. Hypoxia is not measured directly by a standard laboratory value.
Hypoxemia
true
A structural abnormality of the brain, which has as its parts the forebrain, midbrain, and hindbrain.
peter
2013-11-23T02:38:00Z
https://www.ncbi.nlm.nih.gov/pubmed/30661063
UMLS:C4021085
Abnormal shape of brain
Abnormality of the brain
human_phenotype
HP:0012443
Abnormality of brain morphology
A visual anomaly in which images appear distorted. A grid of straight lines appears wavy and parts of the grid may appear blank.
peter
2013-12-08T08:21:46Z
https://www.ncbi.nlm.nih.gov/pubmed/28488762
MSH:D014786
SNOMEDCT_US:42134006
UMLS:C0271185
human_phenotype
HP:0012508
Metamorphopsia
http://www.case.edu/EpSO.owl#Metamorphopsia
true
true
A functional anomaly of the nervous system.
peter
2014-01-19T08:02:46Z
UMLS:C4022811
human_phenotype
HP:0012638
Abnormality of nervous system physiology
A structural anomaly of the nervous system.
peter
2014-01-19T08:03:08Z
Fyler:4135
Fyler:4300
UMLS:C4022810
Abnormal nervous system morphology
Abnormal shape of nervous system
human_phenotype
HP:0012639
Abnormality of nervous system morphology
peter
2014-02-15T01:33:13Z
https://www.ncbi.nlm.nih.gov/pubmed/18777476
https://www.ncbi.nlm.nih.gov/pubmed/23365482
MSH:D013575
MSH:D019462
SNOMEDCT_US:234167006
SNOMEDCT_US:398652001
SNOMEDCT_US:398665005
UMLS:C0042420
UMLS:C0340854
Vasovagal syncope affects all ages from infancy to old age though younger children may present initially with reflex anoxic seizures. A detailed history will usually identify triggers including prolonged standing, dehydration, change in posture and emotional upset.
Neurocardiogenic syncope
Reflex syncope
Situational syncope
human_phenotype
HP:0012668
Vasovagal syncope
true
true
Vasovagal syncope affects all ages from infancy to old age though younger children may present initially with reflex anoxic seizures. A detailed history will usually identify triggers including prolonged standing, dehydration, change in posture and emotional upset.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#vasovagal
Abnormal functionality of the gastrointestinal tract.
peter
2014-03-23T01:10:47Z
UMLS:C4022755
Functional abnormality of the GI tract
GI dysfunction
human_phenotype
HP:0012719
Functional abnormality of the gastrointestinal tract
Epilepsia partialis continua (also called Kojevnikov's or Kozhevnikov's epilepsia) is a type of focal motor status epilepticus characterized by repeated stereotyped simple motor manifestations such as jerks, typically of a limb or the face, recurring every few seconds or minutes for extended periods (days or years).
peter
2014-06-06T08:09:22Z
MSH:D017036
SNOMEDCT_US:241006
UMLS:C0085543
Epilepsia partialis continua refers to recurrent focal motor seizures (typically affecting hand and face, although other body parts may be affected), that occur every few seconds or minutes for extended periods (days or years). The focal motor features may exhibit a Jacksonian march. A Todd's paresis may be seen in the affected body part.
Epilepsia partialis continua of Kojevnikov
Kojevnikov's epilepsia
Kozhevnikov's epilepsia
human_phenotype
HP:0012847
The focal motor features may exhibit a Jacksonian march and a post-ictal (Todd's) paresis may be seen in the affected body part.
Epilepsia partialis continua
true
Epilepsia partialis continua refers to recurrent focal motor seizures (typically affecting hand and face, although other body parts may be affected), that occur every few seconds or minutes for extended periods (days or years). The focal motor features may exhibit a Jacksonian march. A Todd's paresis may be seen in the affected body part.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Seizures precipitated by exogenous stimuli.
robinp
2020-02-24T13:36:35Z
Included in 2001 ILAE Proposed Classification of Seizures. Seizures precipitated by fever, head injury, or alcohol withdrawal or anti-epileptic medication withdrawal are not provoked seizures.
Reflex seizure
A motor seizure is a type of seizure that is characterized at onset by involvement of the skeletal musculature. The motor event could consist of an increase (positive) or decrease (negative) in muscle contraction to produce a movement.
robinp
2020-02-24T14:20:36Z
This term describes the initial semiology of the seizure without specifying whether the onset is focal or generalized.
Motor seizure
A focal seizure characterized at onset by sudden loss or diminution of muscle tone without apparent preceding myoclonic or tonic activity, typically lasting more than 500 ms but less than 2 seconds. It may involve the head, trunk, jaw or limb musculature.
robinp
2020-02-24T14:54:22Z
https://www.ncbi.nlm.nih.gov/pubmed/20627778
Sudden loss or diminution of muscle tone without apparent preceding myoclonic or tonic activity, typically lasting >500 milliseconds but < 2 seconds. It may involve the head, trunk, jaw or limb musculature.
Localised atonic seizure
Localised hypotonic seizure
Localized atonic seizure
Localized hypotonic seizure
Partial atonic seizure
Partial hypotonic seizure
Segmental atonic seizure
Segmental hypotonic seizure
Focal atonic seizure
https://www.epilepsy.com/learn/types-seizures/atonic-seizures
true
true
true
Sudden loss or diminution of muscle tone without apparent preceding myoclonic or tonic activity, typically lasting >500 milliseconds but < 2 seconds. It may involve the head, trunk, jaw or limb musculature.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
2016-08-12T11:24:56Z
HPO:probinson
Abnormal vascular morphology
2016-08-27T13:44:32Z
HPO:probinson
Any anomaly of the digestive system, a collection of organs that is made up of the gastrointestinal tract and the liver, pancreas, and gallbladder. The gastrointestinal tract is a series of hollow organs joined in a long, twisting tube from the mouth to the anus, including the mouth, esophagus, stomach, small intestine, large intestine and anus.
Abnormality of the digestive system
A functional anomaly of the digestive system.
2016-08-27T13:58:05Z
HPO:probinson
Abnormality of digestive system physiology
Marked, involuntary jerking of the eyelids.
2016-10-28T05:55:32Z
HPO:probinson
https://www.ncbi.nlm.nih.gov/pubmed/6820630
Blepharoclonus
Eyelid myoclonia
Some literature refers to eyelid myoclonia as a disease entity (Jeavons syndrome) that is characterized by episodes of eyelid myoclonus with absences.
Eyelid myoclonus
true
true
A symptom or manifestation indicating a systemic or general effect of a disease and that may affect the general well-being or status of an individual.
2016-11-29T11:02:54Z
HPO:probinson
Note that we use the preferred term label constitutional symptom because this reflects common usage, but we do not restrict the term or its descendents to the narrow meaning of symptom, i.e., a complaint related by a patient to a physician. There is no generally accepted classification of what defines a constitutional symptom, but examples include weight loss, fatigue, general weakness, night sweats, shaking, chills, fever, and vomiting.
Constitutional symptom
Involuntary contraction or twitching of the muscles.
2016-11-29T11:13:35Z
HPO:probinson
https://www.ncbi.nlm.nih.gov/books/NBK1169/#adnfle.Clinical_Characteristics
Shivering
Shuddering
Shivering is a physiologic method of heat production in man and other mammals. Shivering is a bodily function in response to fever, early hypothermia or feeling cold.
Shivering
https://pdfs.semanticscholar.org/286d/427de14ed86a44160267f6a2c444afccf2a1.pdf
true
true
Ambulation or other complex motor behaviors after getting out of bed in a sleep-like state. During sleepwalking episodes, the sonambulating individual appears confused or dazed, the eyes are usually open, and he or she might mumble or give inappropriate answers to questions, or occasionally appear agitated.
2016-12-14T12:01:00Z
HPO:probinson
https://www.ncbi.nlm.nih.gov/books/NBK2609/
Sleep walking
During an episode of sleepwalking, the sonambulating child typically appears clumsy and might perform unusual actions such as urinating in a closet. Injuries can occur during sleepwalking, including falling downstairs or after leaving the house.
Somnambulism
http://www.case.edu/EpSO.owl#SleepWalking
true
Deep, noisy breathing during sleep accompanied by hoarse or harsh sounds caused by the vibration of respiratory structures (especially the soft palate) resulting in sound due to obstructed air movement during breathing while sleeping.
2016-12-18T13:24:58Z
HPO:probinson
https://www.ncbi.nlm.nih.gov/pubmed/22580903
Snore
Snores
Snoring symptoms
Snoring
http://www.case.edu/EpSO.owl#Snoring
true
A type of myoclonus in which the myoclonias shift from body region to another in a random and asynchronous fashion. Erratic myoclonus can affect the face or limbs, are brief, single or repetitive, very frequent and nearly continuous.
2017-02-17T12:01:58Z
HPO:probinson
https://www.ncbi.nlm.nih.gov/books/NBK2599/
Fragmentary myoclonus
Erratic may appear immediately after birth.Definition adapted from The Epilepsies: Seizures, Syndromes and Management; Chapter 5: Neonatal Seizures and Neonatal Syndromes; NCBI Book NBK2599.
Erratic myoclonus
true
Interictal refers to a period of time between epileptic seizures. Electroencephalographic (EEG) patterns are important in the differential diagnosis of epilepsy, and the EEG is almost always abnormal during a seizure. Some persons with seizures may show EEG abnormalities between seizures, while others do not. In some cases, multiple interictal EEGs must be recorded before an abnormality is observed. In most cases the electrographic pattern of seizure onset is completely different from the activity recorded during interictal discharge.
2017-03-15T13:25:46Z
HPO:probinson
interictal electroencephalographic abnormality
Interictal EEG abnormality
http://www.case.edu/EpSO.owl#InterIctalPattern
Any deviation from the normal range of concentration of a metabolite in the cerebrospinal fluid.
2017-05-05T10:24:32Z
HPO:probinson
Abnormal CSF metabolite level
A type of focal-onset seizure characterized by alterations in mood or emotion, or the appearance of altered emotion without the subjective emotion, at seizure onset. These emotional seizures may occur with or without objective clinical signs of a seizure evident to the observer.
2018-10-07T16:18:24Z
HPO:probinson
Focal emotional seizures are characterized by alterations in mood or emotion, or the appearance of altered emotion without the subjective emotion, at seizure onset. These emotional seizures may occur with or without objective clinical signs of a seizure evident to the observer.
emotional
Focal emotional seizure
true
Focal emotional seizures are characterized by alterations in mood or emotion, or the appearance of altered emotion without the subjective emotion, at seizure onset. These emotional seizures may occur with or without objective clinical signs of a seizure evident to the observer.
https://www.epilepsydiagnosis.org/seizure/emotional-overview.html
2019-04-08T22:41:54Z
HPO:probinson
Abscess
A collection of pus, immune cells, and other material in the brain.
MSH:D001922
SNOMEDCT_US:441806004
UMLS:C0006105
Brain abscess
cerebral abscess
Brain abscess usually results from a bacterial or fungal infection.
Brain abscess
http://www.case.edu/EpSO.owl#CerebralAbcess
UMLS:C4022597
Abnormality of CNS electrophysiology
Abnormality of central nervous system electrophysiology
Tiny, repetitive muscle contractions in the eyelids, causing the appearance of twitching.
UMLS:C4280682
Eyelid fluttering
Fasciculation of the eyelid
Muscle twitches in eye lid
Muscle twitches in eyelid
Twitching around eyes
Eyelid fasciculation
true
An anomaly of the muscular contractions that propel food though the gastrointestinal tract.
Abnormal GI motility
Abnormal gastrointestinal motility
An anomaly of the wave-like muscle contractions of the digestive tract.
Abnormal peristalsis
A chronic deviation from normal pressure in the systemic arterial system.
2017-04-18T13:55:40Z
robinp
Abnormal systemic BP
Abnormal systemic blood pressure
A maladaptive personality trait characterized by moderate or greater impairment in personality (self /interpersonal) functioning.
2017-09-17T16:30:45Z
peter
The emergence of the self in childhood and adolescence is based on experience and perception, which then becomes organized into identity, which organizes further experience and perception. Identity is related to the individual's selfsameness and continuity in time.
Impairment in personality functioning
There is inconclusive evidence to precisely define the duration of the seizure; however, based on current evidence an operational threshold of 10 minutes is appropriate as beyond this a seizure is likely to be more prolonged. The individual may or may not be aware or in coma.
2017-09-17T16:57:40Z
peter
Nonconvulsive status epilepticus
Status epilepticus without prominent motor symptoms
Any functional anomaly of the ear.
2017-12-18T00:20:24Z
peter
Abnormal ear physiology
An abnormality in voluntary or involuntary eyelid movements or their control.
2018-01-28T12:51:02Z
peter
Abnormal eyelid movement
Repetition of one's own words or phrases.
2018-04-28T22:45:49Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/22776676
Palilalia
true
true
A functional anomaly of the mouth (which is also known as the oral cavity).
2018-04-29T14:50:56Z
peter
The physiological functions of the mouth include salivary gland secretory function, mastication (chewing) and preparation of food for swallowing.
Abnormal oral physiology
Saccadic undershoot of upward saccadic eye movements, i.e., an upward saccadic eye movement that has less than the magnitude that would be required to gain fixation of the object.
2018-05-04T02:39:32Z
peter
upward rolling of the eyes
Hypometric upward saccades
http://www.efmny.org/epilepsy-101-know-the-facts/types-and-symptoms/
true
true
Any functional abnormality of the eyelid.
2018-05-06T15:39:56Z
peter
Abnormal eyelid physiology
A deviation from normal concentration of glucose content in the cerebrospinal fluid.
2018-05-13T13:54:21Z
peter
Abnormal CSF glucose level
Abnormally high glucose concentration in the cerebrospinal fluid.
2018-05-13T13:55:26Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/26088882
Increased CSF glucose
CSF glucose increased AE
Hyperglycorrhachia
true
An anomaly of the adjacent structures (i.e., adnexa) of the eye, defined as the lacrimal apparatus, the extraocular muscles and the eyelids, eyelashes, eyebrows and the conjunctiva.
2018-09-03T00:17:49Z
peter
Abnormality of the ocular adnexa
A functional anomaly of the adjacent structures (i.e., adnexa) of the eye, defined as the lacrimal apparatus, the extraocular muscles and the eyelids, eyelashes, eyebrows and the conjunctiva.
2018-09-03T00:18:45Z
peter
Abnormal ocular adnexa physiology
A type of malformation of cortical development that primarily affects areas of neocortex. It can be identified on conventional magnetic resonance imaging as focal cortical thickening, abnormal gyration, and blurring between gray and white matter, often associated with clusters of heterotopic neurons.
2018-09-16T10:55:37Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/22844307
Focal cortical dysplasias (FCD) are localized regions of malformed cerebral cortex. They are a common cause of focal seizures. They are classified by their neuropathological features.
Focal cortical dysplasia is one of the most common entities associated with refractory epilepsy, especially in childhood.
Focal cortical dysplasia
http://www.case.edu/EpSO.owl#FocalCorticalDysplasia
true
true
Focal cortical dysplasias (FCD) are localized regions of malformed cerebral cortex. They are a common cause of focal seizures. They are classified by their neuropathological features.
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A type of focal cortical dysplasia that is characterized by abnormal cortical layering.
2018-09-16T11:00:11Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type I refers to isolated lesions, which present either as radial (FCD Type Ia) or tangential (FCD Type Ib) dyslamination of the cortex, that may be identified in one or multiple lobes of the brain.
Focal cortical dysplasia type I
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeI
true
true
FCD Type I refers to isolated lesions, which present either as radial (FCD Type Ia) or tangential (FCD Type Ib) dyslamination of the cortex, that may be identified in one or multiple lobes of the brain.
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type I that is characterized by abnormal radial cortical lamination.
2018-09-16T11:03:23Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type I refers to isolated lesions, which present either as radial (FCD Type Ia) or tangential (FCD Type Ib) dyslamination of the cortex, that may be identified in one or multiple lobes of the brain.
FCD Type IA (Abnormal Radial Cortical Lamination)
Focal cortical dysplasia type Ia
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIA
true
true
FCD Type I refers to isolated lesions, which present either as radial (FCD Type Ia) or tangential (FCD Type Ib) dyslamination of the cortex, that may be identified in one or multiple lobes of the brain.
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type I that is characterized by abnormal tangential cortical lamination.
2018-09-16T11:05:32Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type I refers to isolated lesions, which present either as radial (FCD Type Ia) or tangential (FCD Type Ib) dyslamination of the cortex, that may be identified in one or multiple lobes of the brain.
FCD Type IB (Abnormal Tangential Cortical Lamination)
Focal cortical dysplasia type Ib
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIB
true
true
FCD Type I refers to isolated lesions, which present either as radial (FCD Type Ia) or tangential (FCD Type Ib) dyslamination of the cortex, that may be identified in one or multiple lobes of the brain.
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type I that is characterized by abnormal radial and tangential cortical lamination.
2018-09-16T11:06:34Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type IC (Abnormal Radial and Tangential Cortical Lamination)
Focal cortical dysplasia type Ic
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIC
true
A type of focal cortical dysplasia that is characterized by disrupted cortical lamination and specific cytological abnormalities.
2018-09-16T11:09:13Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type II is an isolated lesion characterized by cortical dyslamination and dysmorphic neurons without (Type IIa) or with balloon cells (Type IIb)
Focal cortical dysplasia type II
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeII
true
true
FCD Type II is an isolated lesion characterized by cortical dyslamination and dysmorphic neurons without (Type IIa) or with balloon cells (Type IIb)
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type II that is characterized by dysmorphic neurons, which present with a significantly enlarged cell body and nucleus, malorientation, abnormally distributed intracellular Nissl substance and cytoplasmic accumulation of neurofilament proteins.
2018-09-16T11:11:20Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type II is an isolated lesion characterized by cortical dyslamination and dysmorphic neurons without (Type IIa) or with balloon cells (Type IIb)
FCD Type IIA (Dysmorphic Neuron)
There are no balloon cells present (to be confirmed by immunohistochemistry). Discrimination of individual cortical layers is almost impossible (with the exception of Layer 1). Other cortical layer abnormalities are frequently encountered and should not be separately classified, including abnormal isocortical layer organization adjacent to the main lesion, as well as heterotopic neurons in Layer 1 or white matter.
Focal cortical dysplasia type IIa
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIIA
true
true
FCD Type II is an isolated lesion characterized by cortical dyslamination and dysmorphic neurons without (Type IIa) or with balloon cells (Type IIb)
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type II that is characterized by dysmorphic neurons (significantly enlarged with accumulation of neurofilament proteins) and balloon cells.
2018-09-16T11:12:48Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type II is an isolated lesion characterized by cortical dyslamination and dysmorphic neurons without (Type IIa) or with balloon cells (Type IIb)
FCD Type IIB (Dysmorphic Neurons and Balloon Cell)
Cortical lamination is frequently disrupted with the exception of Layer 1. The myelin content may also be altered in underlying subcortical white matter. Other cortical layer abnormalities are frequently encountered and should not be separately classified, including abnormal isocortical layer organization adjacent to the main lesion, as well as heterotopic neurons in Layer 1 or white matter. Histopathologically similar lesions are observed in cortical tubers and other gross MCDs, i.e. hemimegalencephaly or schizencephaly.
Focal cortical dysplasia type IIb
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIIB
true
true
FCD Type II is an isolated lesion characterized by cortical dyslamination and dysmorphic neurons without (Type IIa) or with balloon cells (Type IIb)
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A type of focal cortical dysplasia that is characterized by cortical lamination abnormalities associated with a principal lesion, usually adjacent to or affecting the same cortical area/lobe.
2018-09-16T11:15:25Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
Focal cortical dysplasia type III
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIII
true
true
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type III that is characterized by alterations in architectural organisation (cortical dyslamination) or cytoarchitectural composition (hypertrophic neurons outside Layer 5) in patients with hippocampal sclerosis (HS, syn. Ammon's horn sclerosis).
2018-09-16T11:16:43Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
FCD Type IIIA (Cortical Lamination Abnormality in the Temporal Lobe Associated with Hippocampal Sclerosis)
Focal cortical dysplasia type IIIa
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIIIA
true
true
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type III that is characterized by altered architectural (cortical dyslamination, hypoplasia without six-layered structure) and/or cytoarchitectural composition (hypertrophic neurons) of the neocortex, which occur adjacent to glial or glioneuronal tumor.
2018-09-16T11:18:31Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
FCD Type IIIB (Cortical Lamination Adjacent to a Glial or Glioneuronal Tumor)
This type of focal cortical dysplasia is associated with glial or glioneuronal tumors (Ganglioglioma, Dysembryoplastic Neuroepithelial Tumor (DNT, syn. DNET) or other epilepsy-associated neoplasms. It is important to exclude tumor infiltration in areas of cortical abnormalities before establishing the diagnosis of FCD. The etiology and pathogenesis of FCD Type IIIb remains to be determined, but is likely an acquired process.
Focal cortical dysplasia type IIIb
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIIIB
true
true
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type III that is characterized by alterations in architectural (cortical dyslamination, hypoplasia) or cytoarchitectural composition of the neocortex (hypertrophic neurons), which occur adjacent to vascular malformations (cavernomas, arteriovenous malformations, leptomeningeal vascular malformations, telangiectasias, meningioangiomatosis).
2018-09-16T11:23:39Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
FCD Type IIIC (Cortical Lamination Adjacent to Vascular Malformation)
Focal cortical dysplasia type IIIc
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIIIC
true
true
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
A subtype of focal cortical dysplasia type III that is characterized by altered architectural (cortical dyslamination, hypoplasia without six-layered structure) or cytoarchitectural composition (hypertrophic neurons) of the neocortex, which occur adjacent to other lesions acquired during early life (not included into FCD Type IIIa-c). These lesions comprise a large spectrum including traumatic brain injury, glial scarring after prenatal or perinatal ischemic injury or bleeding, and inflammatory or infectious diseases, i.e. Rasmussen encephalitis, limbic encephalitis, bacterial or viral infections.
2018-09-16T11:25:19Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/31085954
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
FCD Type IIID (Cortical Lamination Abnormality Adjacent to Any Other Lesion Acquired During Early Life)
Focal cortical dysplasia type IIId
http://www.case.edu/EpSO.owl#FocalCorticalDysplasiaTypeIIID
true
true
FCD Type III describes FCD that occurs in combination with hippocampal sclerosis (FCD Type IIIa), with glioneuronal tumors (FCD Type IIIb), adjacent to vascular malformations (FCD Type IIIc) or in association with lesions acquired in early life, such as a previous ischemic injury (FCD Type IIId).
https://www.epilepsydiagnosis.org/aetiology/focal-cortical-dysplasia-overview.html
An abnormal level of an analyte measured in the blood.
2019-01-12T13:45:59Z
peter
Abnormal circulating metabolite concentration
2019-01-27T16:44:33Z
peter
Abnormal immune system morphology
A compact, organized collection of mature mononuclear phagocytes, which may be but is not necessarily accompanied by accessory features such as necrosis.
2019-01-27T16:44:42Z
peter
https://www.ncbi.nlm.nih.gov/pubmed/30711777
Granulomas
Granulomas vary considerably in their degree of complexity, physical size and organization. Not surprisingly, their classification has attracted much attention, and a numbers of schemes have been described. The cornerstone of the granulomatous response, however, is the predominant involvement of mononuclear phagocytes. As granulomas develop, tissue-resident, as well as inflammatory mononuclear phagocytes become intimately acquainted, and these cells may develop highly differentiated epithelioid cell characteristics. In many cases, elegant multinucleate populations can be seen, distinct from the syncytia formed after viral infection as evident by their extended life-span. Accumulating lymphocytes, mainly T cells, contribute to the developing microarchitecture of the granuloma, often with characteristic patterns of subset organization relative to the core of mononuclear phagocytes and to each other. B lymphocytes, plasma cells, NK cells and neutrophils may all be present, though a relative paucity of neutrophils delineates these sites of inflammation from those associated with necrosis. At its extreme, the granuloma may serve as the focus for irreversible fibrotic reactions, but, even in less dramatic cases, a substantive degree of local tissue remodelling occurs.
Granuloma
http://www.case.edu/EpSO.owl#Granulomas
true
Information about close relatives of an individual who is the proband of a study or who is being investigated with the goal of identifying a medical diagnosis. Usually, the family history includes information from three generations of relatives, including children, brothers and sisters, parents, aunts and uncles, nieces and nephews, grandparents, and cousins.
2019-02-14T11:40:50Z
peter
This subontology is intended to help record summary information about family members if only a limited amount of information is available or required.
Family history
https://www.webmd.com/epilepsy/epilepsy-common-causes#1
true
true
Status epilepticus with prominent motor signs during the prolonged seizure.
peter
Status epilepticus with prominent motor symptoms
A type of status epilepticus without prominent motor symptoms and in the presence of coma.
peter
https://www.ncbi.nlm.nih.gov/pubmed/19744116
Subtle status epilepticus
This includes the entity subtle status epilepticus proposed by some authors as the late, burned-out stage of generalized convulsive status epilepticus characterized by (subtle rather than predominant) focal or multifocal myoclonic movements, coma, and pseudoperiodic epileptiform discharges against a slow low-voltage background on EEG.
Non-convulsive status epilepticus with coma
true
A type of status epilepticus characterized by a prolonged bilateral tonic-clonic seizure, or repeated bilateral tonic-clonic seizures without recovery between.
comment:
source:
seeAlso: Tonic-clonic status epilepticus
peter
Tonic-clonic status epilepticus
In 2015, the ILAE Task Force on Classification of Status Epilepticus did proposed that time t1 (indicating the time that emergency treatment should be started because the seizure is unlikely to terminate spontaneously) is 5 minutes and t2 (the time at which long-term consequences of the seizure may be expected) is 30 minutes for convulsive (tonic-clonic) status epilepticus.This 5-minute timeframe has been endorsed by the 2012 Neurocritical Care Society Guidelines and the 2016 American Epilepsy Society Guidelines to guide when emergent treatment for convulsive status epilepticus should start. This term includes convulsive status epilepticus of focal, generalized or unknown onset.
Convulsive status epilepticus
A type of bilateral convulsive seizure of generalized onset that is sufficiently prolonged (or repeated without recovery) to reach the threshold for status epilepticus.
peter
https://www.ncbi.nlm.nih.gov/pubmed/26336950
Generalised convulsive status epilepticus
Generalized convulsive status epilepticus
true
A type of bilateral convulsive seizure of focal onset (which could be with awareness or impaired awareness, either motor or non- motor) that is sufficiently prolonged (or repeated without recovery) to reach the threshold for status epilepticus.
peter
https://www.ncbi.nlm.nih.gov/pubmed/26920416
Focal onset seizure evolving into bilateral convulsive status epilepticus
Focal-onset seizure evolving into generalized convulsive status epilepticus
Partial onset seizure evolving into convulsive status epilepticus
Partial-onset seizure evolving into convulsive status epilepticus
Secondarily generalised tonic-clonic status epilepticus
Secondarily generalized convulsive status epilepticus
Secondarily generalized tonic-clonic status epilepticus
Focal-onset seizure evolving into bilateral convulsive status epilepticus
true
Status epilepticus with focal motor signs originating within networks limited to one hemisphere. Involves musculature in any form. The motor event could consist of an increase (positive) or decrease (negative) in muscle contraction to produce a movement.
peter
https://www.ncbi.nlm.nih.gov/pubmed/24977129
Including aware and unaware focal motor status epilepticus, but note that hyperkinetic status epilepticus (of focal onset) is classified separately.
Focal motor status epilepticus
true
Status epilepticus characterized by continuous hyperkinetic proximal limb or axial muscles producing irregular sequential ballistic movements such as pedaling pelvic thrusting, thrashing, or rocking movements.
peter
https://www.ncbi.nlm.nih.gov/pubmed/26336950
In 2015 the ILAE classified hyperkinetic status epilepticus separately from focal motor status epilepticus characterized by elemental motor features. Awareness may be intact or impaired.
Hyperkinetic status epilepticus
true
A type of motor status epilepticus with repeating bilateral sudden brief (less than 100 ms) involuntary single or multiple contraction of muscles or muscle groups of variable topography.
peter
https://www.ncbi.nlm.nih.gov/pubmed/26336950
The myoclonic seizures are usually generalized. The duration or frequency of myoclonic jerks required to qualify as myoclonic status is not defined, but they should occur frequently and long enough to significantly impair functioning. A reasonable general definition might be that myoclonus must occur either (1) at least once every 10 seconds for longer than 10 minutes or (2) at least once a minute for longer than 30 minutes.
Myoclonic status epilepticus
true
Tonic status epilepticus is a type of status epilepticus characterized by focal or bilateral limb stiffening or elevation, which may be electrographically generalized or focal.
peter
https://www.ncbi.nlm.nih.gov/pubmed/26336950
This has most commonly been reported in children with neurocognitive impairment and severe epilepsy, such as Ohtahara syndrome or West syndrome and Lennox-Gastaut syndrome. The tonic activity can be a sustained abnormal posture, either in extension or flexion, sometimes accompanied by tremor of the extremities.
Tonic status epilepticus
true
A type of status epilepticus without prominent motor symptoms in the absence of coma.
peter
Non-convulsive status epilepticus without coma
Focal non-convulsive status epilepticus without coma is a type of status epilepticus without prominent motor signs, which is electrographically focal. It is a prolonged focal non-motor seizure.
peter
https://www.ncbi.nlm.nih.gov/pubmed/26336950
focal non-convulsive status epilepticus without impairment of consciousness
Semiology may include autonomic, sensory, visual, olfactory, gustatory, emotional/psychic/experiential, or cognitive symptoms. Consciousness or awareness may be intact or impaired.
Focal non-convulsive status epilepticus without coma
true
Any deviation from the normal circulating creatine kinase concentration.
HPO:skoehler
UMLS:C4022449
Abnormal circulating CK concentration
Abnormal circulating CPK concentration
Abnormal circulation phospho-CK concentration
Abnormal levels of creatine kinase in blood
Abnormal circulating creatine kinase concentration
An early onset of puberty, in this case early does not refer to precocious.
doelkens
2010-05-04T10:35:02Z
UMLS:C4022392
Early onset of sexual maturation
human_phenotype
HP:0100000
Early onset of sexual maturation
An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements.
doelkens
2010-05-28T11:48:50Z
HP:0001294
MSH:D009069
SNOMEDCT_US:60342002
UMLS:C0026650
Abnormality of movement
Movement disorder
Unusual movement
human_phenotype
HP:0100022
Movement disorders are characterized by the phenotypic abnormalities including abnormal involuntary movements, akathisia, akinesia, athetosis, ataxia, ballismus, bradykinesia, chorea, dyskinesia, dystonia, and myoclonus tics, tremor, spasms, and stereotypy.
Abnormality of movement
Repeated, individually recognizable, intermittent movements or movement fragments that are almost always briefly suppresable and are usually associated with awareness of an urge to perform the movement.
doelkens
2010-06-10T12:10:29Z
https://www.ncbi.nlm.nih.gov/books/NBK2609/
https://www.ncbi.nlm.nih.gov/pubmed/29791879
UMLS:C2169806
Tics are involuntary, sudden, rapid, repetitive, non-rhythmic, simple or complex movements or vocalizations. Simple motor tics involve a single muscle or group of muscles (including ocular muscles) and may be misdiagnosed as myoclonic seizures. Complex motor tics involve a cluster of simple actions or coordinated sequence of movements that may be purposeful or non-purposeful and may be misdiagnosed as focal impaired awareness seizures, particularly in individuals with learning disability and / or communication problems. Tics are common in childhood and have a tendency to wax and wane in frequency over time. An urge or compulsion to perform the tic, and an ability to suppress the tic (to some degree) are important features on history that support the events being tics.
Tic disorder
Tics
human_phenotype
HP:0100033
Tics can be invisible to the observer, such as abdominal tensing or toe crunching. Common motor and phonic tics are, respectively, eye blinking and throat clearing. Movements of other movement disorders (for example, chorea, dystonia, myoclonus) must be distinguished from tics. Other conditions, such as autism and stereotypic movement disorder, also include movements which may be confused with tics. Tics must also be distinguished from the compulsions of OCD and from seizure activity. Tics may increase as a result of stress, fatigue, boredom, or high-energy emotions, which can include negative emotions, such as anxiety, but positive emotions as well, such as excitement or anticipation. Relaxation may result in a tic increase (for instance, watching television or using a computer), while concentration on an absorbing activity often leads to a decrease in tics.
Tics
true
true
Tics are involuntary, sudden, rapid, repetitive, non-rhythmic, simple or complex movements or vocalizations. Simple motor tics involve a single muscle or group of muscles (including ocular muscles) and may be misdiagnosed as myoclonic seizures. Complex motor tics involve a cluster of simple actions or coordinated sequence of movements that may be purposeful or non-purposeful and may be misdiagnosed as focal impaired awareness seizures, particularly in individuals with learning disability and / or communication problems. Tics are common in childhood and have a tendency to wax and wane in frequency over time. An urge or compulsion to perform the tic, and an ability to suppress the tic (to some degree) are important features on history that support the events being tics.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#tics
An abnormality of the structure or form of the tendons, also often called sinews.
doelkens
2010-07-20T01:20:19Z
UMLS:C4021026
Abnormal shape of tendon
Abnormality of the sinew
human_phenotype
HP:0100261
A tendon (or sinew) is a tough band of fibrous connective tissue that usually connects muscle to bone and is capable of withstanding tension. Tendons are similar to ligaments and fascia as they are all made of collagen except that ligaments join one bone to another bone, and fascia connect muscles to other muscles. Tendons and muscles work together and can only exert a pulling force.
Abnormal tendon morphology
Hemorrhage occurring between the dura mater and the skull.
doelkens
2010-08-10T03:05:35Z
https://www.ncbi.nlm.nih.gov/pubmed/7469854
MSH:D006407
SNOMEDCT_US:428268007
SNOMEDCT_US:82999001
UMLS:C0238154
Epidural haematoma
Epidural haemorrhage
Epidural hematoma
Extradural haematoma
Extradural hematoma
human_phenotype
HP:0100310
Intracranial bleeding occuring between the dura mater (the tough outer membrane of the central nervous system) and the skull. The dura mater also covers the spine, so epidural bleeds may also occur in the spinal column.
Epidural hemorrhage
true
Abnormality in the process of thought including the ability to process information.
doelkens
2010-12-20T06:50:32Z
HP:0002128
HP:0002129
HP:0002302
HP:0002337
HP:0002441
HP:0006972
HP:0006998
HP:0007211
https://www.ncbi.nlm.nih.gov/pubmed/25905906
MSH:D060825
SNOMEDCT_US:386806002
UMLS:C0338656
UMLS:C0683322
Abnormality of cognition
Cognitive abnormality
Cognitive defects
Cognitive deficits
Cognitive impairment
Intellectual impairment
Mental impairment
human_phenotype
HP:0100543
Cognitive impairment
true
true
A transient visual disturbance that is typically caused by a circulatory, ocular or neurological underlying condition.
doelkens
2010-12-27T12:42:59Z
https://www.ncbi.nlm.nih.gov/pubmed/28488762
MSH:D020757
SNOMEDCT_US:88032003
UMLS:C0149793
Amaurosis
human_phenotype
HP:0100576
Amaurosis fugax
true
true
doelkens
2010-12-30T11:39:15Z
UMLS:C4022001
Abnormality of the cerebral blood vessels
human_phenotype
HP:0100659
Abnormality of the cerebral vasculature
doelkens
2011-06-07T10:01:04Z
UMLS:C4021978
Abnormal spit
Abnormality of salivation
human_phenotype
HP:0100755
Abnormality of salivation
Excessively active peristalsis (wave of contraction of the tubular organs of the gastrointestinal tract) marked by excessive rapidity of the passage of food through the stomach and intestine.
doelkens
2011-06-07T11:53:08Z
Stomach churning
SNOMEDCT_US:271838002
SNOMEDCT_US:80306002
UMLS:C0232474
UMLS:C0857071
Increased abdominal peristals
human_phenotype
Increased Abdominal Peristals
HP:0100770
Hyperperistalsis
true
Reduced or inadequate peristalsis, with resultant slow passage of contents through the digestive tract.
doelkens
2011-06-07T11:53:08Z
SNOMEDCT_US:77853002
UMLS:C0232475
UMLS:C4020700
decresed abdominal peristalsis
human_phenotype
Decreased Abdominal Peristalsis
Intestinal hypoperistalsis
HP:0100771
Hypoperistalsis
true
Deposits of various size, shape, consistency, refractive index, and motility within the eye's vitreous humour, which is normally transparent.
doelkens
2011-06-09T05:58:09Z
SNOMEDCT_US:15013002
SNOMEDCT_US:162278001
SNOMEDCT_US:420999000
UMLS:C0016242
UMLS:C1720491
Eye floaters
Flitting flies
Mouches volantes
Myodeopsia
Myodesopsia
Spots in front of eyes
Vitreous condensations
Vitreous debris
Vitreous opacities
Vitreous veils
human_phenotype
Spots
HP:0100832
Vitreous floaters are described as vitreous condensations (or vitreous debris or vitreous opacities) as a finding upon ophthalmological examination. Floaters can take many forms from little dots, circles, lines, to clouds or cobwebs. The floaters are created by a shadow of the floating vitreal debris that is projected onto the retina, which is described as a veil.
Vitreous floaters
true
An abnormality of the partial pressure of oxygen in the arterial blood.
2018-10-17T15:14:35Z
Abnormal blood O2 level
Abnormal blood oxygen levels
Abnromal O2 blood concentration
Abnormal blood oxygen level
A loss of consciousness followed by stiffening and brief clonic movements affecting some or all limbs, often misinterpreted as an epileptic seizure.
2018-11-20T13:57:33Z
https://www.ncbi.nlm.nih.gov/books/NBK2609/
Reflex anoxic seizures or reflex asystolic syncope occurs from early infancy onwards, either remitting pre-school age or evolving into vasovagal syncope. Alternative names include pallid breath holding and pallid syncope. In these events an unpleasant, typically sudden stimulus such as a bump, knock on the head, cut or abrasion leads to a profound vagal discharge with a dramatic drop in the heart rate and transient asystole. These events are not due to temper tantrums. The child may cry very briefly or let out a couple of grunts and then becomes exceedingly pale and loses consciousness. Decerebrate posturing with extensor stiffening may mimic a tonic seizure and be followed by flexor spasms and irregular tonic-clonic movements however the whole sequence of abnormal movements will just last a few seconds. Recovery of consciousness may be rapid but some children may sleep for hours after an event. The events appear very frightening for carers but have a good prognosis. When reflex anoxic seizures are very frequent, atropine or cardiac pacing may be considered. There is an uncommon situation in which an anoxic seizure may trigger a secondary prolonged tonic-clonic seizure; the anoxic-epileptic seizure. The two phases of the event can be distinguished by a careful history, as in most events individuals will have syncope without the epileptic component
Reflex anoxic seizure
Reflex anoxic seizures
Reflex asystolic syncope
true
true
Reflex anoxic seizures or reflex asystolic syncope occurs from early infancy onwards, either remitting pre-school age or evolving into vasovagal syncope. Alternative names include pallid breath holding and pallid syncope. In these events an unpleasant, typically sudden stimulus such as a bump, knock on the head, cut or abrasion leads to a profound vagal discharge with a dramatic drop in the heart rate and transient asystole. These events are not due to temper tantrums. The child may cry very briefly or let out a couple of grunts and then becomes exceedingly pale and loses consciousness. Decerebrate posturing with extensor stiffening may mimic a tonic seizure and be followed by flexor spasms and irregular tonic-clonic movements however the whole sequence of abnormal movements will just last a few seconds. Recovery of consciousness may be rapid but some children may sleep for hours after an event. The events appear very frightening for carers but have a good prognosis. When reflex anoxic seizures are very frequent, atropine or cardiac pacing may be considered. There is an uncommon situation in which an anoxic seizure may trigger a secondary prolonged tonic-clonic seizure; the anoxic-epileptic seizure. The two phases of the event can be distinguished by a careful history, as in most events individuals will have syncope without the epileptic component
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#reflex-anoxic
data item
Data items include counts of things, analyte concentrations, and statistical summaries.
a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
JAR: datum -- well, this will be very tricky to define, but maybe some
information-like stuff that might be put into a computer and that is
meant, by someone, to denote and/or to be interpreted by some
process... I would include lists, tables, sentences... I think I might
defer to Barry, or to Brian Cantwell Smith
JAR: A data item is an approximately justified approximately true approximate belief
PERSON: Alan Ruttenberg
PERSON: Chris Stoeckert
PERSON: Jonathan Rees
data
data item
information content entity
Examples of information content entites include journal articles, data, graphical layouts, and graphs.
A generically dependent continuant that is about some thing.
An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity
2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).
Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
PERSON: Chris Stoeckert
OBI_0000142
information content entity
measurement datum
Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.
A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.
2/2/2009 is_specified_output of some assay?
person:Chris Stoeckert
OBI_0000305
group:OBI
measurement datum
A part of an extended organism that itself has as part a population of one or more infectious agents and that (1) exists as a result of processes initiated by members of the infectious agent population and is (2) clinically abnormal in virtue of the presence of this infectious agent population, or (3) has a disposition to bring clinical abnormality to immunocompetent organisms of the same Species as the host (the organism corresponding to the extended organism) through transmission of a member or offspring of a member of the infectious agent population.
Albert Goldfain
Alexander Diehl
Lindsay Cowell
https://www.ncbi.nlm.nih.gov/pubmed/26423537
The organism corresponding to the extended organism is host to the infectious agents. By this definition, parts of the host can be considered part of the infection.
infection
http://www.case.edu/EpSO.owl#Infection
true
An emotion process is a complex mental process that is a synchronized aggregate of constituent mental processes including an appraisal process as part, and which gives rise to an action tendency.
occurrent emotion
short-term emotion
emotion process
true
Anger is a negative emotion, characterised by feelings of unpleasantness and high arousal, in the form of antagonistic feelings and action tendencies. [Source: OCEAS]
colère
ira
wut
angry
anger
true
enraged
violent and uncontrolled anger
rage
https://www.epilepsy.com/connect/forums/family-friends/epilepsy-and-rage-episodes
true
true
violent and uncontrolled anger
https://www.merriam-webster.com/dictionary/rage
An activated, aversive emotion that motivates attempts to cope with events that provide threats to the survival or well-being of organisms. Characterised by feelings of threat and impending doom, and by an urge to get out of the situation. [Source: OCEAS]
angst
miedo
peur
afraid
fear
true
terrified
A state of intense or overwhelming fear
terror
https://www.epilepsy.com/connect/forums/living-epilepsy-adults/feelings-terror-seizures
true
true
A state of intense or overwhelming fear
https://www.merriam-webster.com/dictionary/terror
A pleasant, positive emotion which arises in safe and familiar circumstances, when people have made progress towards important personal goals, especially when the progress is better than expected. [Source: OCEAS]
freude
gozo
joie
joyful
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4756129/
joy
true
true
A positive emotion which is experienced in reaction to a positive experience or event. [Source: OCEAS]
bonheur
felicidad
glück
happy
happiness
A negative emotion felt when an event is appraised as unpleasant, obstructive to one's goals and concerns, and one feels unable to cope with it or modify it. [Source: OCEAS]
trauer
tristesse
tristeza
sad
sadness
https://www.epilepsy.org.uk/info/depression
true
true
An affective process is any process that has positive or negative valence.
affective process
http://www.jbiomedsem.com/content/1/1/10
A mental illness can be defined as a health condition that changes a person's thinking, feelings, or behavior (or all three) and that causes the person distress and difficulty in functioning.
pathological mental process
A mental illness can be defined as a health condition that changes a person's thinking, feelings, or behavior (or all three) and that causes the person distress and difficulty in functioning.
https://www.ncbi.nlm.nih.gov/books/NBK20369/
Erroneous beliefs that usually involve a misinterpretation of perceptions or experiences. (their content may include a variety of themes (e.g., persecutory, referential, somatic, religious, or grandiose).
DSM-IV-TR (american Psychiatric Association)
https://www.ncbi.nlm.nih.gov/pubmed/30473971
delusion
true
The recurrence of a memory, feeling, or perceptual experience from the past.
DSM-IV-TR (american Psychiatric Association)
flashback
https://link.springer.com/content/pdf/10.1684/epd.2013.0550.pdf
true
true
A disruption in the usually integrated functions of consciousness, memory, identity, or perception of the environment.
The disturbance may be sudden or gradual, transient or chronic.
DSM-IV-TR (american Psychiatric Association)
https://www.ncbi.nlm.nih.gov/pubmed/9579937
dissociation
true
A state of unresponsiveness with immobility and mutism.
DSM-IV-TR (american Psychiatric Association)
https://www.ncbi.nlm.nih.gov/pubmed/16650147
stupor
true
true
Period of intense fear or apprehension that are of sudden onset and of variable duration from minutes to hours.
http://en.wikipedia.org/wiki/Panic_attack
Panic or anxiety attacks are brief episodes, each lasting several minutes, which can recur. A sudden feeling of apprehension, fear or terror is accompanied by symptoms including breathlessness (with hyperventilation), choking sensation, palpitations, chest pain, paraesthesia (typically perioral and in the hands), dizziness, sweating, trembling and feeling faint or loss of consciousness. It may not be easy to identify a precipitant. Fear may be a manifestation of focal seizures therefore ictal EEG may be required to make a correct diagnosis.
Panic
panic attack
true
true
Panic or anxiety attacks are brief episodes, each lasting several minutes, which can recur. A sudden feeling of apprehension, fear or terror is accompanied by symptoms including breathlessness (with hyperventilation), choking sensation, palpitations, chest pain, paraesthesia (typically perioral and in the hands), dizziness, sweating, trembling and feeling faint or loss of consciousness. It may not be easy to identify a precipitant. Fear may be a manifestation of focal seizures therefore ictal EEG may be required to make a correct diagnosis.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#panic-attacks
Symptom or feature of mental illness typically characterized by radical changes in personality, impaired functioning, and a distorted or nonexistent sense of objective reality.
psychosis
https://www.epilepsy.com/learn/challenges-epilepsy/moods-and-behavior/mood-and-behavior-101/psychosis
true
true
Is defined as the inability to experience pleasure from activities usually found enjoyable, e.g. exercise, hobbies, music, sexual activities or social interactions.
http://en.wikipedia.org/wiki/Anhedonia
anhedonia
true
Absence, poverty, or loss of control of voluntary muscle movements.
http://medical-dictionary.thefreedictionary.com/akinesia
akinesia
true
Feeling of emotional and mental discomfort as a symptom of discontentment, restlessness, dissatisfaction, malaise, depression, anxiety or indifference.
http://en.wikipedia.org/wiki/Dysphoria
Displeasure
dysphoria
https://www.frontiersin.org/10.3389/conf.fnhum.2012.210.00006/event_abstract
true
true
Refers to disorganized thinking as evidenced by disorganized speech.
formal thought disorder (FTD)
https://www.ncbi.nlm.nih.gov/pubmed/9291731
Specific thought disorders include derailment, poverty of speech, tangentiality, illogicality, perseveration, neologism, and thought blocking.
http://en.wikipedia.org/wiki/Thought_disorder
thought disorder (TD)
true
A mental process that creates, modifies or has as participant some cognitive representation.
cognitive process
a mental process that involves the manipulation of mental language and/or mental images
act of thinking
thinking
https://www.epilepsy.com/learn/challenges-epilepsy/thinking-and-memory
true
true
a mental process which is a) produced by a causal process (for example involving light rays or air vibrations) involving a part of the environment of the organism, and b) is experienced by the organism as being so caused, and c) in
which the relevant part of the environment is thereby represented to the organism
perception
true
A mental process is a bodily process that is of a type such that it can of itself be conscious. Examples include thinking, feeling pain, remembering and emotion as occurrent experiences.
A bodily process which brings into being, sustains or modifies a cognitive representation or a beahvior inducing state.
mental process
A mental disposition is a bodily disposition that is realized in a mental process.
mental disposition
Short-term detachment from one's immediate surroundings, during which a person's contact with reality is blurred and partially substituted by a visionary fantasy, especially one of happy, pleasant thoughts, hopes or ambitions, imagined as coming to pass, and experienced while awake.
act of daydreaming
http://en.wikipedia.org/wiki/Daydream
https://www.ncbi.nlm.nih.gov/pubmed/29791879
Daydreaming /inattention is common in childhood and events are frequently misdiagnosed as absence seizures. Daydreams are often situational (seen more frequently at times when the child is tired or relaxed or bored) and are longer than absences. Daydreams manifest as the child staring forward blankly, whilst motionless and not responding to those around them. There is usually no loss of body tone in a daydream and eyelid flickering does not occur. A daydream may be aborted by measures to attract the child's attention from the daydream, whereas a child cannot be distracted out of an absence seizure. Broadly stereotyped motor behaviors may accompany the daydream, particularly in children with learning disability and autistic features. Daydreams are often more pronounced in children with attention and learning difficulties.
daydreaming/inattention
daydreaming
true
true
Daydreaming /inattention is common in childhood and events are frequently misdiagnosed as absence seizures. Daydreams are often situational (seen more frequently at times when the child is tired or relaxed or bored) and are longer than absences. Daydreams manifest as the child staring forward blankly, whilst motionless and not responding to those around them. There is usually no loss of body tone in a daydream and eyelid flickering does not occur. A daydream may be aborted by measures to attract the child's attention from the daydream, whereas a child cannot be distracted out of an absence seizure. Broadly stereotyped motor behaviors may accompany the daydream, particularly in children with learning disability and autistic features. Daydreams are often more pronounced in children with attention and learning difficulties.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#daydreaming
A technique which uses the visualization of deep structures of the body by recording the reflections of pulses of ultrasonic waves directed into the tissues.
measurement_method_ontology
MMO:0000024
ultrasound method
true
Any method to determine the nature, properties, or composition of urine, the fluid waste product excreted by the kidneys, including measurement of the volume of urine or of the quantity or quality of component parts of urine.
mshimoyama
2010-09-01T09:58:30Z
https://www.ncbi.nlm.nih.gov/pubmed/26167207
measurement_method_ontology
urinalysis
MMO:0000147
urine analysis
true
A method which assesses the amount, proportions or properties of one or more electrolytes, any of various ions required by cells to regulate the electric charge and flow of water molecules across the cell membrane, in urine, the fluid waste product excreted by the kidneys.
JSmith
2013-11-13T11:01:51Z
measurement_method_ontology
MMO:0000433
urine electrolyte analysis
A method which assesses the amount, proportions or properties of sodium in urine, the fluid waste product excreted by the kidneys. Sodium, the chemical element with atomic number 11 that in its ionic form has lost one electron, forming a cation with a charge of +1, is the chief cation of extracellular body fluids.
JSmith
2013-11-13T11:19:45Z
https://www.ncbi.nlm.nih.gov/pubmed/31911412
urine sodium ion analysis
measurement_method_ontology
urine Na+ analysis
MMO:0000434
urine sodium analysis
true
A method which assesses the amount, proportions or properties of potassium in urine, the fluid waste product excreted by the kidneys. Potassium, the chemical element with atomic number 19 that in its ionic form has lost one electron, forming a cation with a charge of +1, is the chief cation of intracellular fluid.
JSmith
2013-11-13T11:19:49Z
urine potassium ion analysis
measurement_method_ontology
urine K+ analysis
MMO:0000435
urine potassium analysis
DC:0000690
OMIMPS:606777
The predominant seizure type in this metabolic disorder is absence seizures; myoclonic seizures and focal seizures are also seen. Around 10% of patients with early onset absence seizures and 5% of patients with epilepsy with myoclonic-atonic seizures have GLUT1 deficiency. A strong clue is the presence of paroxysmal exercise-induced dyskinesia in family members (or in the affected individual), which may be worse in the morning or after a period of fasting and relieved by carbohydrate. The ketogenic diet is the treatment of choice for GLUT1 deficiency and may result in seizure control and potentially improve cognitive outcome. Diagnosis may be suspected if a reduced CSF-blood glucose ratio (< 0.46) is found. The diagnosis can be confirmed by looking for reduced glucose transport across the erythrocyte membrane (which carries the same glucose transporter), and by mutation analysis of the solute carrier family 2, facilitated glucose transporter member 1 (SLC2A1) gene.
MONDO:0000188
Editor note: todo http://identifiers.org/hgnc/11005
GLUT1 deficiency syndrome
true
The predominant seizure type in this metabolic disorder is absence seizures; myoclonic seizures and focal seizures are also seen. Around 10% of patients with early onset absence seizures and 5% of patients with epilepsy with myoclonic-atonic seizures have GLUT1 deficiency. A strong clue is the presence of paroxysmal exercise-induced dyskinesia in family members (or in the affected individual), which may be worse in the morning or after a period of fasting and relieved by carbohydrate. The ketogenic diet is the treatment of choice for GLUT1 deficiency and may result in seizure control and potentially improve cognitive outcome. Diagnosis may be suspected if a reduced CSF-blood glucose ratio (< 0.46) is found. The diagnosis can be confirmed by looking for reduced glucose transport across the erythrocyte membrane (which carries the same glucose transporter), and by mutation analysis of the solute carrier family 2, facilitated glucose transporter member 1 (SLC2A1) gene.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#glucose
Creatine deficiency syndrome (CDS) comprises a group of inborn errors of creatine metabolism, characterized by a global developmental delay, intellectual disability and associated neurological (seizures, movement disorders, myopathy) and behavioral manifestions. CDS includes two creatine biosynthesis disorders; guanidinoacetate methyltransferase deficiency and L- Arginine: glycine amidinotransferase deficiency, as well as X-linked creatine transporter deficiency.
https://www.ncbi.nlm.nih.gov/pubmed/23534590
DOID:0050798
ICD10:E72.8
OMIMPS:300352
Orphanet:79172
UMLS:CN227588
Disorders of creatine metabolism comprise three different defects: impaired creatine transport into the brain in the X-linked creatine transporter defect and impaired creatine synthesis in GAMT (guanidinoacetate methyltransferase) and AGAT (arginineglycine amidinotransferase) deficiencies. Only GAMT deficiency is regularly associated with epilepsy, which is often refractory to conventional treatment. Creatine supplementation alone frequently leads to improvement. Several seizure types may occur. Infants can present with West syndrome. Atypical absences, atonic and generalized tonic-clonic seizures are common later in childhood.
CCDS
CDS
cerebral creatine deficiency syndrome
creatine deficiency syndrome
MONDO:0000456
cerebral creatine deficiency syndrome
true
true
Disorders of creatine metabolism comprise three different defects: impaired creatine transport into the brain in the X-linked creatine transporter defect and impaired creatine synthesis in GAMT (guanidinoacetate methyltransferase) and AGAT (arginineglycine amidinotransferase) deficiencies. Only GAMT deficiency is regularly associated with epilepsy, which is often refractory to conventional treatment. Creatine supplementation alone frequently leads to improvement. Several seizure types may occur. Infants can present with West syndrome. Atypical absences, atonic and generalized tonic-clonic seizures are common later in childhood.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html
Any abnormality, anatomical or biochemical, evident at birth or during the neonatal period.
https://www.ncbi.nlm.nih.gov/pubmed/25777785
DOID:0080015
EFO:0003915
ICD10:Q00.Q99
ICD9:759.89
ICD9:759.9
MESH:D000013
NCIT:C2849
SCTID:276654001
UMLS:CN232116
SCONG
birth defect
congenital Abnormality
congenital abnormality
congenital anatomic Abnormality
congenital anatomical Abnormality
congenital anomalies of fetus
congenital anomaly
congenital anomaly or birth defect
congenital defect
congenital defect/deformity
congenital deformity
congenital malformation
congenital malformations
defect/deformity, Congenital
defect/deformity, congenital
deformity/defect, Congenital
physical disorder
CM - congenital malformation
fetal developmental abnormality
fetal malformation
foetal malformation
MONDO:0000839
congenital abnormality
true
A disorder characterized by behavioral and/or psychological abnormalities, often accompanied by physical symptoms. The symptoms may cause clinically significant distress or impairment in social and occupational areas of functioning. Representative examples include anxiety disorders, cognitive disorders, mood disorders and schizophrenia.
DOID:150
ICD10:F99
ICD10:F99-F99
MESH:D001523
MFOMD:0000004
NCIT:C2893
Psychiatric disease
Psychiatric disorder
disease of mental health
mental disorder
mental dysfunction
mental illness
MONDO:0002025
psychiatric disorder
A rare slow growing benign tumor of aberrant and ectatic venous connections.
https://www.ncbi.nlm.nih.gov/pubmed/11076003
DOID:467
ICD9:228.09
ICDO:9122/0
NCIT:C4296
SCTID:403968005
UMLS:C0334532
Venous angioma
Venous malformation
MONDO:0003083
venous hemangioma
http://www.case.edu/EpSO.owl#VenousAngioma
true
A hemangioma characterized by the presence of cavernous vascular spaces.
MONDO:0006124
https://www.ncbi.nlm.nih.gov/pubmed/24134485
DOID:483
EFO:1000151
HP:0001048
ICD10:D18.0
ICDO:9121/0
MESH:D006392
NCIT:C3086
SCTID:416824008
UMLS:C0018920
cavernoma
cavernous angioma
cavernous haemangioma
cavernous hemangioma
cavernous hemangioma (morphologic abnormality)
MONDO:0003155
cavernous hemangioma
http://www.case.edu/EpSO.owl#CavernousAngioma
true
A benign or malignant tissue growth resulting from uncontrolled cell proliferation. Benign neoplastic cells resemble normal cells without exhibiting significant cytologic atypia, while malignant cells exhibit overt signs such as dysplastic features, atypical mitotic figures, necrosis, nuclear pleomorphism, and anaplasia. Representative examples of benign neoplasms include papillomas, cystadenomas, and lipomas; malignant neoplasms include carcinomas, sarcomas, lymphomas, and leukemias.
cell process disease
COHD:438112
DOID:14566
EFO:0000616
HP:0002664
ICD10:C00.D48
ICD9:140-239.99
ICD9:239.8
ICD9:239.9
MESH:D009369
NCIT:C3262
ONCOTREE:OTHER
SCTID:55342001
UMLS:CN236628
Epileptogenic tumors are, in the majority, biologically benign lesions that do not usually change over time. As a result, they do not require oncological surgery and surveillance, instead their management centres on control of seizures. Some tumors are highly associated with refractory epilepsy, and are amenable to epilepsy surgery due to their anatomic and imaging features, epilepsy surgery is therefore an important treatment option for this group of patients.
disease of cellular proliferation
neoplasia
neoplasm
neoplastic disease
neoplastic growth
tumor
tumor disease
other neoplasm
MONDO:0005070
neoplasm (disease)
true
Epileptogenic tumors are, in the majority, biologically benign lesions that do not usually change over time. As a result, they do not require oncological surgery and surveillance, instead their management centres on control of seizures. Some tumors are highly associated with refractory epilepsy, and are amenable to epilepsy surgery due to their anatomic and imaging features, epilepsy surgery is therefore an important treatment option for this group of patients.
https://www.epilepsydiagnosis.org/aetiology/tumors-overview.html
A disease that has its basis in the disruption of mental process.
EFO:0000677
ICD10:F00.F99
ICD9:290-299.99
ICD9:298.8
ICD9:V11.9
NIFSTD:birnlex_12669
SCTID:74732009
UMLS:CN240636
disorder of mental process
mental or behavioural disorder
mental process disease
disorder of mental process
MONDO:0005084
mental disorder
A herpesvirus infection caused by Cytomegalovirus. Healthy individuals generally do not produce symptoms. However, the infection may be life-threatening in affected immunocompromised patients. The virus may cause retinitis, esophagitis, gastritis, and colitis. Morphologically, it is characterized by the presence of intranuclear inclusion bodies.
COHD:440032
EFO:0001062
ICD9:078.5
MESH:D003586
NCIT:C53649
SCTID:28944009
UMLS:C0010823
CMV infection
Cytomegaloviral infection
HCMV infection
MONDO:0005132
cytomegalovirus infection
Inflammation of the brain and the spinal cord.
DOID:640
EFO:0001423
ICD9:323.9
MESH:D004679
NCIT:C34580
SCTID:62950007
UMLS:C0014070
central nervous system inflammation
encephalitis &/or myelitis
encephalitis and/or myelitis
inflammation of central nervous system
MONDO:0005156
encephalomyelitis
true
Disorders in which there is a delay in development based on that expected for a given age level or stage of development. These impairments or disabilities originate before age 18, may be expected to continue indefinitely, and constitute a substantial impairment. Biological and nonbiological factors are involved in these disorders. (From American Psychiatric Glossary, 6th ed)
https://www.ncbi.nlm.nih.gov/pubmed/20161538
EFO:0003852
MESH:D002658
MONDO:0005287
developmental disability
true
A seizure caused by a localized disorder.
DOID:2234
EFO:0004263
ICD9:345.50
MESH:D004828
NCIT:C122812
SCTID:230381009
UMLS:C0014547
localisation-related epilepsy
partial epilepsy
focal epilepsy
MONDO:0005384
partial epilepsy
https://www.ncbi.nlm.nih.gov/pubmed/31578307
EFO:0004777
ICD9:291.81
SCTID:191480000
UMLS:C0236663
Alcohol withdrawal syndrome (AWS) is the name for the symptoms that occur when a heavy drinker suddenly stops or significantly reduces their alcohol intake.
alcohol withdrawal syndrome
MONDO:0005433
alcohol withdrawal
true
Alcohol withdrawal syndrome (AWS) is the name for the symptoms that occur when a heavy drinker suddenly stops or significantly reduces their alcohol intake.
https://www.healthline.com/health/alcoholism/withdrawal
A substance-specific organic brain syndrome that follows the discontinuation of administration or use, or reduction in intake of an addictive substance, e.g. opioids, barbiturates and alcohol; amphetamines or similarly acting sympathomimetics; cocaine; nicotine; sedatives, hypnotics, or anxiolytics. Syndrome manifests with diverse, often painful physical and psychological symptoms, which include but not limited to intense drug craving, anxiety, depression, insomnia, nausea, perspiration, body aches, tremors, hallucinations, and convulsions.
DOID:0060001
EFO:0005800
ICD9:292.0
MESH:D013375
NCIT:C35046
SCTID:363101005
UMLS:C0152128
drug withdrawal
drug withdrawal syndrome
substance withdrawal
substance withdrawal disorder
substance withdrawal syndrome
withdrawal syndrome
withdrawal disorder
MONDO:0005567
substance withdrawal syndrome
Infections of the brain caused by the protozoan toxoplasma gondii that primarily arise in individuals with immunologic deficiency syndromes (see also aids-related opportunistic infections). The infection may involve the brain diffusely or form discrete abscesses. Clinical manifestations include seizures, altered mentation, headache, focal neurologic deficits, and intracranial hypertension. (From Joynt, Clinical Neurology, 1998, Ch27, pp41-3)
EFO:0007200
ICD9:130.0
MESH:D016781
SCTID:192701001
Toxoplasmosis, found worldwide, is caused by Toxoplasma gondii. Immunocompetent persons with primary infection are usually asymptomatic, but latent infection can occur. In immunosuppressed patients, especially those with HIV, reactivation can cause disease (usually when CD4 lymphocyte count falls below 100 cells/mm3). Most patients with cerebral toxoplasmosis have multiple, ring-enhancing, brain lesions often associated with edema and with predilection for involvement of the basal ganglia.
Toxoplasma encephalitis
encephalitis due to acquired toxoplasmosis
meningoencephalitis due to toxoplasmosis
MONDO:0005697
cerebral toxoplasmosis
true
Toxoplasmosis, found worldwide, is caused by Toxoplasma gondii. Immunocompetent persons with primary infection are usually asymptomatic, but latent infection can occur. In immunosuppressed patients, especially those with HIV, reactivation can cause disease (usually when CD4 lymphocyte count falls below 100 cells/mm3). Most patients with cerebral toxoplasmosis have multiple, ring-enhancing, brain lesions often associated with edema and with predilection for involvement of the basal ganglia.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
Rolandic epilepsy (RE) is a focal childhood epilepsy characterized by seizures consisting of unilateral facial sensory-motor symptoms, with electroencephalogram (EEG) showing sharp biphasic waves over the rolandic region. It is an age-related epilepsy, with excellent outcome.
DOID:3329
GARD:0010287
ICD10:G40.0
ICD9:345.80
NCIT:C116538
OMIM:117100
Orphanet:1945
SCTID:44145005
UMLS:C0376532
UMLS:C2363129
UMLS:CN200685
BCECTS
BECRS
BECTS
BRE
benign Rolandic epilepsy
benign childhood epilepsy with centrotemporal spike
benign childhood epilepsy with centrotemporal spikes
benign epilepsy of childhood with centrotemporal spikes
benign epilepsy with centrotemporal spikes
benign familial epilepsy of childhood with rolandic spikes
benign rolandic epilepsy
centrotemporal epilepsy
rolandic epilepsy
sylvan seizures
CENTRALOPATHIC epilepsy
benign epilepsy of childhood with centrotemporal spikes (BECCT)
benign epilepsy with centro-temporal spikes (BECTS)
benign rolandic epilepsy (BRE)
benign rolandic epilepsy of childhood (BREC)
temporal-central focal epilepsy
MONDO:0007295
rolandic epilepsy
http://www.case.edu/EpSO.owl#ChildhoodRolandicEpilepsy
https://rarediseases.info.nih.gov/diseases/10287/benign-rolandic-epilepsy-bre
true
Any benign neonatal seizures in which the cause of the disease is a mutation in the KCNQ2 gene.
https://www.ncbi.nlm.nih.gov/pubmed/30782577
MESH:C567743
OMIM:121200
UMLS:C3149074
Benign familial neonatal seizures (BFNS) is a condition characterized by recurrent seizures in newborn babies. The seizures begin around day 3 of life and usually go away within 1 to 4 months. The seizures can involve only one side of the brain (focal seizures) or both sides (generalized seizures). Many infants with this condition have generalized tonic-clonic seizures (also known as grand mal seizures). This type of seizure involves both sides of the brain and affects the entire body, causing muscle rigidity, convulsions, and loss of consciousness.
KCNQ2 benign neonatal seizures
benign familial neonatal seizure
benign neonatal seizures caused by mutation in KCNQ2
seizures, benign familial neonatal, 1
seizures, benign familial neonatal, type 1
BFNS1
epilepsy, benign neonatal, 1, and/or myokymia
seizures, benign familial neonatal, 1, and/or myokymia
seizures, benign familial neonatal, 1; BFNS1
MONDO:0007365
seizures, benign familial neonatal, 1
true
Benign familial neonatal seizures (BFNS) is a condition characterized by recurrent seizures in newborn babies. The seizures begin around day 3 of life and usually go away within 1 to 4 months. The seizures can involve only one side of the brain (focal seizures) or both sides (generalized seizures). Many infants with this condition have generalized tonic-clonic seizures (also known as grand mal seizures). This type of seizure involves both sides of the brain and affects the entire body, causing muscle rigidity, convulsions, and loss of consciousness.
https://ghr.nlm.nih.gov/condition/benign-familial-neonatal-seizures
OMIM:130200
electroencephalographic peculiarity: 14 and 6 per sec. positive spike phenomenon
epileptic encephalopathy with continous spikes and wave during sleep
MONDO:0007530
electroencephalographic peculiarity: 14 and 6 per sec. positive spike phenomenon
http://www.case.edu/EpSO.owl#Fourteen-SixHertzPositiveBurst
Benign paroxysmal tonic upgaze of childhood with ataxia is a rare paroxysmal movement disorder characterized by episodes of sustained, conjugate, upward deviation of the eyes and down beating saccades in attempted downgaze (with preserved horizontal eye movements) which is accompanied by ataxic symptomatology (unsteady gait, lack of balance and movement coordination disturbances) in an otherwise healthy individual. Bilateral vertical nystagmus is associated. Symptoms generally disappear spontaneously within 1-2 years after onset.
GARD:0004176
ICD10:G96.8
MESH:C566817
OMIM:168885
Orphanet:1179
SCTID:763127004
UMLS:C1868576
Benign paroxysmal tonic upgaze presents in early infancy and is characterised by prolonged or intermittent upgaze which may last hours or days. Children may be ataxic during episodes and attacks occur more frequently during intercurrent illnesses.
Ouvrier-Billson syndrome
benign paroxysmal tonic upgaze
Ouvrier Billson syndrome
paroxysmal tonic upgaze, benign childhood, with ataxia
MONDO:0008206
benign paroxysmal tonic upgaze of childhood with ataxia
true
Benign paroxysmal tonic upgaze presents in early infancy and is characterised by prolonged or intermittent upgaze which may last hours or days. Children may be ataxic during episodes and attacks occur more frequently during intercurrent illnesses.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#benign-paro
Celiac disease, epilepsy and cerebral calcification syndrome (CEC) is a rare disorder characterized by the combination of auto-immune intestinal disease, epileptic seizures and cerebral calcifications.
GARD:0002166
MESH:C535496
OMIM:226810
Orphanet:1459
UMLS:C1856930
An association between epilepsy and celiac disease has been debated however has not been convincingly established in more careful studies. Celiac disease, epilepsy and occipital calcifications is a rare condition with the following characteristics:
Mean age at onset is 6 years
Bilateral cortical/subcortical parieto-occipital calcifications without brain atrophy
Focal sensory visual seizures are common, these may evolve to focal to bilateral tonic-clonic seizures.
Many cases respond to anti-seizure medications, however some require a gluten free diet for seizure control
CEC
celiac disease, epilepsy, and cerebral calcification syndrome
bilateral occipital calcifications with epilepsy
celiac disease epilepsy occipital calcifications
epilepsy occipital calcifications
epilepsy with bilateral occipital calcifications
familial unilateral and bilateral occipital calcifications and epilepsy
MONDO:0009187
celiac disease-epilepsy-cerebral calcification syndrome
true
An association between epilepsy and celiac disease has been debated however has not been convincingly established in more careful studies. Celiac disease, epilepsy and occipital calcifications is a rare condition with the following characteristics:
Mean age at onset is 6 years
Bilateral cortical/subcortical parieto-occipital calcifications without brain atrophy
Focal sensory visual seizures are common, these may evolve to focal to bilateral tonic-clonic seizures.
Many cases respond to anti-seizure medications, however some require a gluten free diet for seizure control
https://www.epilepsydiagnosis.org/aetiology/antibody-mediated-overview.html#celiac
Pyridoxine-dependent epilepsy (PDE) is a rare neurometabolic disease characterized by recurrent intractable seizures in the prenatal, neonatal and postnatal period that are resistant to anti-epileptic drugs (AEDs) but that are responsive to pharmacological dosages of pyridoxine (vitamin B6).
GARD:0009298
ICD10:G40.8
MESH:C536254
Orphanet:3006
SCTID:734434007
UMLS:C1849508
UMLS:CN203406
In pyridoxine dependent epilepsy, there is a defect in α-aminoadipic semialdehyde (AASA) dehydrogenase, with accumulation of products that inactivate pyridoxal-5-phosphate (PLP). Biochemical markers include increased AASA (specific) and pipecolic acid (non specific) in urine, plasma and CSF (even on treatment). The diagnosis is supported by finding a mutation in the antiquitin gene (ALDH7A1, chromosome 5q31). In pyridoxine 5' phosphate oxidase (PNPO) deficiency, biochemical markers may be unhelpful with only subtle findings. Pyridoxine supplementation is ineffective, the patients require PLP to ameliorate the neurological condition.
antiquitin deficiency
pyridoxine-dependent epilepsy
vitamin B6-dependent seizures
AASA dehydrogenase deficiency
EPD
epilepsy, pyridoxine-dependent
epilepsy, pyridoxine-dependent; Epd
pyridoxine dependency
pyridoxine dependency with seizures
MONDO:0009945
pyridoxine-dependent epilepsy
true
In pyridoxine dependent epilepsy, there is a defect in α-aminoadipic semialdehyde (AASA) dehydrogenase, with accumulation of products that inactivate pyridoxal-5-phosphate (PLP). Biochemical markers include increased AASA (specific) and pipecolic acid (non specific) in urine, plasma and CSF (even on treatment). The diagnosis is supported by finding a mutation in the antiquitin gene (ALDH7A1, chromosome 5q31). In pyridoxine 5' phosphate oxidase (PNPO) deficiency, biochemical markers may be unhelpful with only subtle findings. Pyridoxine supplementation is ineffective, the patients require PLP to ameliorate the neurological condition.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#pyridoxine
Pallister-Killian syndrome (PKS) is a rare multiple congenital anomaly/intellectual deficit syndrome caused by mosaic tissue-limited tetrasomy for chromosome 12p.
GARD:0008421
ICD10:Q99.8
ICD9:758.81
MESH:C538105
NCIT:C75458
OMIM:601803
Orphanet:884
SCTID:9527009
UMLS:C0265449
This chromosomal abnormality results in dysmorphic features that include a coarsened flat facies, high forehead, reduced scalp hair over the frontal and temporal regions, hypertelorism, a broad nasal bridge, a small anteverted nose, a high arched palate, microretrognathia, a cupid-bow shaped upper lip and low-set ears. There may be cardiac, diaphragmatic and ocular abnormalities. There is developmental delay, severe intellectual impairment and epilepsy. Seizures of varied types have been reported, including epileptic spasms. The disorder is sporadic. Most patients are mosaic for tetrasomy 12p and it may be undetectable in blood lymphocytes. To diagnose this disorder, examination of fibroblasts may be required.
Isochromosome 12p mosaicism
Isochromosome 12p syndrome
Pallister-Killian syndrome
tetrasomy type 12p
Hexasomy 12P, Mosaic
Isochromosome 12P syndrome
Killian Teschler-Nicola syndrome
Killian syndrome
PKS
Pallister Killian syndrome
Pallister mosaic syndrome
Pallister-Killian mosaic syndrome
Pallister-Killian syndrome; PKS
Teschler-Nicola Killian syndrome
chromosome 12, Isochromosome 12p syndrome
tetrasomy 12P, Mosaic
MONDO:0011146
tetrasomy 12p
true
This chromosomal abnormality results in dysmorphic features that include a coarsened flat facies, high forehead, reduced scalp hair over the frontal and temporal regions, hypertelorism, a broad nasal bridge, a small anteverted nose, a high arched palate, microretrognathia, a cupid-bow shaped upper lip and low-set ears. There may be cardiac, diaphragmatic and ocular abnormalities. There is developmental delay, severe intellectual impairment and epilepsy. Seizures of varied types have been reported, including epileptic spasms. The disorder is sporadic. Most patients are mosaic for tetrasomy 12p and it may be undetectable in blood lymphocytes. To diagnose this disorder, examination of fibroblasts may be required.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#pallister
MESH:C565296
OMIM:605751
UMLS:C1853995
Benign familial infantile seizure is an autosomal dominant disorder characterized by afebrile partial complex or generalized tonic-clonic seizures occurring between 3 and 12 months of age with a good response to medication and no neurologic sequelae. Seizures usually remit by age 18 months
benign familial infantile seizure
seizures, benign familial infantile, 2
seizures, benign familial infantile, type 2
BFIS2
convulsions, benign familial infantile, 2
seizures, benign familial infantile, 2; BFIS2
MONDO:0011593
seizures, benign familial infantile, 2
true
Benign familial infantile seizure is an autosomal dominant disorder characterized by afebrile partial complex or generalized tonic-clonic seizures occurring between 3 and 12 months of age with a good response to medication and no neurologic sequelae. Seizures usually remit by age 18 months
https://www.omim.org/entry/605751
Bleeding into one or both cerebral hemispheres including the basal ganglia and the cerebral cortex. It is often associated with hypertension and craniocerebral trauma.
https://www.ncbi.nlm.nih.gov/pubmed/2512371
EFO:0005669
ICD9:431
MESH:D002543
OMIM:614519
SCTID:274100004
hemorrhage, intracerebral, susceptibility to
hemorrhage, intracerebral, susceptibility to; ich
ich
stroke, hemorrhagic, susceptibility to
MONDO:0013792
Editor note: consider separate subclass for OMIM ID
intracerebral hemorrhage
http://www.case.edu/EpSO.owl#IntracerebralHemorrhage
true
OMIM:616421
UMLS:C4085238
Epilepsy with myoclonic-atonic seizures (previously known as epilepsy with myoclonic astatic seizures, or Doose syndrome) is a syndrome characterized by the presence of myoclonic-atonic seizures in an otherwise normal child who may have a history of febrile and/or afebrile seizures. There is often a family history of seizures.
Doose syndrome
Epilepsy with myoclonic-atonic seizures
myoclonic-atonic epilepsy
mae
myoclonic-atonic epilepsy; mae
MONDO:0014633
myoclonic-atonic epilepsy
true
Epilepsy with myoclonic-atonic seizures (previously known as epilepsy with myoclonic astatic seizures, or Doose syndrome) is a syndrome characterized by the presence of myoclonic-atonic seizures in an otherwise normal child who may have a history of febrile and/or afebrile seizures. There is often a family history of seizures.
https://www.epilepsydiagnosis.org/syndrome/lks-overview.html
Ring chromosome 14 syndrome is characterized by intellectual deficit, retinal and skin pigmentation disorders, seizures, and dysmorphic features, including flat occiput, epicanthal folds, downward slanting eyes, flat nasal bridge, upturned nostrils, short neck, and large low set ears.
GARD:0006072
ICD10:Q93.2
ICD9:758.89
MESH:C535487
OMIM:616606
Orphanet:1440
SCTID:702345009
UMLS:CN233170
This is a rare chromosomal disorder, consistently associated with epilepsy. The epilepsy is usually of early onset and seizures are intractable but there are no recognized distinctive seizure or electrographic features. Focal seizures facilitated during febrile illness and Ohtahara syndrome have been reported associated with this chromosomal abnormality. Intellectual impairment (moderate-severe), microcephaly, facial dysmorphism (narrow long face, retrognathia, short neck), cardiac (pulmonary stenosis) and ocular abnormalities (cataract, retinal pigmentation, macular abnormality) occur. Most cases are sporadic, but familial cases have been reported. Most patients are mosaic for ring 14 abnormality. To diagnose this disorder a karyotype should be performed examining 50-100 mitoses, this has to be specifically requested, as it may not be part of routine karyotype assessment. CGH microarray may not detect this disorder if no deletion occurs in the ring formation.
Ring chromosome type 14
RING chromosome 14 syndrome
Ring 14
chromosome 14 ring
MONDO:0014708
ring chromosome 14
true
This is a rare chromosomal disorder, consistently associated with epilepsy. The epilepsy is usually of early onset and seizures are intractable but there are no recognized distinctive seizure or electrographic features. Focal seizures facilitated during febrile illness and Ohtahara syndrome have been reported associated with this chromosomal abnormality. Intellectual impairment (moderate-severe), microcephaly, facial dysmorphism (narrow long face, retrognathia, short neck), cardiac (pulmonary stenosis) and ocular abnormalities (cataract, retinal pigmentation, macular abnormality) occur. Most cases are sporadic, but familial cases have been reported. Most patients are mosaic for ring 14 abnormality. To diagnose this disorder a karyotype should be performed examining 50-100 mitoses, this has to be specifically requested, as it may not be part of routine karyotype assessment. CGH microarray may not detect this disorder if no deletion occurs in the ring formation.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#ring14
Opsoclonus myoclonus syndrome (OMS) is a rare neuroinflammatory disease of paraneoplastic, parainfectious or idiopathic origin, characterized by opsoclonus, myoclonus, ataxia, and behavioral and sleep disorders.
EFO:1001383
GARD:0010009
ICD10:G25.3
ICD9:379.59
MESH:D053578
MedDRA:10053854
NCIT:C4686
Orphanet:1183
SCTID:230350000
UMLS:C0393626
Opsoclonus-myoclonus syndrome is an autoimmune neurological disorder that may be seen in association with neuroblastoma, following viral infections or may be of unknown cause. The earliest feature is often ataxia followed by opsoclonus (multidirectional, erratic, darting eye movements). Myoclonus is a mixture of small- and larger-amplitude muscle jerks, giving rise to a tremulous appearance. Myoclonus is primarily action-induced, but in severe cases is present at rest. The eye movement abnormality and myoclonus may initially be thought to be epileptic, however the pattern of eye movements allows them to be distinguished from eye movements seen in typical absence seizures.
Ataxo-opso-myoclonus syndrome
Kinsbourne syndrome
OMS
POMA syndrome
dancing eye syndrome
dancing eye-dancing feet syndrome
oma syndrome
opsoclonus myoclonus syndrome
opsoclonus-myoclonus-ataxia syndrome
paraneoplastic opsoclonus-myoclonus
paraneoplastic opsoclonus-myoclonus-ataxia syndrome
MONDO:0015247
opsoclonus-myoclonus syndrome
true
Opsoclonus-myoclonus syndrome is an autoimmune neurological disorder that may be seen in association with neuroblastoma, following viral infections or may be of unknown cause. The earliest feature is often ataxia followed by opsoclonus (multidirectional, erratic, darting eye movements). Myoclonus is a mixture of small- and larger-amplitude muscle jerks, giving rise to a tremulous appearance. Myoclonus is primarily action-induced, but in severe cases is present at rest. The eye movement abnormality and myoclonus may initially be thought to be epileptic, however the pattern of eye movements allows them to be distinguished from eye movements seen in typical absence seizures.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#opsoclonus-myoclonus
Jeavons syndrome is an idiopathic generalized form of reflex epilepsy characterized by childhood onset, unique seizure manifestations, striking light sensitivity, and possible occurrence of generalized tonic-clonic seizures.
ICD10:G40.3
Orphanet:139431
SCTID:716278005
UMLS:C4274731
UMLS:CN199399
This syndrome (previously known as Jeavons syndrome) is characterized by daily eyelid myoclonias with or without absences induced by eye closure and visual stimulation, seen in an otherwise normal child.This syndrome is characterized by onset of seizures between 2-14 years (peak 6-8 years). Both sexes are affected with a female predominance (2F:M). Antecedent and birth history is normal. Head size and neurological examination are normal. Development and cognition are typically normal although individuals with borderline intellectual functioning and intellectual disability are seen.
EMEA
epilepsy with eyelid myoclonias
eyelid myoclonia with and without absences
MONDO:0015346
Jeavons syndrome
true
This syndrome (previously known as Jeavons syndrome) is characterized by daily eyelid myoclonias with or without absences induced by eye closure and visual stimulation, seen in an otherwise normal child.This syndrome is characterized by onset of seizures between 2-14 years (peak 6-8 years). Both sexes are affected with a female predominance (2F:M). Antecedent and birth history is normal. Head size and neurological examination are normal. Development and cognition are typically normal although individuals with borderline intellectual functioning and intellectual disability are seen.
https://www.epilepsydiagnosis.org/syndrome/emwa-overview.html
Ring chromosome 20 syndrome is marked by a characteristic seizure phenotype. Depending on the amount of chromosomal loss and associated mosaicism, ring(20) can be associated with macrocephaly, mild to moderate intellectual deficit, or behavioural problems. In rare cases, brain, kidney or heart malformations may be present.
GARD:0001334
ICD10:Q93.2
ICD9:758.89
MESH:C580424
Orphanet:1444
SCTID:23686004
This is a rare chromosomal disorder with epilepsy as the striking feature. Although some patients may have microcephaly, intellectual impairment (two thirds of patients) and behavioral disorders, there are few distinctive clinical features that aid identification of this syndrome. Dysmorphic features are not expected. Most cases are sporadic, but familial cases have been reported. Mosaicism is common with intellectual impairment (but not the epilepsy) correlating with the degree of mosaicism. Nocturnal frontal lobe seizures are common. Around 50% of patients report frightening visual hallucinations during their focal seizures. Seizures may manifest as prolonged confusional states, lasting minutes to half an hour, during which the patient may be motionless and staring or may have automatisms and confused wandering. Perioral and eyelid myoclonic jerks may accompany these events. The ictal EEG shows long periods of widespread rhythmic theta and high-amplitude 2-3 Hz rhythmic, notched, frontally predominant, slow waves. Spike-and-wave is of low amplitude. Interictal EEG may be normal or show focal bi-fronto-temporal spikes. Seizures are usually frequent and intractable to medications. To diagnose this disorder a karyotype should be performed examining 50-100 mitoses, this has to be specifically requested, as it may not be part of routine karyotype assessment. CGH microarray may not detect this disorder if no deletion occurs in the ring formation.
Ring chromosome type 20
R20
Ring 20
Ring chromosome 20 syndrome
chromosome 20 ring
MONDO:0015436
ring chromosome 20
true
This is a rare chromosomal disorder with epilepsy as the striking feature. Although some patients may have microcephaly, intellectual impairment (two thirds of patients) and behavioral disorders, there are few distinctive clinical features that aid identification of this syndrome. Dysmorphic features are not expected. Most cases are sporadic, but familial cases have been reported. Mosaicism is common with intellectual impairment (but not the epilepsy) correlating with the degree of mosaicism. Nocturnal frontal lobe seizures are common. Around 50% of patients report frightening visual hallucinations during their focal seizures. Seizures may manifest as prolonged confusional states, lasting minutes to half an hour, during which the patient may be motionless and staring or may have automatisms and confused wandering. Perioral and eyelid myoclonic jerks may accompany these events. The ictal EEG shows long periods of widespread rhythmic theta and high-amplitude 2-3 Hz rhythmic, notched, frontally predominant, slow waves. Spike-and-wave is of low amplitude. Interictal EEG may be normal or show focal bi-fronto-temporal spikes. Seizures are usually frequent and intractable to medications. To diagnose this disorder a karyotype should be performed examining 50-100 mitoses, this has to be specifically requested, as it may not be part of routine karyotype assessment. CGH microarray may not detect this disorder if no deletion occurs in the ring formation.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#ring20
Febrile infection-related epilepsy syndrome (FIRES) describes an explosive-onset, potentially fatal acute epileptic encephalopathy that develops in previously healthy children and adolescents following the onset of a non-specific febrile illness.
GARD:0011005
ICD10:G40.5
Orphanet:163703
SCTID:725413002
UMLS:CN199955
Febrile infection related epilepsy syndrome (FIRES) has previously also been known as fever induced refractory epilepsy in school-aged children, devastating epileptic encephalopathy in school aged children (DESC) and acute encephalitis with refractory repetitive partial seizures (AERRPS). It is a severe post-infectious neurological disorder that presents with intractable status epilepticus in a previously normal child (or less commonly adult) after a febrile illness. If the patient survives, they have intellectual and motor impairment and ongoing intractable seizures.
AERRPS
DESC syndrome
FIRES
acute encephalitis with refractory repetitive partial seizures
acute non-herpetic encephalitis with severe refractory status epilepticus
devastating epileptic encephalopathy in school-aged children
fever-induced refractory epileptic encephalopathy in school-aged children
idiopathic catastrophic epileptic encephalopathy
severe refractory status epilepticus owing to presumed encephalitis
status epilepticus owing to presumed encephalitis
MONDO:0015584
febrile infection-related epilepsy syndrome
true
Febrile infection related epilepsy syndrome (FIRES) has previously also been known as fever induced refractory epilepsy in school-aged children, devastating epileptic encephalopathy in school aged children (DESC) and acute encephalitis with refractory repetitive partial seizures (AERRPS). It is a severe post-infectious neurological disorder that presents with intractable status epilepticus in a previously normal child (or less commonly adult) after a febrile illness. If the patient survives, they have intellectual and motor impairment and ongoing intractable seizures.
https://www.epilepsydiagnosis.org/aetiology/febrile-infection-related-epilepsy-overview.html
Orphanet:166311
MONDO:0015642
benign partial infantile seizures
Startle epilepsy is a rare neurologic disease characterized by frequent and spontaneous epileptic seizures (frequently with symmetrical or asymmetrical tonic features) triggered by a normal startle in response to a sudden and unexpected somatosensory (most frequently auditory) stimulus. Falls are common and can be traumatic. In most cases, the disease is associated with spastic hemi-, di-, or tetraplegia and intellectual disability.
ICD10:G40.8
Orphanet:166427
SCTID:763632004
UMLS:CN200058
MONDO:0015648
startle epilepsy
true
true
Orphanet:166463
syndromic epilepsy
MONDO:0015650
epilepsy syndrome
Orphanet:166475
UMLS:CN200064
MONDO:0015654
idiopathic or cryptogenic familial epilepsy syndrome with identified loci/genes
Orphanet:166484
UMLS:CN200066
MONDO:0015657
inflammatory and autoimmune disease with epilepsy
Orphanet:166490
UMLS:CN200068
MONDO:0015659
infectious disease with epilepsy
Trisomy 12p is an extremely rare chromosomal disorder (over 30 cases reported worldwide) characterized by craniofacial malformations (round face, prominent cheeks, high bulging forehead, broad and flat nasal bridge, short nose with anteverted nostrils, long philtrum, prominent and everted lower lip, low-set ears, abnormally folded helix, protuberant antihelix), postnatal growth retardation, mental and psychomotor retardation, generalized hypotonia, abnormally short wide hands and/or other abnormalities.
GARD:0005305
ICD10:Q92.3
MESH:C538299
Orphanet:1699
UMLS:C0795845
Trisomy 12p is a chromosomal abnormality that results in developmental delay, intellectual impairment and a number of dysmorphic features including turricephaly, a flattened occiput, short neck, rounded facies with prominent cheeks, high prominent forehead, hypertelorism, epicanthic folds, broad nasal bridge and other facial dysmorphism. Cardiac and limb defects may occur. Structural brain abnormalities include polymicrogyria and focal cortical dysplasia. Seizures are often generalized, with myoclonic absences and myoclonic seizures reported, EEGs have shown 3Hz generalized spike-and-wave.
Duplication 12p
trisomy type 12p
12p duplication
12p trisomy
chromosome 12p duplication
partial trisomy 12p
MONDO:0015723
trisomy 12p
true
Trisomy 12p is a chromosomal abnormality that results in developmental delay, intellectual impairment and a number of dysmorphic features including turricephaly, a flattened occiput, short neck, rounded facies with prominent cheeks, high prominent forehead, hypertelorism, epicanthic folds, broad nasal bridge and other facial dysmorphism. Cardiac and limb defects may occur. Structural brain abnormalities include polymicrogyria and focal cortical dysplasia. Seizures are often generalized, with myoclonic absences and myoclonic seizures reported, EEGs have shown 3Hz generalized spike-and-wave.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#trisomy12p
Orphanet:182064
UMLS:CN200514
MONDO:0015916
rare neuroinflammatory or neuroimmunological disease
https://github.com/monarch-initiative/mondo/issues/254
A grade III or grade IV glioma arising from the central nervous system. This category includes glioblastoma, anaplastic astrocytoma, anaplastic ependymoma, anaplastic oligodendroglioma, and anaplastic oligoastrocytoma.
glioma
neuroglial tumor
DOID:3070
ICDO:9380/3
KEGG:05214
MedDRA:10018338
NCIT:C4822
OMIMPS:137800
Orphanet:182067
UMLS:C0555198
glial cell tumor
glioma, malignant
high grade glioma
high-grade glioma
malignant glial neoplasm
malignant glial tumor
malignant glioma
malignant neuroglial neoplasm
malignant neuroglial tumor
MONDO:0015917
malignant glioma
A rare, progressive chronic inflammation of a single cerebral hemisphere that usually affects children. It is characterized by severe seizures, loss of motor skills and speech, hemiparesis, and dementia.
GARD:0007527
ICD10:G04.8
ICD9:323.9
MESH:C535291
NCIT:C125384
Orphanet:1929
SCTID:230191005
UMLS:C2930868
This epilepsy is associated with onset of seizures between 1-10 years of age (peak 5-6 years), later onset is exceptional. Both sexes are affected equally. Antecedent and birth history is usually normal. Head size and neurological examination are usually normal prior to onset of the epilepsy. With time, a progressive hemiparesis develops. Some children may first present with a unilateral movement disorder (hemidystonia, hemiathetosis) prior to onset of seizures. Iritis has been reported as an antecedent condition. CSF may show non-specific findings including the presence of oligo- or monoclonal bands.
There are three stages to the illness i) an initial prodromal phase with infrequent seizures and no hemiparesis ii) an acute phase with frequent seizures and development of hemiparesis and iii) a residual stage with permanent stable hemiparesis.
CFE
Rasmussen Encephalitis
Rasmussen encephalitis
Rasmussen syndrome
chronic focal encephalitis
RE
MONDO:0016019
Rasmussen subacute encephalitis
http://www.case.edu/EpSO.owl#RasmussenEncephalitis
true
This epilepsy is associated with onset of seizures between 1-10 years of age (peak 5-6 years), later onset is exceptional. Both sexes are affected equally. Antecedent and birth history is usually normal. Head size and neurological examination are usually normal prior to onset of the epilepsy. With time, a progressive hemiparesis develops. Some children may first present with a unilateral movement disorder (hemidystonia, hemiathetosis) prior to onset of seizures. Iritis has been reported as an antecedent condition. CSF may show non-specific findings including the presence of oligo- or monoclonal bands.
There are three stages to the illness i) an initial prodromal phase with infrequent seizures and no hemiparesis ii) an acute phase with frequent seizures and development of hemiparesis and iii) a residual stage with permanent stable hemiparesis.
https://www.epilepsydiagnosis.org/aetiology/rasmussen-overview.html
Benign familial neonatal epilepsy (BFNE) is a rare genetic epilepsy syndrome characterized by the occurrence of afebrile seizures in otherwise healthy newborns with onset in the first few days of life.
DOID:14264
ICD10:G40.3
MedDRA:10067866
NCIT:C117307
OMIMPS:121200
Orphanet:1949
SCTID:38281008
BFNS
benign Familal neonatal seizures
benign familial convulsion
benign familial convulsions
benign familial neonatal convulsions
benign familial neonatal seizures
benign neonatal convulsions
seizures, benign familial neonatal
MONDO:0016027
benign neonatal seizures
ICD9:333.99
Orphanet:200037
SCTID:230310003
Paroxysmal dystonia (historically known as tonic spasms or tonic seizures) is a type of fluctuating dystonia characterized by repetitive and patterned twisting movements and abnormal postures lasting seconds to hours (Demirkiran and Jankovic, 1995). Bouts of paroxysmal dystonia occur when opposing muscle groups contract simultaneously. Paroxysmal dystonia may affect the face, arm, or leg and is often precipitated by tactile stimulation, voluntary movement, loud noise, or hyperventilation.
MONDO:0016058
paroxysmal dystonia
Paroxysmal dystonia (historically known as tonic spasms or tonic seizures) is a type of fluctuating dystonia characterized by repetitive and patterned twisting movements and abnormal postures lasting seconds to hours (Demirkiran and Jankovic, 1995). Bouts of paroxysmal dystonia occur when opposing muscle groups contract simultaneously. Paroxysmal dystonia may affect the face, arm, or leg and is often precipitated by tactile stimulation, voluntary movement, loud noise, or hyperventilation.
https://www.sciencedirect.com/topics/medicine-and-dentistry/paroxysmal-dystonia
Narcolepsy with cataplexy is a sleep disorder characterized by excessive day-time sleepiness associated with uncontrollable sleep urges and cataplexy (loss of muscle tone often triggered by pleasant emotions).
EFO:0000614
GARD:0007162
ICD10:G47.4
ICD10:G47.41
ICD10:G47.419
ICD9:347.0
MedDRA:10028713
Orphanet:2073
Narcolepsy-cataplexy is a lifelong neurological disorder of sleep state boundary control in which the distinctions between sleep states, particularly REM sleep, and wakening are blurred.
GC)lineau disease
Gélineau disease
narcolepsy with cataplexy
narcolepsy-cataplexy syndrome
Gelineau syndrome
Gelineau's syndrome
narcoleptic syndrome
paroxysmal sleep
MONDO:0016158
narcolepsy-cataplexy syndrome
true
Narcolepsy-cataplexy is a lifelong neurological disorder of sleep state boundary control in which the distinctions between sleep states, particularly REM sleep, and wakening are blurred.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#narcolepsy
https://www.ncbi.nlm.nih.gov/pubmed/15146004
GARD:0002661
ICD10:Q04.8
Orphanet:2149
SCTID:253151003
Periventricular nodular heterotopia (PNH) is a brain malformation, due to abnormal neuronal migration, in which a subset of neurons fails to migrate into the developing cerebral cortex and remains as nodules that line the ventricular surface. Classical PNH is a rare X-linked dominant disorder far more frequent in females who present normal intelligence to borderline intellectual deficit, epilepsy of variable severity and extra-central nervous system signs, especially cardiovascular defects or coagulopathy. The disorder is generally associated with prenatal lethality in males.
Nodular Heterotopias
genetic nodular heterotopia
nodular heterotopia
hereditary nodular heterotopia
MONDO:0016292
nodular neuronal heterotopia
http://www.case.edu/EpSO.owl#NodularHeterotopias
true
Periventricular nodular heterotopia (PNH) is a brain malformation, due to abnormal neuronal migration, in which a subset of neurons fails to migrate into the developing cerebral cortex and remains as nodules that line the ventricular surface. Classical PNH is a rare X-linked dominant disorder far more frequent in females who present normal intelligence to borderline intellectual deficit, epilepsy of variable severity and extra-central nervous system signs, especially cardiovascular defects or coagulopathy. The disorder is generally associated with prenatal lethality in males.
https://www.orpha.net/consor/cgi-bin/OC_Exp.php?Expert=98892
A congenital abnormality in which the occipitofrontal circumference is greater than two standard deviations above the mean for a given age. It is associated with hydrocephalus; subdural effusion; arachnoid cysts; or is part of a genetic condition (e.g., alexander disease; sotos syndrome).
https://www.ncbi.nlm.nih.gov/pubmed/28658095
HP:0001355
ICD10:Q04.5
ICD9:742.4
MESH:D058627
MedDRA:10050183
Orphanet:2477
SCTID:9740002
macroencephaly
megalencephaly
MONDO:0016608
megalencephaly (disease)
http://www.case.edu/EpSO.owl#Megalencephaly
true
MedDRA:10065869
Orphanet:251592
MONDO:0016685
low-grade astrocytoma
A low-grade (WHO grade II) astrocytic neoplasm. It is characterized by diffuse infiltration of neighboring central nervous system structures. These lesions typically affect young adults and have a tendency for progression to anaplastic astrocytoma and glioblastoma. Based on the IDH genes mutation status, diffuse astrocytomas are classified as IDH-mutant, IDH-wildtype, and not otherwise specified.
GARD:0005907
ICD10:C71.9
NCIT:C7173
ONCOTREE:DASTR
Orphanet:251595
UMLS:C0280785
WHO grade II astrocytoma
astrocytoma, diffuse
astrocytoma, diffuse, malignant
diffuse astrocytoma
grade II astrocytic neoplasm
grade II astrocytic tumor
grade II astrocytoma
fibrillary astrocytoma (histologic variant)
gemistocytic astrocytoma (histologic variant)
low-grade astrocytoma, NOS
low-grade diffuse astrocytoma
protoplasmic astrocytoma (histologic variant)
MONDO:0016686
diffuse astrocytoma
The most frequent histological variant of diffuse astrocytoma. It is predominantly composed of fibrillary neoplastic astrocytes. Nuclear atypia is a diagnostic criterion but mitotic activity, necrosis and microvascular proliferation are absent. The occasional or regional occurrence of gemistocytic neoplastic cells is compatible with the diagnosis of fibrillary astrocytoma. (WHO)
DOID:6726
ICD10:C71.9
ICDO:9420/3
MedDRA:10065889
NCIT:C4322
Orphanet:251601
UMLS:C0334582
diffuse astrocytoma
fibrillary astrocytic tumors
fibrillary astrocytoma
MONDO:0016688
fibrillary astrocytoma
https://www.epilepsy.com/learn/professionals/co-existing-disorders/brain-tumors/astrocytoma
true
Orphanet:251651
UMLS:CN201945
mixed oligodendroglial and astrocytic tumor
MONDO:0016701
oligoastrocytic tumor
A WHO grade II tumor composed of a conspicuous mixture of two distinct neoplastic cell types morphologically resembling the tumor cells in oligodendroglioma and diffuse astrocytoma. (WHO)
DOID:7912
EFO:0000630
GARD:0009769
ICD10:C71.9
MedDRA:10027744
NCIT:C4050
ONCOTREE:OAST
Orphanet:251656
SCTID:716647001
UMLS:C0280793
MOA
WHO grade II mixed glioma
glioma, mixed, benign
mixed astrocytic-oligodendroglial neoplasm
mixed astrocytic-oligodendroglial tumor
mixed astrocytoma-oligodendroglioma
mixed oligo-astrocytoma
mixed oligoastrocytoma
mixed oligodendroglioma-astrocytoma
oligoastrocytoma
MONDO:0016702
oligoastrocytoma
http://www.case.edu/EpSO.owl#Oligoastrocytoma
Angiocentric glioma (AG) is an extremely rare slow-growing glial neoplasm of the central nervous system, usually arising in a superficial location in the cerebrum, affecting all ages and both sexes, and characterized by intractable seizures and headaches, with most cases being cured by surgical incision alone and therefore having a good prognosis.
ICD10:C71.9
ICDO:9431/1
NCIT:C92552
ONCOTREE:ANGL
Orphanet:251671
UMLS:C2363903
Monomorphus angiocentric glioma
angiocentric glioma (WHO grade I)
angiocentric neuroepithelial tumor
ANGL
MONDO:0016705
angiocentric glioma
http://www.case.edu/EpSO.owl#AngiocentricGlioma
true
Spasmus nutans (SN) is a rare eye disease characterized by the clinical triad of asymmetric and pendular nystagmus, head nodding, and torticollis.
HP:0010533
ICD10:F98.4
MedDRA:10059593
Orphanet:279882
SCTID:400948003
UMLS:C1527306
This disorder of eye movement is seen in infants, typically with onset between 4 and 12 months of age. The cause is unknown; neuroimaging is required to exclude structural brain abnormalities. Vertical eye movements occur, these are rapid and side-to-side. There may be a head tilt and head nodding. The events resolve with time.
Spasmus nutans
MONDO:0017201
Spasmus nutans (disease)
true
This disorder of eye movement is seen in infants, typically with onset between 4 and 12 months of age. The cause is unknown; neuroimaging is required to exclude structural brain abnormalities. Vertical eye movements occur, these are rapid and side-to-side. There may be a head tilt and head nodding. The events resolve with time.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#spasmus
An infection with the Cytomegalovirus that is present from birth.
GARD:0001409
GARD:0001480
ICD10:P35.1
NCIT:C122427
Orphanet:294
SCTID:276701009
UMLS:C0349499
CMV is the commonest fetal viral infection. Fetal CNS infection after 20 weeks gestation can cause malformations of cortical development (including polymycrogyria and schizencephaly), and intracranial calcification in the developing brain. Direct perinatal CNS CMV infection can also occur, with clinical signs manifesting after an incubation period of 2-6 weeks. Overall, 90% of affected infants are asymptomatic at birth, resulting in challenges in early correct diagnosis of CMV neuroinfection. Some of these infants may only present with sensorineural hearing loss at a later date. However, 10% of infants may have early symptoms which may include microcephaly, anaemia, thrombocytopenia, hepatitis, chorioretinitis, neurological impairment and sensorineural hearing impairment. Diagnosis is by detection of CMV DNA in CSF. CMV DNA may also be detected in in urine. Seizures may have onset in the first month of life, in the first year or rarely later. Treatment with gancyclovir may ameliorate the clinical course.
antenatal CMV infection
antenatal cytomegalovirus infection
congenital Cytomegaloviral infection
mother-to-child transmission of cytomegalovirus syndrome
CMV antenatal infection
congenital cytomegalovirus
MONDO:0017409
fetal cytomegalovirus syndrome
true
CMV is the commonest fetal viral infection. Fetal CNS infection after 20 weeks gestation can cause malformations of cortical development (including polymycrogyria and schizencephaly), and intracranial calcification in the developing brain. Direct perinatal CNS CMV infection can also occur, with clinical signs manifesting after an incubation period of 2-6 weeks. Overall, 90% of affected infants are asymptomatic at birth, resulting in challenges in early correct diagnosis of CMV neuroinfection. Some of these infants may only present with sensorineural hearing loss at a later date. However, 10% of infants may have early symptoms which may include microcephaly, anaemia, thrombocytopenia, hepatitis, chorioretinitis, neurological impairment and sensorineural hearing impairment. Diagnosis is by detection of CMV DNA in CSF. CMV DNA may also be detected in in urine. Seizures may have onset in the first month of life, in the first year or rarely later. Treatment with gancyclovir may ameliorate the clinical course.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
Orphanet:306765
Stereotypies (or mannerisms) are repetitive movements, postures, or utterances that may be simple (such as body rocking, head banging) or complex (such as finger movements or wrist flexion/extension). They may be primary (seen in otherwise normal individuals) or secondary (associated with autism, intellectual impairment and other disorders). Stereotypies can be distinguished from epileptic automatisms by the characteristic movements (a video of events can be helpful to aid diagnosis). Epileptic automatisms are expected to occur in a person who has impaired awareness, and are seen in association with generalized absence seizures or focal impaired awareness seizures. Epileptic automatisms can occur in association with preserved awareness, in non dominant temporal lobe seizures, however in this situation, other features of temporal lobe seizures are expected to also co-exist.
MONDO:0017656
motor stereotypies
true
Stereotypies (or mannerisms) are repetitive movements, postures, or utterances that may be simple (such as body rocking, head banging) or complex (such as finger movements or wrist flexion/extension). They may be primary (seen in otherwise normal individuals) or secondary (associated with autism, intellectual impairment and other disorders). Stereotypies can be distinguished from epileptic automatisms by the characteristic movements (a video of events can be helpful to aid diagnosis). Epileptic automatisms are expected to occur in a person who has impaired awareness, and are seen in association with generalized absence seizures or focal impaired awareness seizures. Epileptic automatisms can occur in association with preserved awareness, in non dominant temporal lobe seizures, however in this situation, other features of temporal lobe seizures are expected to also co-exist.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#stereotypies
Orphanet:306768
UMLS:CN227171
paroxysmal movement disorder
MONDO:0017657
rare paroxysmal movement disorder
https://github.com/monarch-initiative/mondo/issues/254
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#paroxysmal
true
Isodicentric chromosome 15 syndrome is a chromosome abnormality that affects many different parts of the body. As the name suggests, people with this condition have an extra chromosome (called an isodicentric chromosome 15 ) which is made of two pieces of chromosome 15 that are stuck together end-to-end. Although the severity of the condition and the associated features vary from person to person, common signs and symptoms include poor muscle tone in newborns; developmental delay; mild to severe intellectual disability; delayed or absent speech; behavioral abnormalities; and seizures . Most cases of isodicentric chromosome 15 syndrome occur sporadically in people with no family history of the condition. Treatment is based on the signs and symptoms present in each person.
GARD:0005153
ICD10:Q99.8
MESH:C580205
Orphanet:3306
SCTID:723332005
This syndrome occurs when there is an inverted duplication of the proximal region of chromosome 15, typically including the unstable region 15q11-q13. A large duplication results in tetrasomy of 15p and partial tetrasomy of 15q. Maternal age at conception is a known risk factor. Patients usually have varying degrees of epilepsy, developmental delays, intellectual impairment, autistic spectrum disorders and minor dysmorphic features. Seizures can include epileptic spasms, and a range of other seizure types (both focal and generalized). This chromosomal abnormality is diagnosed on routine karyotype. FISH is used to confirm that the extra chromosomal material is from chromosome 15q or to establish the diagnosis in the event of an interstitial 15q duplication.
Duplication/inversion type 15q11
Inv dup(15)
Invdup(15)
Isodicentric 15 chromosome
duplication/inversion 15q11
idic(15)
non-distal tetrasomy 15q
non-telomeric tetrasomy 15q
Isodicentric chromosome 15 syndrome
chromosome 15q tetrasomy
inverted duplication 15
tetrasomy 15q
MONDO:0018027
duplication/inversion 15q11
true
true
This syndrome occurs when there is an inverted duplication of the proximal region of chromosome 15, typically including the unstable region 15q11-q13. A large duplication results in tetrasomy of 15p and partial tetrasomy of 15q. Maternal age at conception is a known risk factor. Patients usually have varying degrees of epilepsy, developmental delays, intellectual impairment, autistic spectrum disorders and minor dysmorphic features. Seizures can include epileptic spasms, and a range of other seizure types (both focal and generalized). This chromosomal abnormality is diagnosed on routine karyotype. FISH is used to confirm that the extra chromosomal material is from chromosome 15q or to establish the diagnosis in the event of an interstitial 15q duplication.
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html#inv-dup
New-onset refractory status epilepticus is an acute encephalopathy with inflammation-mediated status epilepticus characterized by an acute refractory status epilepticus, typically of the tonic-clonic type, following prodromal symptoms of confusion, fever, fatigue, headache, symptoms of gastrointestinal or upper respiratory tract infection, behavioral changes or hallucinations. Brain MRI abnormalities and abnormal findings in CSF, including pleocytosis and/or elevated protein levels, are frequently found during acute episode. Treatment-resistant epilepsy, cognitive and psychiatric impairments are usual consequences.
https://www.ncbi.nlm.nih.gov/pubmed/31830676
GARD:0012244
ICD10:G41.8
Orphanet:363558
Norse
De novo cryptogenic refractory multifocal febrile status epilepticus
New onset refractory status epilepticus
MONDO:0018199
new-onset refractory status epilepticus
true
Orphanet:363567
MONDO:0018200
acute encephalopathy with inflammation-mediated status epilepticus
Generalized epilepsy with febrile seizures plus (GEFS+) is a familial epilepsy syndrome in which family members display a seizure disorder from the GEFS+ spectrum which ranges from simple febrile seizures (FS) to the more severe phenotype of myoclonic-astatic epilepsy (MAE) or Dravet syndrome (DS) (see these terms).
https://www.ncbi.nlm.nih.gov/pubmed/32062735
DOID:0060170
ICD10:G40.3
MESH:C565808
NCIT:C122811
OMIMPS:604233
Orphanet:36387
SCTID:699688008
UMLS:C3502809
GEFS+
epilepsy, generalized, with febrile seizures plus
generalized epilepsy with febrile seizures-plus
MONDO:0018214
generalized epilepsy with febrile seizures plus
http://www.case.edu/EpSO.owl#GeneralizedEpilepsyWithFebrileSeizuresPlus
true
A paraneoplastic syndrome that involves the nervous system.
GARD:0007326
ICD9:331.89
MedDRA:10072106
Orphanet:36388
SCTID:192877007
PCD
PNS
nervous system paraneoplastic syndrome
paraneoplastic syndrome of nervous system
paraneoplastic cerebellar degeneration
MONDO:0018215
paraneoplastic neurologic syndrome
Clinical conditions caused by an abnormal chromosome constitution in which there is extra or missing chromosome material (either a whole chromosome or a chromosome segment). (from Thompson et al., Genetics in Medicine, 5th ed, p429)
DOID:0080014
ICD9:758.89
MESH:D025063
NCIT:C34470
Orphanet:68335
SCTID:409709004
Chromosomal Abnormality
chromosomal anomaly
chromosomal disease
autosomal chromosome disorder
autosomal chromosome disorders
chromosomal disorder
chromosomal disorders
chromosome Abnormality disorder
chromosome Abnormality disorders
chromosome disorder
chromosome disorder, autosomal
chromosome disorders, autosomal
disorder, chromosomal
disorder, chromosome
disorder, chromosome Abnormality
disorders, chromosomal
disorders, chromosome
MONDO:0019040
chromosomal anomaly
http://www.case.edu/EpSO.owl#ChromosomalAbnormality
https://www.epilepsydiagnosis.org/aetiology/chromosomal-abnormalities-overview.html
true
A group of disorders present at birth that involve genetic defects leading to disturbances in carbohydrate, lipid, lysosomal storage or amino acid metabolism in the body. The inborn errors of metabolism are typically rare, but this class also encompasses non-rare diseases like hereditary hemochromatosis type 1
https://www.ncbi.nlm.nih.gov/pubmed/28671587
DOID:655
MESH:D008661
MedDRA:10058097
MedDRA:10062018
NCIT:C34816
Orphanet:68367
SCTID:86095007
UMLS:C0025521
congenital metabolic disorder
congenital metabolism disorder
hereditary metabolic disease
inborn error of metabolism
inborn errors of metabolism
inborn metabolism disorder
inherited metabolic disorder
metabolic hereditary disorder
rare inborn errors of metabolism
rare inherited metabolic disorder
rare metabolic disease
MONDO:0019052
inborn errors of metabolism
true
Sandifer syndrome is a paroxysmal dystonic movement disorder occurring in association with gastro-oesophageal reflux, and, in some cases, hiatal hernia.
GARD:0009684
MESH:C537234
MedDRA:10066142
NCIT:C113397
Orphanet:71272
SCTID:230314007
UMLS:C0338465
This syndrome is seen in young children with gastro-oesophageal reflux (with or without vomiting). Events are often seen with or after feeding. Typically there is arching of the back, dystonic posturing of the limbs and turning/tilting of the head. The events may be frequent. The arching of the back and the trigger of events during or after feeding are key features that distinguish this disorder from epileptic seizures. Early treatment of the gastro-oesophageal reflux results in resolution of symptoms.
Sandifer's syndrome
MONDO:0019104
Sandifer syndrome
true
This syndrome is seen in young children with gastro-oesophageal reflux (with or without vomiting). Events are often seen with or after feeding. Typically there is arching of the back, dystonic posturing of the limbs and turning/tilting of the head. The events may be frequent. The arching of the back and the trigger of events during or after feeding are key features that distinguish this disorder from epileptic seizures. Early treatment of the gastro-oesophageal reflux results in resolution of symptoms.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#sandifer
Benign paroxysmal torticollis of infancy (BPTI) is a rare functional disorder characterised by recurrent episodes of torticollic posturing of the head (inclination or tilting of the head to one side) in healthy children.
ICD10:G24.3
Orphanet:71518
SCTID:719521002
UMLS:CN205631
Benign paroxysmal torticollis is considered a migraine variant of infancy and early childhood. Attacks of retro-, lateral or torticollis may last minutes to hours. The infant may have associated pallor, vomiting and appear distressed. Older children may have ataxia. In later childhood affected individuals may develop migraine. Rare cases have been associated with mutations in the CACNA1A gene.
BPTI
Benign paroxysmal torticollis
MONDO:0019113
benign paroxysmal torticollis of infancy
true
Benign paroxysmal torticollis is considered a migraine variant of infancy and early childhood. Attacks of retro-, lateral or torticollis may last minutes to hours. The infant may have associated pallor, vomiting and appear distressed. Older children may have ataxia. In later childhood affected individuals may develop migraine. Rare cases have been associated with mutations in the CACNA1A gene.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#benign-torticollis
Non-24-hour sleep-wake disorder (non-24 disorder), also known as hypernychthemeral syndrome, is a circadian rhythm sleep disorder characterized by non-synchronization to a 24-hour day leading to insomnia and daytime sleepiness with sometimes severe associated manifestations.
GARD:0010949
ICD10:G47.2
ICD10:G47.24
Orphanet:73267
SCTID:230496009
circadian rhythm sleep disorder, free running type
circadian rhythm sleep disorder, free-running type
hypernychthemeral syndrome
non-24
non 24 hour sleep wake disorder
MONDO:0019137
non-24-hour sleep-wake syndrome
http://www.case.edu/EpSO.owl#NonTwentyFourHourSleepWakeSyndrome
Folinic acid-responsive seizures is a very rare neonatal epileptic encephalopathy disorder characterized clinically by myoclonic and clonic, or clonic seizures associated with apnea occurring several hours to 5 days after birth and responding to folinic acid.
ICD10:G40.3
Orphanet:79097
SCTID:717276003
UMLS:CN205780
This metabolic disorder is an allelic condition to pyridoxine dependent epilepsy with similar biochemical markers. Individuals may have a partial pyridoxine response, then may require co-therapy with folinic acid. Research is underway into the mechanism for folinic acid response. In CSF studies of biogenic amines, an unknown peak (peak X) is seen.
Folinic acid responsive seizures
MONDO:0019197
Editor note: TODO request from CHEBI
folinic acid-responsive seizures
true
This metabolic disorder is an allelic condition to pyridoxine dependent epilepsy with similar biochemical markers. Individuals may have a partial pyridoxine response, then may require co-therapy with folinic acid. Research is underway into the mechanism for folinic acid response. In CSF studies of biogenic amines, an unknown peak (peak X) is seen.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#creative
steroid-responsive encephalopathy associated with thyroid disease
GARD:0008570
ICD10:G04.8
MESH:C535841
Orphanet:83601
UMLS:C0393639
SREAT
Hashimoto encephalitis
Hashimoto's encephalitis
Hashimoto's encephalopathy
MONDO:0019385
Editor note: TODO DP for chebi roles
steroid-responsive encephalopathy associated with autoimmune thyroiditis
ICD10:G40.4
Orphanet:86908
SCTID:230407006
HHE syndrome
IHHS
hemiconvulsion-hemiplegia-epilepsy syndrome
MONDO:0019485
idiopathic hemiconvulsion-hemiplegia syndrome
https://www.medlink.com/index.php/article/hemiconvulsion-hemiplegia-epilepsy_syndrome
true
ICD10:G40.3
Orphanet:86909
UMLS:CN206266
This epilepsy syndrome is uncommon. Myoclonic seizures are the only seizure type seen at onset, although infrequent febrile seizures may also occur. Myoclonic seizures may be activated by photic stimulation in some patients, others may have myoclonic seizures that are induced by sudden noise or touch. Cognitive, behavioral and motor difficulties may exist. Seizures are self-limiting, ceasing within 6 months to 5 years from onset. Generalized tonic-clonic seizures may be seen in later life.
benign myoclonic epilepsy of infancy
benign myoclonus epilepsy of infancy
MONDO:0019486
myoclonic epilepsy of infancy
true
This epilepsy syndrome is uncommon. Myoclonic seizures are the only seizure type seen at onset, although infrequent febrile seizures may also occur. Myoclonic seizures may be activated by photic stimulation in some patients, others may have myoclonic seizures that are induced by sudden noise or touch. Cognitive, behavioral and motor difficulties may exist. Seizures are self-limiting, ceasing within 6 months to 5 years from onset. Generalized tonic-clonic seizures may be seen in later life.
https://www.epilepsydiagnosis.org/syndrome/mei-overview.html
ICD10:G40.4
Orphanet:86911
SCTID:230422001
Epilepsy with myoclonic absences should be considered in a child who presents with frequent daily myoclonic absence seizures. At presentation approximately half the children are developmentally and neurologically normal, learning disability is eventually seen in 70% of cases. Other seizure types (generalized tonic-clonic and atonic seizures) occur in the majority of patients. Prognosis is more favorable if myoclonic absence seizures are controlled.
Tassinari syndrome
MONDO:0019487
epilepsy with myoclonic absences
true
Epilepsy with myoclonic absences should be considered in a child who presents with frequent daily myoclonic absence seizures. At presentation approximately half the children are developmentally and neurologically normal, learning disability is eventually seen in 70% of cases. Other seizure types (generalized tonic-clonic and atonic seizures) occur in the majority of patients. Prognosis is more favorable if myoclonic absence seizures are controlled.
https://www.epilepsydiagnosis.org/syndrome/epilepsy-myoclonic-absences-overview.html
An acute infectious process that affects the brain tissue. It is usually caused by viruses and less often by bacteria, parasites, and fungi.
https://www.ncbi.nlm.nih.gov/pubmed/26592968
ICD9:049.8
ICD9:323.4
MESH:D000069544
NCIT:C79550
SCTID:312215006
encephalitis infection
MONDO:0020067
infectious encephalitis
true
ICD10:G40.4
Orphanet:98257
UMLS:CN206974
MONDO:0020070
neonatal epilepsy syndrome
A epilepsy syndrome that occurs between 28 days to one year of life..
ICD10:G40.4
Orphanet:98258
UMLS:CN206975
epilepsy syndrome of infancy
infantile onset epilepsy syndrome
MONDO:0020071
infantile epilepsy syndrome
A epilepsy syndrome that occurs during childhood.
ICD10:G40.4
Orphanet:98259
UMLS:CN206976
childhood epilepsy syndrome
epilepsy syndrome of childhood
pediatric epilepsy syndrome
pediatric epilepsy syndrome
MONDO:0020072
childhood-onset epilepsy syndrome
https://www.epilepsydiagnosis.org/syndrome/epilepsy-syndrome-groupoverview.html#
true
Benign childhood occipital epilepsy, Gastaut type is a rare, genetic neurological disorder characterized by childhood to mid-adolescence onset of frequent, brief, diurnal simple partial seizures which usually begin with visual hallucinations (e.g. phosphenes) and/or ictal blindness and may associate non visual seizures (such as deviation of the eyes, oculoclonic seizures), forced eyelid closure and blinking and sensory hallucinations. Post-ictal headache is common while impairment of consciousness is rare.
ICD10:G40.0
Orphanet:98816
UMLS:CN207128
Childhood occipital epilepsy (Gastaut-type) is a self-limiting childhood epilepsy with onset in later childhood. Seizures are usually easily controlled and remission of seizures occurs within 2-4 years from onset.
late-onset benign childhood occipital epilepsy
MONDO:0020308
benign childhood occipital epilepsy, Gastaut type
true
Childhood occipital epilepsy (Gastaut-type) is a self-limiting childhood epilepsy with onset in later childhood. Seizures are usually easily controlled and remission of seizures occurs within 2-4 years from onset.
https://www.epilepsydiagnosis.org/syndrome/late-childhood-occipital-overview.html
Familial focal epilepsy with variable foci is a rare genetic epilepsy disorder characterized by autosomal dominant lesional and nonlesional focal epilepsy with variable penetrance. Focal seizures emanate from different cortical locations (temporal, frontal, centroparietal, parietal, parietaloccipital, occipital) in different family members, but for each individual a single focus remains constant throughout lifetime. Seizure type (tonic, tonic-clonic or hyperkinetic) and severity varies among family members and tends to decrease (but do not disappear) during adulthood. Many patients have an aura and show automatisms during diurnal seizures whereas others have nocturnal seizures. Most individuals are of normal intelligence but patients with intellectual disability, autistic spectrum disorder and obsessive-compulsive disorder have been described.
GARD:0013295
Orphanet:98820
SCTID:764522009
UMLS:CN207131
This is a hereditary epilepsy, with focal seizures arising in different focal regions in different family members but with each individual in a family having a single focal seizure type. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
FFEVF
familial partial epilepsy with variable foci
MONDO:0020310
familial focal epilepsy with variable foci
true
This is a hereditary epilepsy, with focal seizures arising in different focal regions in different family members but with each individual in a family having a single focal seizure type. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
https://www.epilepsydiagnosis.org/syndrome/ffevf-overview.html
Mesial temporal lobe epilepsy with hippocampal sclerosis is a rare epilepsy syndrome defined by seizures originating in limbic areas of the mesial temporal lobe, particularly in the hippocampus, amygdala, and in the parahippocampal gyrus and its connections, and hippocampal sclerosis, usually unilateral or assymetric. It is frequently associated with an initial precipitating event, such as febrile seizures, hypoxia, intracranial infection or head trauma, most often occurring in the first five years of life, followed by a latent period without seizures. Typical seizures consist of a characteristic aura that is frequently a rising epigastric sensation associated with emotional disturbances, illusions, and autonomic symptoms (widened pupils, palpitations), progressive impairment of consciousness, oro-alimentary automatisms (lip smacking, chewing, licking, tooth grinding), behavioral arrest, head deviation, dystonic postures, hand and verbal automatisms. Seizures are followed by postictal dysfunction. Initially, seizures are easily controlled with antiepileptic drugs, later they frequently become refractory and associated with progressive behavioral changes and memory deficits.
Orphanet:99701
MTLE-HS
MONDO:0020476
mesial temporal lobe epilepsy with hippocampal sclerosis
true
A benign or malignant brain and spinal cord tumor that arises from glial cells (astrocytes, oligodendrocytes, ependymal cells). Tumors that arise from astrocytes are called astrocytic tumors or astrocytomas. Tumors that arise from oligodendrocytes are called oligodendroglial tumors. Tumors that arise from ependymal cells are called ependymomas.
GARD:0006513
MESH:D005910
NCIT:C3059
SCTID:393564001
UMLS:C0017638
glial neoplasm
glial tumor
glioma
neoplasm of neuroglia
neoplasm of the neuroglia
neuroglial neoplasm
neuroglial tumor
tumor of neuroglia
tumor of the neuroglia
MONDO:0021042
glioma
http://www.case.edu/EpSO.owl#Glioma
An autoimmune acute encephalitis caused by antibodies against the glutamate NMDA receptor. It usually affects females and in the majority of cases it is associated with the presence of a tumor, most commonly an ovarian teratoma. The presence of a tumor in patients with this form of encephalitis implies that the latter is a paraneoplastic syndrome. It is manifested with psychiatric symptoms and epileptic seizures. It is a potentially lethal disorder; however, it is usually reversible with the prompt removal of the tumor.
MESH:D060426
NCIT:C94853
Antibodies are directed against the NR1 subunit of the NMDA receptor. Clinical manifestations typically include: A prodrome, this may last several weeks, symptoms include fever, headache, nausea, vomiting and diarrhea , A symptomatic phase, symptoms may include all of the following: Psychiatric and behavioral symptoms: anxiety, bizarre behavior, delirium, paranoia , Insomnia or hypersomnia, Altered level of consciousness Seizures (focal or generalized) , Movement disorders: oral-motor dyskinesias, choreiform movements , Hypoventilation, Autonomic instability: incontinence, tachycardia, hypertension, hyperthermia
anti-NMDA receptor encephalitis
MONDO:0021081
anti-NMDA receptor encephalitis
true
Antibodies are directed against the NR1 subunit of the NMDA receptor. Clinical manifestations typically include: A prodrome, this may last several weeks, symptoms include fever, headache, nausea, vomiting and diarrhea , A symptomatic phase, symptoms may include all of the following: Psychiatric and behavioral symptoms: anxiety, bizarre behavior, delirium, paranoia , Insomnia or hypersomnia, Altered level of consciousness Seizures (focal or generalized) , Movement disorders: oral-motor dyskinesias, choreiform movements , Hypoventilation, Autonomic instability: incontinence, tachycardia, hypertension, hyperthermia
https://www.epilepsydiagnosis.org/aetiology/antibody-mediated-overview.html#anti-nmda
A neoplasm of the nervous system that arises from the neuroepithelial tissues. Representative examples include astrocytic tumors, oligodendroglial tumors, ependymal tumors, and primitive neuroectodermal tumors.
MESH:D018302
NCIT:C3787
ONCOTREE:PRNET
neoplasm of neuroepithelial tissue
neoplasm of neuroepithelium
neoplasm of the neuroepithelium
neuroepithelial neoplasm
neuroepithelial neoplasms
neuroepithelial tissue neoplasm
neuroepithelial tissue tumor
neuroepithelial tumor
neuroepithelial tumors
tumor of neuroepithelial tissue
tumor of neuroepithelium
tumor of the neuroepithelium
primary neuroepithelial tumor
MONDO:0021193
Editor note consider adding grouping class for Neuroepithelial, Perineurial, and Schwann Cell Neoplasm
neuroepithelial neoplasm
A neoplasm (disease) that involves the nervous system.
COHD:444200
NCIT:C3268
neoplasm of nervous system
neoplasm of the nervous system
nervous system neoplasm (disease)
nervous system neoplasms
nervous system tumor
nervous system tumour
tumor of nervous system
tumor of the nervous system
MONDO:0021248
nervous system neoplasm
A grade I or grade II glioma arising from the central nervous system. This category includes pilocytic astrocytoma, diffuse astrocytoma, subependymal giant cell astrocytoma, ependymoma, oligodendroglioma, oligoastrocytoma, and angiocentric glioma.
NCIT:C132067
UMLS:C1997217
low grade glioma
low-grade glioma
MONDO:0021637
low grade glioma
http://www.case.edu/EpSO.owl#LowGradeGlioma
A grade I or grade II astrocytic tumor. This category includes pilocytic astrocytoma (grade I), subependymal giant cell astrocytoma (grade I), and diffuse astrocytoma (grade II).
NCIT:C116342
UMLS:C3898569
low grade astrocytic neoplasm
low grade astrocytic tumor
low-grade astrocytic neoplasm
low-grade astrocytic tumor
MONDO:0021638
low grade astrocytic tumor
A glioma arising from the central nervous system. This category includes diffuse astrocytoma, ependymoma, oligodendroglioma, and oligoastrocytoma.
NCIT:C132505
UMLS:C4330050
WHO grade II glioma
grade II glioma
MONDO:0021639
grade II glioma
Either an isolated neoplasm or a syndrome with neoplasm as a major feature.
neoplastic disease
neoplastic disorder
MONDO:0023370
neoplastic disease or syndrome
A non-neoplastic disorder that is the result of defects of vascular morphogenesis.
MESH:D054079
Cerebral vascular malformations are a heterogeneous group of disorders that may be associated with epilepsy.
vascular malformation
malformation, vascular
malformations, vascular
MONDO:0024291
The majority are present at birth. Some can be acquired.
vascular malformation
http://www.case.edu/EpSO.owl#VascularMalformation
true
Cerebral vascular malformations are a heterogeneous group of disorders that may be associated with epilepsy.
https://www.epilepsydiagnosis.org/aetiology/vascular-malformations-overview.html
A persistent or recurrent pattern of sleep disruption that is primarily due to an alteration of the circadian system or to a misalignment between the endogenous circadian rhythm and the sleep-wake schedule required by an individual's physical environment or social or professional schedule.(DSM IV)
ICD10:G47.2
ICD9:327.30
NCIT:C95071
SCTID:3745000
circadian sleep disorder
disorders of the sleep-wake schedule
sleep-wake schedule disorder
MONDO:0024361
circadian rhythm sleep disorder
Cognitive disorders characterized by an impaired ability to perceive the nature of objects or concepts through use of the sense organs. These include spatial neglect syndromes, where an individual does not attend to visual, auditory, or sensory stimuli presented from one side of the body.
https://www.ncbi.nlm.nih.gov/pubmed/6955943
MESH:D010468
perceptual disturbances
MONDO:0024417
perceptual disorders
true
A disorienting neuropsychological condition that affects perception. People experience size distortion such as micropsia, macropsia, pelopsia, or teleopsia. Size distortion may occur of other sensory modalities.
https://www.ncbi.nlm.nih.gov/pubmed/28116304
MESH:D062026
NCIT:C116362
Teleopsia
MONDO:0024429
Alice in wonderland syndrome
http://www.case.edu/EpSO.owl#Teleopsia
true
A neoplasm that arises from a pre-existing lower grade lesion, or as a result of a primary lesion that has spread to secondary sites, or due to a complication of a cancer treatment.
NCIT:C36255
secondary neoplasm
secondary tumor
MONDO:0024882
Note that we currently treat secondary neoplasms as being neoplastic diseases that are derived from neoplasm; classes such as 'neoplasm', 'carcinoma' are implicitly primary. This may change in future.
secondary neoplasm
A tumor that has spread from its original (primary) site of growth to another site, close to or distant from the primary site. Metastasis is characteristic of advanced malignancies, but in rare instances can be seen in neoplasms lacking malignant morphology.
ICDO:8000/6
NCIT:C3261
Metastatic Tumor
metastatic disease
metastatic neoplasm
metastatic tumor
MONDO:0024883
Note that we currently treat secondary neoplasms as being neoplastic diseases that are derived from neoplasm; classes such as 'neoplasm', 'carcinoma' are implicitly primary. This may change in future.
metastatic neoplasm
http://www.case.edu/EpSO.owl#MetastaticTumor
A group of disorders characterized by ectodermal-based malformations and neoplastic growths in the skin, nervous system, and other organs.
https://www.ncbi.nlm.nih.gov/pubmed/8500435
MESH:D020752
NCIT:C84348
SCTID:78572006
UMLS:C0265316
neurocutaneous syndrome
Phacomatoses
Phacomatosis
Phakomatoses
neurocutaneous disorder
neurocutaneous disorders
neuroectodermal dysplasia
neuroectodermal dysplasia syndrome
neuroectodermal dysplasia syndromes
phakomatosis
syndrome, neurocutaneous
syndrome, neuroectodermal dysplasia
syndromes, neurocutaneous
syndromes, neuroectodermal dysplasia
MONDO:0042983
A number of genetic and acquired diseases come in this category and may affect one or more of these tissues. However, in some conditions, such as von Hippel-Lindau disease, ectodermal presentation is minimal. Editor note: Phakomatoses are inconsistently defined, and there is a lack of consensus about what conditions are included in this category
neurocutaneous syndrome
true
Recurrent seizures causally related to CRANIOCEREBRAL TRAUMA. Seizure onset may be immediate but is typically delayed for several days after the injury and may not occur for up to two years. The majority of seizures have a focal onset that correlates clinically with the site of brain injury. Cerebral cortex injuries caused by a penetrating foreign object (CRANIOCEREBRAL TRAUMA, PENETRATING) are more likely than closed head injuries (HEAD INJURIES, CLOSED) to be associated with epilepsy. Concussive convulsions are nonepileptic phenomena that occur immediately after head injury and are characterized by tonic and clonic movements. (From Rev Neurol 1998 Feb;26(150):256-261; Sports Med 1998 Feb;25(2):131-6)
https://www.ncbi.nlm.nih.gov/pubmed/24761136
GARD:0007437
MESH:D004834
SCTID:75023009
UMLS:C0751126
post-traumatic epilepsy
Epilepsies, post-traumatic
Epilepsies, traumatic
PTE - post-traumatic epilepsy
concussive convulsion
concussive convulsions
convulsion, concussive
convulsions, concussive
disorder, post-traumatic seizure
disorders, post-traumatic seizure
early post traumatic seizures
early post-traumatic seizure
early post-traumatic seizures
epilepsy, post traumatic
epilepsy, traumatic
impact seizure
impact seizures
late post traumatic seizures
late post-traumatic seizure
late post-traumatic seizures
post traumatic seizure disorder
post-traumatic Epilepsies
post-traumatic seizure disorder
post-traumatic seizure disorders
post-traumatic seizure, early
post-traumatic seizure, late
post-traumatic seizures, early
post-traumatic seizures, late
seizure disorder, post traumatic
seizure disorder, post-traumatic
seizure disorders, post-traumatic
seizure, early post-traumatic
seizure, late post-traumatic
seizures, early post-traumatic
seizures, late post-traumatic
traumatic Epilepsies
traumatic epilepsy
MONDO:0043264
post-traumatic epilepsy
true
Discharge of cerebrospinal fluid through a hole through the skull bone most commonly draining from the nose (CEREBROSPINAL FLUID RHINORRHEA) or the ear (CEREBROSPINAL FLUID OTORRHEA).
https://www.ncbi.nlm.nih.gov/pubmed/23551133
GARD:0010166
MESH:D065634
SCTID:230744007
cerebrospinal fluid leak
CSF leak
CSF otorrhea
CSF rhinorrhea
Drainages, cerebrospinal fluid
Leakages, cerebrospinal fluid
Leaks, cerebrospinal fluid
cerebrospinal fluid Drainages
cerebrospinal fluid Leakages
cerebrospinal fluid Leaks
cerebrospinal fluid drainage
cerebrospinal fluid drainage, post traumatic
cerebrospinal fluid drainage, post-traumatic
cerebrospinal fluid drainage, spontaneous
cerebrospinal fluid drainage, traumatic
cerebrospinal fluid leak, post traumatic
cerebrospinal fluid leak, post-traumatic
cerebrospinal fluid leak, spontaneous
cerebrospinal fluid leak, traumatic
cerebrospinal fluid leakage
cerebrospinal fluid leakage, post traumatic
cerebrospinal fluid leakage, post-traumatic
cerebrospinal fluid leakage, spontaneous
cerebrospinal fluid leakage, traumatic
csf - cerebrospinal fluid leak
drainage, cerebrospinal fluid
fluid Drainages, cerebrospinal
fluid Leakages, cerebrospinal
fluid Leaks, cerebrospinal
fluid drainage, cerebrospinal
fluid leak, cerebrospinal
fluid leakage, cerebrospinal
leak, cerebrospinal fluid
leakage, cerebrospinal fluid
spinal CSF leak
spinal cerebrospinal fluid leak
spinal cerebrospinal fluid leak, post traumatic
spinal cerebrospinal fluid leak, post-traumatic
spinal cerebrospinal fluid leak, spontaneous
spinal cerebrospinal fluid leak, traumatic
MONDO:0043327
cerebrospinal fluid leak
true
Acute and chronic (see also brain INJURIES, CHRONIC) injuries to the brain, including the cerebral hemispheres, CEREBELLUM, and brain STEM. Clinical manifestations depend on the nature of injury. Diffuse trauma to the brain is frequently associated with DIFFUSE AXONAL INJURY or COMA, POST-TRAUMATIC. Localized injuries may be associated with NEUROBEHAVIORAL MANIFESTATIONS; HEMIPARESIS, or other focal neurologic deficits.
MESH:D001930
brain injury
injury of brain
brain Traumas
brain trauma
MONDO:0043510
brain injury
https://www.epilepsy.com/learn/about-epilepsy-basics/what-are-risk-factors
true
Mitochondrial diseases (MIDs) are a large group of heterogeneous disorders due to mutations in either mitochondrial DNA (mtDNA) or nuclear DNA (nDNA) genes, the latter encoding proteins involved in mitochondrial function.
MONDO:0044970
mitochondrial disease
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#mitochondrial
true
Mitochondrial diseases (MIDs) are a large group of heterogeneous disorders due to mutations in either mitochondrial DNA (mtDNA) or nuclear DNA (nDNA) genes, the latter encoding proteins involved in mitochondrial function.
https://www.ncbi.nlm.nih.gov/pubmed/27476418
A childhood-onset epilepsy that is characterized by frequent seizures of multiple types, including nocturnal focal motor and fronto-parietal opercular seizures, and daytime focal motor seizures with negative myoclonus and atypical absence seizures. Centrotemporal sharp waves are seen on EEG. During the phase of the epilepsy when seizures are frequent, neuropsychological deficits and motor impairment may be present. These deficits improve when seizures remit.
2018-06-22T22:43:29Z
Atypical childhood epilepsy with centrotemporal spikes (previously known as pseudo-Lennox syndrome, atypical benign partial epilepsy of childhood and atonic-benign childhood epilepsy with centrotemporal spikes) is recognized as an atypical evolution of childhood epilepsy with centrotemporal spikes. This syndrome is self-limiting, but characterized by frequent seizures of multiple types, including nocturnal focal motor and fronto-parietal opercular seizures, and daytime focal motor seizures with negative myoclonus and atypical absence seizures. Centrotemporal sharp waves are seen on EEG. During the phase of the epilepsy when seizures are frequent, neuropsychological deficits and motor impairment may be present. These deficits improve when seizures remit.
atonic-benign childhood epilepsy with centrotemporal spikes
atypical benign partial epilepsy of childhood
pseudo-Lennox syndrome
MONDO:0100020
atypical childhood epilepsy with centrotemporal spikes
true
Atypical childhood epilepsy with centrotemporal spikes (previously known as pseudo-Lennox syndrome, atypical benign partial epilepsy of childhood and atonic-benign childhood epilepsy with centrotemporal spikes) is recognized as an atypical evolution of childhood epilepsy with centrotemporal spikes. This syndrome is self-limiting, but characterized by frequent seizures of multiple types, including nocturnal focal motor and fronto-parietal opercular seizures, and daytime focal motor seizures with negative myoclonus and atypical absence seizures. Centrotemporal sharp waves are seen on EEG. During the phase of the epilepsy when seizures are frequent, neuropsychological deficits and motor impairment may be present. These deficits improve when seizures remit.
https://www.epilepsydiagnosis.org/syndrome/atypical-ects-overview.html
A childhood-onset epilepsy that is characterized by the presence of visually-induced focal occipital lobe seizures. A proportion of patients with this syndrome have developmental delays and learning difficulty.
2018-06-22T22:48:33Z
This epilepsy syndrome has onset in childhood and is characterized by the presence of visually-induced focal occipital lobe seizures. A proportion of patients with this syndrome have developmental delays and learning difficulty.
MONDO:0100021
photosensitive occipital lobe epilepsy
true
This epilepsy syndrome has onset in childhood and is characterized by the presence of visually-induced focal occipital lobe seizures. A proportion of patients with this syndrome have developmental delays and learning difficulty.
https://www.epilepsydiagnosis.org/syndrome/idiophatic-pole-overview.html
An epilepsy sydrome that has an onset during the neonatal or infantile stage of life.
2018-06-22T23:34:03Z
http://orcid.org/0000-0001-8486-0558
MONDO:0100022
neonatal/infantile epilepsy syndrome
This syndrome is characterized by onset of refractory focal seizures in the first year of life, with associated severe encephalopathy. Focal seizures arise independently in both hemispheres and can migrate from one cortical region to another randomly but consecutively in the same seizure. Seizures are often prolonged with episodes of status epilepticus. Prognosis is poor with severe neurological disability and reduced life expectancy, although a milder evolution has been reported in a few children.
2018-06-22T23:54:03Z
https://www.ncbi.nlm.nih.gov/pubmed/32038177
SCTID:733195008
UMLS:C4518639
MONDO:0100025
epilepsy of infancy with migrating focal seizures
true
This group of epilepsies are typically is characterized by onset of seizures from day 1 of life to 5 years (peak 12 months). Both sexes are affected, however the male to female ratio is 1:2. Antecedent (including birth) history, head size, neurological and developmental findings reflect the underlying cause (if known). Myoclonic status epilepticus is often the initial presenting seizure type, however other initial seizure types may also occur. Prognosis is unfavorable with severe neurological and developmental impairments typically seen.
2018-06-22T23:56:39Z
This group of epilepsies are characterized by repeated episodes of myoclonic status epilepticus that occur over prolonged periods (days). The majority of patients have an underlying chromosomal disorder, others have developmental or acquired structural brain abnormalities. The cause is unknown in one fifth of cases.
MONDO:0100026
myoclonic encephalopathy in non-progressive disorder
true
This group of epilepsies are characterized by repeated episodes of myoclonic status epilepticus that occur over prolonged periods (days). The majority of patients have an underlying chromosomal disorder, others have developmental or acquired structural brain abnormalities. The cause is unknown in one fifth of cases.
https://www.epilepsydiagnosis.org/syndrome/menpd-overview.html
These epilepsy syndromes are characterized by the presence of febrile seizures in an individual that may continue past the usual age where these are expected to resolve and/or be accompanied by afebrile seizures that may be generalized seizures (tonic-clonic, atonic, myoclonic, myoclonic-atonic or absence) or focal seizures. Febrile seizures plus and genetic epilepsy with febrile seizures plus are distinguished on the basis of family history. A number of dominantly inherited genes have been linked to these syndromes, with implications for specific genetic counseling, due to the variable severity of the resulting epilepsy in different family members.
2018-06-22T23:58:47Z
https://www.ncbi.nlm.nih.gov/pubmed/25917466
MONDO:0100027
febrile seizures plus, genetic epilepsy with febrile seizures plus
true
An immune epilepsy where the underlying cause is antibody mediated.
2018-06-23T00:52:42Z
Antibody mediated etiologies
MONDO:0100029
antibody mediated epilepsy
https://www.epilepsydiagnosis.org/aetiology/antibody-mediated-overview.html
true
An epilepsy syndrome that has an onset during the adolescent or adult stage of life.
2018-06-23T01:43:18Z
http://orcid.org/0000-0001-8486-0558
MONDO:0100030
adolescent/adult-onset epilepsy syndrome
https://www.epilepsydiagnosis.org/syndrome/epilepsy-syndrome-groupoverview.html
true
A genetic focal epilepsy, with focal sensory auditory seizures seen in family members. Seizures often comprise such mild symptoms that they are undiagnosed. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
2018-06-23T01:47:18Z
Autosomal dominant epilepsy with auditory features (formerly called autosomal dominant partial /lateral temporal epilepsy with auditory features) is a genetic focal epilepsy, with focal sensory auditory seizures seen in family members. Seizures often comprise such mild symptoms that they are undiagnosed. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
autosomal dominant partial /lateral temporal epilepsy with auditory features
MONDO:0100031
autosomal dominant epilepsy with auditory features
http://www.case.edu/EpSO.owl#AutosomalDominantPartialEpilepsyWithAuditoryFeatures
true
Autosomal dominant epilepsy with auditory features (formerly called autosomal dominant partial /lateral temporal epilepsy with auditory features) is a genetic focal epilepsy, with focal sensory auditory seizures seen in family members. Seizures often comprise such mild symptoms that they are undiagnosed. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
https://www.epilepsydiagnosis.org/syndrome/adeaf-overview.html
This syndrome is identified in an individual who has seizures with temporal lobe features with a family history of similar seizures. Seizures often comprise such mild symptoms that they are undiagnosed. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
2018-06-23T01:48:38Z
This syndrome is identified in an individual who has seizures with temporal lobe features with a family history of similar seizures. Seizures often comprise such mild symptoms that they are undiagnosed. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
MONDO:0100032
familial temporal lobe epilepsy syndrome
true
This syndrome is identified in an individual who has seizures with temporal lobe features with a family history of similar seizures. Seizures often comprise such mild symptoms that they are undiagnosed. There are no implications expected for development or learning and seizures are typically infrequent and well controlled.
https://www.epilepsydiagnosis.org/syndrome/other-familial-temporal-lobe-overview.html
Cerebral folate deficiency is defined as a neurological syndrome associated with low CSF 5-methyltetrahydrofolate (5MTHF), the active folate metabolite, in the presence of normal folate metabolism outside the nervous system. Cerebral folate deficiency can result from either disturbed folate transport or from increased folate turnover within the central nervous system.
2018-06-23T19:01:19Z
Cerebral folate deficiency is defined as a neurological syndrome associated with low CSF 5-methyltetrahydrofolate (5MTHF), the active folate metabolite, in the presence of normal folate metabolism outside the nervous system. Cerebral folate deficiency can result from either disturbed folate transport or from increased folate turnover within the central nervous system. Typical features manifest from 4 months of age, with irritability, sleep disturbance, developmental delay, cerebellar ataxia, spastic paraplegia, deceleration of head growth, progressive hearing and visual impairment, dyskinesia and epilepsy (seen in one third of children). Neuroimaging shows progressive atrophy and demyelination. Causes include mutations in receptor-mediated folate receptor protein 1 (FR1), folate antagonists (irreversible binding or antibodies that block folate binding to FR1) and other causes of functional impairment in FR1. Secondary forms of cerebral folate deficiency have been recognized during chronic use of anti-folate (including anti-seizure) medications and in various conditions such as Rett syndrome and Aicardi-Goutieres syndrome. Treatment is with folinic acid, to normalize CSF 5MTHF values.
MONDO:0100034
cerebral folate deficiency
true
Cerebral folate deficiency is defined as a neurological syndrome associated with low CSF 5-methyltetrahydrofolate (5MTHF), the active folate metabolite, in the presence of normal folate metabolism outside the nervous system. Cerebral folate deficiency can result from either disturbed folate transport or from increased folate turnover within the central nervous system. Typical features manifest from 4 months of age, with irritability, sleep disturbance, developmental delay, cerebellar ataxia, spastic paraplegia, deceleration of head growth, progressive hearing and visual impairment, dyskinesia and epilepsy (seen in one third of children). Neuroimaging shows progressive atrophy and demyelination. Causes include mutations in receptor-mediated folate receptor protein 1 (FR1), folate antagonists (irreversible binding or antibodies that block folate binding to FR1) and other causes of functional impairment in FR1. Secondary forms of cerebral folate deficiency have been recognized during chronic use of anti-folate (including anti-seizure) medications and in various conditions such as Rett syndrome and Aicardi-Goutieres syndrome. Treatment is with folinic acid, to normalize CSF 5MTHF values.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#creative
An epilepsy syndrome that has an onset during variable ages and stages of life.
2018-06-23T19:42:08Z
variable age at onset electroclinical syndrome
DOID:0050706
http://orcid.org/0000-0001-8486-0558
MONDO:0100036
variable age onset epilepsy
any structural anomaly of the skin folds covering the front of the eyeball
eyelid abnormalities
abnormal blephara morphology
abnormal blepharon morphology
abnormal eye lid morphology
abnormal eyelids morphology
abnormal palpebra morphology
abnormal palpebrae morphology
eyelid dysplasia
MPheno.ontology
MP:0001340
abnormal eyelid morphology
greater than or fewer than average resting heart beats per minute, usually measured by the number of times the heart ventricles contract per unit of time, usually per minute
MP:0000305
MPheno.ontology
MP:0001629
abnormal heart rate
aberrant reaction of the microcirculation characterized by movement of fluid and leukocytes from the blood into extravascular tissues
inflammation
inflammatory response
MPheno.ontology
MP:0001845
abnormal inflammatory response
greater than expected response to injury, infection, or insult
MPheno.ontology
MP:0001846
increased inflammatory response
local accumulation of fluid, plasma proteins, and leukocytes in the brain
https://www.ncbi.nlm.nih.gov/pubmed/21135885
encephalitis
MPheno.ontology
MP:0001847
brain inflammation
true
breathing that is shallower and/or slower than normal
https://www.ncbi.nlm.nih.gov/pubmed/17984449
HypopneaSyndrome
hypopnoea
MPheno.ontology
MP:0001956
hypopnea
http://www.case.edu/EpSO.owl#HypopneaSyndrome
true
anomaly in the normal reflex of closing the eyes frequently and rapidly
MP:0001478
blinking abnormalities
MPheno.ontology
MP:0001993
abnormal blinking
https://www.epilepsysociety.org.uk/absence-seizures#.XEhRulwzbIU
true
true
reduced variation of beat-to-beat intervals of the heart that occurs in conjunction with the respiratory cycle
https://www.ncbi.nlm.nih.gov/pubmed/26441491
decreased respiratory sinus arrhythmia
MPheno.ontology
reduced heart rate variability
MP:0003929
Heart rate variability (HRV) is the variation of beat-to-beat intervals. A healthy heart has a large HRV, while decreased or absent variability may indicate cardiac disease. HRV also decreases with exercise-induced tachycardia. Heart rate variability (HRV) refers to the beat-to-beat alterations in heart rate. Under resting conditions, the ECG of healthy individuals exhibits periodic variation in R-R intervals. This rhythmic phenomenon, known as respiratory sinus arrhythmia (RSA), fluctuates with the phase of respiration -- cardio-acceleration during inspiration, and cardio-deceleration during expiration. RSA is predominantly mediated by respiratory gating of parasympathetic efferent activity to the heart: vagal efferent traffic to the sinus node occurs primarily in phase with expiration and is absent or attenuated during inspiration. The major reason for the interest in measuring HRV stems from its ability to predict survival after heart attack. Over half a dozen prospective studies have shown that reduced HRV predicts sudden death in patients with MI, independent of other prognostic indicators such as ejection fraction. Reduced HRV appears to be a marker of fatal ventricular arrhythmia. Moreover, a small number of studies have begun to suggest that reduced HRV may predict risk of survival even among individuals free of CHD.
decreased heart rate variability
true
aberrant tissue or circulating concentration of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone
MPheno.ontology
MP:0003953
abnormal hormone level
aberration in the blood or tissue concentration of any of the hormones secreted by the pituitary
MP:0005125
MPheno.ontology
MP:0003965
abnormal pituitary hormone level
anomalous concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis
https://www.ncbi.nlm.nih.gov/pubmed/20696621
abnormal FSH level
abnormal follitropin level
MPheno.ontology
MP:0003967
abnormal follicle stimulating hormone level
true
aberrant levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary
https://www.ncbi.nlm.nih.gov/pubmed/20696621
abnormal ICSH level
abnormal LH level
abnormal interstitial cell-stimulating hormone level
abnormal lutropin level
MPheno.ontology
MP:0003969
abnormal luteinizing hormone level
true
anomaly in the appearance of regularly spaced contractions of the heart due to defects in the frequency, rate, pattern or extent of heart contraction
abnormal cardiac contraction
abnormal heart beat
abnormal heart beating
abnormal heart contraction
abnormal heart rhythm
MPheno.ontology
MP:0004085
abnormal heartbeat
lack of a spontaneously beating heart (usually due to defects in the calcium delivery mechanism or loss of a functional contractile apparatus)
https://www.ncbi.nlm.nih.gov/pubmed/25966854
asystole
MPheno.ontology
MP:0004086
absent heartbeat
true
any anomaly in the normal phenomenon of mild acceleration and slowing of the heart rate that occurs during the respiratory cycle
Fyler:7011
abnormal RSA
abnormal SA
abnormal respiratory sinus arrythmia
MPheno.ontology
abnormal heart rate variability
MP:0004122
abnormal sinus arrhythmia
decreased muscle tension resulting in limpness of the muscles in the resting state, not to be confused with weakness
https://www.ncbi.nlm.nih.gov/pubmed/26394714
hypotonicity
hypotonus
MPheno.ontology
MP:0004144
hypotonia
true
true
anomaly in the average time for the first postnatal eye opening, or failure of eyes to ever open
abnormal timing of eye lid opening
MPheno.ontology
MP:0004874
In mouse, eyelids normally fuse about 5 days prior to birth and reopen about 19 days later (P8-12).
abnormal timing of postnatal eyelid opening
any anomaly in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls
abnormal behaviour
MPheno.ontology
abnormal general behavior
abnormal general behaviour
MP:0004924
abnormal behavior
any anomaly in the standard pattern of rhythmic and rapid fluctuation of electrical potential between parts of the brain, often visualized on an electroencephalogram (EEG); the pattern is often measured to diagnose neurological conditions such as seizure disorders (epilepsy)
https://www.ncbi.nlm.nih.gov/books/NBK390347/
Abnormal EEG Pattern
abnormal ECoG pattern
abnormal EEG pattern
abnormal electrocorticogram pattern
MPheno.ontology
MP:0004994
abnormal brain wave pattern
http://www.case.edu/EpSO.owl#AbnormalEEGPattern
true
eyes remain shut when eyelids are expected to be open
closed eyes
eye lids fail to open
eyelids don't open
eyes fail to open
MPheno.ontology
closed eyes
MP:0005176
In mouse, eyelids normally fuse about 5 days prior to birth and reopen about 19 days later.
eyelids fail to open
true
aberrant amount of ammonia or its compounds in blood, formed in the body during organic decomposition
abnormal ammonia level
https://www.ncbi.nlm.nih.gov/pubmed/26088882
https://www.ncbi.nlm.nih.gov/pubmed/27768938
MPheno.ontology
Hyperammonaemia
MP:0005308
abnormal circulating ammonia level
true
disorder characterized by pathologic startle responses, protective reactions to unanticipated, potentially threatening, stimuli of any type, particularly auditory
https://www.ncbi.nlm.nih.gov/books/NBK2609/
Hyperekplexia is characterised by an exaggeration of the normal startle response and has several genetic associations (GLRA1, GPHN, GLRB, ARHGEF9 and SLC6A5) all linked to dysfunction of the inhibitory glycinergic pathway in the nervous system. Symptoms are evident from the neonatal period or early infancy. Infants are commonly hypertonic, with rigidity, rather than spasticity, which is relieved by sleep. In response to normal touch, noise or any unexpected stimulus they can startle excessively with flexion of the limbs and retraction of the head. A gentle tap using the tip of the examiner's finger on the tip of the individual's nose should trigger an excessive startle that does not habituate with repeated nose taps. The startle may be a rapid jerk or series of jerks, which can mimic a myoclonic, tonic or tonic-clonic seizure. If an EEG is performed during an episode of stiffening, rhythmic muscle action potentials may be misdiagnosed as spikes. A severe startle response may be associated with apnoea and cyanosis. Severe attacks are particularly linked to SLC6A5 mutations and may be linked to sudden infant death in this syndrome. Severe attacks can be aborted by flexing the trunk and neck of the child - the Vigevano manouvre. Clonazepam may be effective in reducing the startle and increased tone. The symptoms tend to resolve after infancy, but adults may have increased startle-induced falls and/or experience nocturnal muscle jerks. There are rarer subtypes of hyperekplexia associated with mutations in the gephyrin and collybistin genes in which epilepsy can co-exist. The onset of excessive startle in later childhood or adult life may be associated with development of autoantibodies to the glycine receptor.
MPheno.ontology
MP:0005604
hyperekplexia
https://rarediseases.org/rare-diseases/hyperekplexia/
true
true
Hyperekplexia is characterised by an exaggeration of the normal startle response and has several genetic associations (GLRA1, GPHN, GLRB, ARHGEF9 and SLC6A5) all linked to dysfunction of the inhibitory glycinergic pathway in the nervous system. Symptoms are evident from the neonatal period or early infancy. Infants are commonly hypertonic, with rigidity, rather than spasticity, which is relieved by sleep. In response to normal touch, noise or any unexpected stimulus they can startle excessively with flexion of the limbs and retraction of the head. A gentle tap using the tip of the examiner's finger on the tip of the individual's nose should trigger an excessive startle that does not habituate with repeated nose taps. The startle may be a rapid jerk or series of jerks, which can mimic a myoclonic, tonic or tonic-clonic seizure. If an EEG is performed during an episode of stiffening, rhythmic muscle action potentials may be misdiagnosed as spikes. A severe startle response may be associated with apnoea and cyanosis. Severe attacks are particularly linked to SLC6A5 mutations and may be linked to sudden infant death in this syndrome. Severe attacks can be aborted by flexing the trunk and neck of the child - the Vigevano manouvre. Clonazepam may be effective in reducing the startle and increased tone. The symptoms tend to resolve after infancy, but adults may have increased startle-induced falls and/or experience nocturnal muscle jerks. There are rarer subtypes of hyperekplexia associated with mutations in the gephyrin and collybistin genes in which epilepsy can co-exist. The onset of excessive startle in later childhood or adult life may be associated with development of autoantibodies to the glycine receptor.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#hyperekplexia
local accumulation of fluid, plasma proteins, and leukocytes in the brain and/or spinal cord
encephalomyelitis
MPheno.ontology
MP:0006082
CNS inflammation
anomaly in the processes involved in the maintenance of an internal equilibrium of various functions or chemical or protein composition of the blood
MP:0000179
MP:0001546
abnormal blood chemistry
blood chemistry abnormalities
MPheno.ontology
MP:0009642
abnormal blood homeostasis
appearance of a neuron or group of neurons in a region where it is not normally found
csmith
2012-09-27T02:37:58Z
https://www.ncbi.nlm.nih.gov/pubmed/25180909
Neuronal Heterotopia
neuronal ectopia
neuronal heterotopia
MPheno.ontology
MP:0011723
ectopic neuron
http://www.case.edu/EpSO.owl#NeuronalHeterotopia
true
any anomaly of the amount of lactate in the blood which is produced from pyruvate by lactate dehydrogenase
https://www.ncbi.nlm.nih.gov/pubmed/28288363
elevated lactate
MP:0013403
Lactate levels in the blood are used as an index of anerobic carbohydrate metabolism.
abnormal circulating lactate level
A change of place or position of part of an organism that does not involve the entire organism [NBO:SMAC]
2011-04-14T01:03:39Z
George Gkoutos
stationary movement
behavior_ontology
body part movement
2011-04-14T01:03:39Z
George Gkoutos
behavior_ontology
whole body movement
"Behavior related to the complex psychophysiological experience of an individual's state of mind as interacting with biochemical (internal) and environmental (external) influences." [wikipedia:Emotions]
2011-04-14T01:03:39Z
George Gkoutos
affective behaviour
mood
behavior_ontology
emotional behavior
The act of moving any of the tissues and hard structures surrounding the mouth other than teeth, jaws or filter structures [NBO:AC]
2011-04-14T01:03:39Z
George Gkoutos
mouth part movement
other moved mouth parts
behavior_ontology
mouth movement
true
"Observable characteristic of behavior associated with the specific movement from place to place of an organism." [NBO:GVG]
2011-04-14T12:58:40Z
George Gkoutos
pathological locomotory behaviour
behavior_ontology
locomotory behavior phenotype
Movement from place to place of an organism." [GO:0007626]
2011-04-14T01:03:39Z
George Gkoutos
locomotion
behavior_ontology
GO:0007626
GO:0008344
locomotory behavior
The act of seizing with teeth or jaws an object or organism so as to grip or break the surface covering [NBO:AC]
2011-04-14T01:03:39Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/7487261
bite
behavior_ontology
biting
true
true
The act of stroking or touching with the tongue [NBO:AC]
2011-04-14T01:03:39Z
George Gkoutos
lick
behavior_ontology
licking
https://www.aboutkidshealth.ca/article?contentid=2060&language=english
true
true
A change in place or position of the portion of the organism containing the brain, mouth and main sense organs [NBO:SMAC]
2011-04-14T01:03:39Z
George Gkoutos
move head
behavior_ontology
head movement
The act of using body parts to pick at, rub and or remove material from exterior covering, e.g., fur, scales, feathers, skin [NBO:SMAC]
2011-04-14T01:03:39Z
George Gkoutos
groom
grooming behaviour
behavior_ontology
hygiene
GO:0007625
grooming behavior
"Loss of power of voluntary movement in a muscle through injury or disease of its nerve supply." [JAX:<new dbxref>]
2011-04-14T01:18:37Z
George Gkoutos
behavior_ontology
HP:0003470
MP:0000753
paralysis
The act of locomoting on limbs with body off the ground such that at least one limb is always touching the ground [NBO:AC]
2011-04-14T01:03:39Z
George Gkoutos
walking
behavior_ontology
GO:0007628
walking behavior
The act of dragging claws or nails over a surface [NBO:AC]
2011-04-14T01:03:39Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/29414563
scratch
scratching behavior
behavior_ontology
scratching
true
true
"Behavior related to a variety of aspects of the relationship between the mind and the world with which it interacts." [wikipedia:Consciousness]
2011-04-14T01:20:02Z
George Gkoutos
behavior_ontology
consciousness behavior
https://www.epilepsybehavior.com/article/S1525-5050(13)00484-8/fulltext
true
The act of bringing an object or substance into the body by swallowing, surrounding or absorbing it [NBO:SMAC]
2011-04-14T01:20:02Z
George Gkoutos
feeding behaviour
behavior_ontology
GO:0007631
feeding behavior
"Moving backwards." [NBO:GVG]
2011-03-31T10:32:40Z
George Gkoutos
behavior_ontology
retropulsion
true
true
"A behavior that occur quickly without control, planning, or consideration of the consequences of that behavior." [NBO:GVG]
2011-03-31T11:08:55Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/16103019
behavior_ontology
impulsive behavior
true
"A behavior associated with the intake of liquid." [NBO:GVG]
2011-03-31T12:40:37Z
George Gkoutos
behavior_ontology
liquid consumption
"A drinking behavior associated with the intake of alcohol." [NBO:GVG]
2011-03-31T12:40:53Z
George Gkoutos
behavior_ontology
alcohol consumption
https://www.epilepsy.org.uk/info/daily-life/alcohol
true
true
2011-03-31T03:00:57Z
George Gkoutos
Rapid eye movement sleep (REM) sleep is the portion of sleep when there are rapid eye movements (REMs).
REM sleep
Sleep Onset Rapid Eye Movement
paradoxical sleep
behavior_ontology
rapid eye movement sleep
http://www.case.edu/EpSO.owl#SleepOnsetRapidEyeMovement
https://n.neurology.org/content/90/15_Supplement/P3.278
true
Rapid eye movement sleep (REM) sleep is the portion of sleep when there are rapid eye movements (REMs).
https://www.medicinenet.com/script/main/art.asp?articlekey=8681
2011-04-04T07:50:00Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/26441491
Excitement is a feeling or situation full of activity, joy, exhilaration, or upheaval
behavior_ontology
excitement
overexcitement
excitement behavior
true
Excitement is a feeling or situation full of activity, joy, exhilaration, or upheaval
https://www.vocabulary.com/dictionary/excitement
"An observable characteristic of the behavior of an organism." [NBO:RH]
2011-04-04T08:51:24Z
George Gkoutos
behavior_ontology
HP:0000708
behavioral phenotype
"Cognitive perception of a sensation by any of the five senses -- vision, touch, smell, taste, and hearing." [NBO:GVG]
2011-04-04T10:00:45Z
George Gkoutos
NBO:0000454
behavior involving perception
perception behavior
behavior_ontology
Example: moving head to watch passing object.
sensation behavior
"The action, reaction, or performance of an organism in response to external or internal stimuli." [GO:GO\:0007610]
2011-04-05T09:53:10Z
George Gkoutos
NBO:0000000
behavior
behaviour
behavior_ontology
GO:0007610
behavior process
"Movement behavior of the body or its parts."
2011-04-05T02:08:47Z
George Gkoutos
behavior_ontology
kinesthetic behavior
"Behavior associated with surface locomotion." [NBO:GVG]
2011-04-06T09:44:37Z
George Gkoutos
behavior_ontology
terrestrial locomotory behavior
"Behavior related to movements that occur independent of planning." [NBO:GVG]
2011-04-06T02:35:38Z
George Gkoutos
behavior_ontology
Movevents listed here are involuntary, but may be also generated by free will, like blinking of the eyelids and respiratory movements.
involuntary movement behavior
"Behavior related to involuntary movement in response to a stimulus." [NBO:GVG]
2011-04-06T02:36:55Z
George Gkoutos
NBO:0000004
reflex behaviour
behavior_ontology
reflexive behavior
"Reflex actions originating in the central nervous system that are exhibited by normal infants in response to particular stimuli." [wikipedia:Primitive_reflexes]
2011-04-06T02:44:15Z
George Gkoutos
infant reflex
infantile reflex
newborn reflex
behavior_ontology
primitive reflex
"An action or movement due to the application of a sudden unexpected stimulus." [wikipedia:Startle_reflex]
2011-04-06T02:55:21Z
George Gkoutos
alarm reaction
behavior_ontology
startle reflex
"Observable characteristic of behavior related to the readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals." [NBO:GVG]
2011-04-07T01:19:38Z
George Gkoutos
behavior_ontology
sleeping behavior phenotype
"A NREM parasomnia characterised by abrupt awakening from sleep with behavior consistent with terror and a temporary inability to regain full consciousness." [NBO:GVG]
2011-04-07T01:25:22Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/books/NBK2609/
Pavor nocturnus
night terror
pavor nocturnus
behavior_ontology
sleep terror
http://www.case.edu/EpSO.owl#NightTerror
true
"An action or movement due to the application of a sudden unexpected loud noise." [NBO:GVG]
2011-04-07T05:31:27Z
George Gkoutos
Acoustic Startle
behavior_ontology
acoustic startle reflex
https://www.epilepsy.com/learn/professionals/about-epilepsy-seizures/reflex-seizures-and-related-epileptic-syndromes/startle
true
true
"A pouting or pursing of the lips that is elicited by light tapping of the closed lips near the midline." [wikipedia:Snout_reflex]
2011-04-07T05:47:28Z
George Gkoutos
Pursing
behavior_ontology
pursing
snout reflex
true
2011-04-08T02:18:40Z
George Gkoutos
behavior_ontology
rhythmic behavior phenotype
"A pathological sleeping behavior related to the initiating or maintaining sleep or of excessive sleepiness and are characterized by a disturbance in the amount, quality, or timing of sleep." [wikipedia:Dyssomnia]
2011-04-08T02:20:42Z
George Gkoutos
behavior_ontology
dyssomnia
2011-04-08T02:21:57Z
George Gkoutos
Intrinsic sleep disorders are disorders that originate or develop within the body or that arise from causes within the body.
behavior_ontology
intrinsic sleep disorder
true
Intrinsic sleep disorders are disorders that originate or develop within the body or that arise from causes within the body.
https://www.ncbi.nlm.nih.gov/pubmed/22033666
"A sleeping behavior phenotype that involve abnormal and unnatural movements, emotions, perceptions, and dreams that occur while falling asleep, sleeping, between sleep stages, or during arousal from sleep." [wikipedia:Parasomnia]
2011-04-08T03:20:06Z
George Gkoutos
Arousal parasomnias including night terrors, sleep walking and confusional arousals are behaviors that arise out of deep non-REM sleep (stages 3 & 4), typically in the first third of the nights sleep. Arousal parasomnias are common and can be regarded as part of normal sleep unless the behavior produces disruption to the individual or their family. An arousal can vary from sitting up in bed and making a few minor vocalisations and then lying down again to a night terror in which the individual rouses, may walk, talk, appear to be agitated or frightened, shout and scream and fail to recognize family members. These events may be misdiagnosed as temporal lobe seizures however confusional arousals and night terrors are typically longer and are only broadly stereotyped. The individual throughout this behavior is still sleeping with slow waves seen on the EEG. Arousal parasomnias tend to occur more at times of anxiety and psychological stress. There is typically no recollection of the arousal, however dramatic it is. There is often a family history suggesting a genetic predisposition. If arousals are occurring more than once a night or every night then the differential of nocturnal frontal lobe seizures should be considered. Video, including the onset of the event, is usually the most useful investigation as ictal EEG is often obscured by movement artefact and deep frontal lobe discharges may not be visible on surface EEG (the ictal EEG may be normal). Video of multiple events will reveal the stereotyped nature of epileptic seizures. History from the individual may reveal retained awareness during the event in frontal lobe seizures.
Parasomnias
behavior_ontology
parasomnia
http://www.case.edu/EpSO.owl#Parasomnias
true
true
Arousal parasomnias including night terrors, sleep walking and confusional arousals are behaviors that arise out of deep non-REM sleep (stages 3 & 4), typically in the first third of the nights sleep. Arousal parasomnias are common and can be regarded as part of normal sleep unless the behavior produces disruption to the individual or their family. An arousal can vary from sitting up in bed and making a few minor vocalisations and then lying down again to a night terror in which the individual rouses, may walk, talk, appear to be agitated or frightened, shout and scream and fail to recognize family members. These events may be misdiagnosed as temporal lobe seizures however confusional arousals and night terrors are typically longer and are only broadly stereotyped. The individual throughout this behavior is still sleeping with slow waves seen on the EEG. Arousal parasomnias tend to occur more at times of anxiety and psychological stress. There is typically no recollection of the arousal, however dramatic it is. There is often a family history suggesting a genetic predisposition. If arousals are occurring more than once a night or every night then the differential of nocturnal frontal lobe seizures should be considered. Video, including the onset of the event, is usually the most useful investigation as ictal EEG is often obscured by movement artefact and deep frontal lobe discharges may not be visible on surface EEG (the ictal EEG may be normal). Video of multiple events will reveal the stereotyped nature of epileptic seizures. History from the individual may reveal retained awareness during the event in frontal lobe seizures.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#parasomnias
"An intrinsic sleep disorder characterised by breathing abnormalities." [NBO:GVG]
2011-04-08T03:27:40Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/29287215
SBD
sleep-disordered breathing
sleep-related breathing disorder
behavior_ontology
sleep breathing disorder
true
"A type of parasomnia that occurs during NREM sleep." [NBO:GVG]
2011-04-08T03:37:10Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/10996566
behavior_ontology
NREM parasomnia
true
"A NREM parasomnia characterised by talking during sleep." [NBO:GVG]
2011-04-09T10:02:28Z
George Gkoutos
SleepTalking
sleep-talking
behavior_ontology
somniloquy
http://www.case.edu/EpSO.owl#SleepTalking
https://www.epilepsy.com/learn/challenges-epilepsy/sleep-and-epilepsy/sleep-disorders
true
"A type of parasomnia that occurs during REM sleep." [NBO:GVG]
2011-04-09T10:07:11Z
George Gkoutos
behavior_ontology
REM parasomnia
"A REM parasomnia characterised by periods of inability to perform voluntary movements either when going to sleep or when waking up." [wikipedia:Sleep_paralysis]
2011-04-09T10:24:27Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/19162231
behavior_ontology
sleep paralysis
http://www.case.edu/EpSO.owl#SleepParalysis
true
The act of moving food from the mouth cavity to the esophagus through coordinated muscular movements [NBO:AC]
2011-04-10T10:39:39Z
George Gkoutos
swallow
behavior_ontology
swallowing
https://www.mayoclinic.org/diseases-conditions/temporal-lobe-seizure/symptoms-causes/syc-20378214
true
true
"Observable characteristic of behavior related to the movement of the body's muscles, tendons, and joints." [NBO:GVG]
2011-04-14T08:31:34Z
George Gkoutos
behavior_ontology
kinesthetic behavior phenotype
Movement of the head in the vertical plane. [NBO:GVG]
2011-04-14T08:39:38Z
George Gkoutos
head nodding
nod head
nods
behavior_ontology
head bobbing
https://www.epilepsy.com/learn/types-seizures/atonic-seizures
true
"A reflex that elucidates goose bumps (bumps on a person's skin at the base of body hairs) which may involuntarily develop when a person is cold or experiences strong emotions such as fear, awe, admiration or sexual arousal" [wikipedia:Goose_bumps]
2011-04-14T10:15:17Z
George Gkoutos
horripilation
piloerection
behavior_ontology
pilomotor reflex
true
"An involuntary rhythmical, oscillatory movement of a body part." [NBO:GVG]
2011-04-14T11:13:39Z
George Gkoutos
quivering
shivering
trembling
behavior_ontology
HP:0001337
MP:0000745
tremor
https://genetic.org/wp-content/uploads/2017/07/Elizabeth-Berry-Kravis-seizures-and-tremor-AXYS-2017.pdf
true
true
"Behaviour related to cognitive processes." [NBO:JH]
2011-04-14T03:51:13Z
George Gkoutos
behavior_ontology
cognitive behavior
"Perception in the absence of a stimulus." [wikipedia:Hallucination]
2011-04-14T03:52:31Z
George Gkoutos
Hallucinations in psychiatric disorders are commonly complex phenomena involving multiple sensory modalities, in contrast to the elementary sensory hallucinations (colours/flashes of light, ringing/buzzing sounds etc) that occur in focal epileptic seizures. Complex hallucinations with hallucinations of seeing people or scenes, hearing voices or formed music and distortions of visual perception may occur as an uncommon manifestation of focal seizures. The episodic nature of these phenomena, together with the presence of other features of a seizure and the interval return to a normal baseline helps distinguish these events from psychiatric hallucinations.
behavior_ontology
Hallucinations in psychiatric disorders
HP:0000738
hallucination
true
Hallucinations in psychiatric disorders are commonly complex phenomena involving multiple sensory modalities, in contrast to the elementary sensory hallucinations (colours/flashes of light, ringing/buzzing sounds etc) that occur in focal epileptic seizures. Complex hallucinations with hallucinations of seeing people or scenes, hearing voices or formed music and distortions of visual perception may occur as an uncommon manifestation of focal seizures. The episodic nature of these phenomena, together with the presence of other features of a seizure and the interval return to a normal baseline helps distinguish these events from psychiatric hallucinations.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#hallucinations
"A form of hallucination that involves perceiving images without visual stimulus." [NBO:GVG]
2011-04-14T03:54:02Z
George Gkoutos
Polyopia
paracusia
behavior_ontology
HP:0008765
visual hallucination
http://www.case.edu/EpSO.owl#Polyopia
true
"A form of hallucination that involves perceiving sounds without auditory stimulus." [wikipedia:Auditory_hallucination]
2011-04-14T03:56:24Z
George Gkoutos
behavior_ontology
HP:0002367
auditory hallucination
https://emedicine.medscape.com/article/1184509-clinical
true
true
"A form of hallucination that involves perceiving odors without odor stimulus." [NBO:GVG]
2011-04-14T03:58:15Z
George Gkoutos
phantosmia
behavior_ontology
olfactory hallucination
http://www.tasteandsmell.com/june2013.htm
true
true
"Observable characteristic of behavior related to movements that occur independent of planning." [NBO:GVG]
2011-05-27T11:56:52Z
George Gkoutos
behavior_ontology
involuntary movement behavior phenotype
"Observable characteristic of behavior related to movements executed with intent." [NBO:GVG]
2011-05-27T11:57:12Z
George Gkoutos
behavior_ontology
voluntary movement behavior phenotype
"A type of seizure generated by sudden sensor stimulation caused by the environment." [NBO:GVG]
2011-05-28T11:07:41Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/books/NBK2596/
environmental epilepsy
reflex epilepsy
behavior_ontology
MP:0009358
reflex seizure
true
"A type of seizure associated with a significant rise in body temperature." [wikpedia:http\://en.wikipedia.org/wiki/Febrile_seizure]
2011-05-27T05:13:26Z
George Gkoutos
febrile convulsion
fever fit
behavior_ontology
HP:0002373
febrile seizure
https://www.epilepsy.com/learn/about-epilepsy-basics/what-are-risk-factors
https://www.mayoclinic.org/diseases-conditions/febrile-seizure/symptoms-causes/syc-20372522
true
true
"Benign rolandic epilepsy is characterized by either simple partial seizures involving the mouth and face or generalized tonic-clonic seizures." [wikipedia:http\://en.wikipedia.org/wiki/Rolandic_epilepsy]
2011-05-27T05:24:49Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/32086099
benign (childhood) epilepsy with centrotemporal (EEG) spikes
behavior_ontology
benign rolandic epilepsy
true
"A temporal lobe epilepsy arises in the neocortex on the outer surface of the temporal lobe of the brain." [wikipedia:http\://en.wikipedia.org/wiki/Temporal_lobe_epilepsy]
2011-05-27T05:31:27Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6039834/
LTLE
behavior_ontology
lateral temporal lobe epilepsy
http://www.case.edu/EpSO.owl#LateralTemporalEpilepsy
true
2011-05-27T05:39:40Z
George Gkoutos
If seizures are prolonged, or occur in a series, there is an increased risk of status epilepticus. The term literally means a continuous state of seizure. Status epilepticus is usually defined as 30 minutes of uninterrupted seizure activity.
behavior_ontology
continuous seizure
true
If seizures are prolonged, or occur in a series, there is an increased risk of status epilepticus. The term literally means a continuous state of seizure. Status epilepticus is usually defined as 30 minutes of uninterrupted seizure activity.
https://epilepsychicago.org/epilepsy/seizure-types/status-epilepticus/
"Paroxysmal events that mimic an epileptic seizure but do not involve abnormal, rhythmic discharges of cortical neurons." [wikipedia:http\://en.wikipedia.org/wiki/Non-epileptic_seizure]
2011-05-27T05:47:13Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/21633606
https://www.ncbi.nlm.nih.gov/pubmed/31617494
non-epileptic seizure
behavior_ontology
provoked seizure
true
"A type of seizure of psychological origin that superficially resembles an epileptic seizure, but without the characteristic electrical discharges associated with epilepsy." [wikipedia:http\://en.wikipedia.org/wiki/Psychogenic_non-epileptic_seizures]
2011-05-27T05:50:08Z
George Gkoutos
PNES
non-epileptic attack disorder
behavior_ontology
psychogenic non-epileptic seizure
https://www.epilepsysociety.org.uk/non-epileptic-seizures#.XJhlBXduLIV
true
"An absence seizure induced by hyperventilation." [NBO:GVG]
2011-05-28T11:59:14Z
George Gkoutos
A typical absence seizure is a generalized seizure with abrupt onset and offset of altered awareness which can vary in severity (see specific syndromes). Memory for events during the seizures is usually impaired although there may be some retained awareness particularly for adolescents. Clonic movements of eyelids, head, eyebrows, chin, perioral or other facial parts may occur, most typically at 3Hz. Myoclonus of limbs can rarely occur. Oral and manual automatisms are common and there may be perseveration of behaviors occurring prior to seizure onset. Absence seizures were previously known as 'petit mal' seizures. Absence status epilepticus can occur.
behavior_ontology
typical absence seizure
true
A typical absence seizure is a generalized seizure with abrupt onset and offset of altered awareness which can vary in severity (see specific syndromes). Memory for events during the seizures is usually impaired although there may be some retained awareness particularly for adolescents. Clonic movements of eyelids, head, eyebrows, chin, perioral or other facial parts may occur, most typically at 3Hz. Myoclonus of limbs can rarely occur. Oral and manual automatisms are common and there may be perseveration of behaviors occurring prior to seizure onset. Absence seizures were previously known as 'petit mal' seizures. Absence status epilepticus can occur.
https://www.epilepsydiagnosis.org/seizure/absence-typical-overview.html
"An absence seizure not induced by hyperventilation." [NBO:GVG]
2011-05-28T11:59:31Z
George Gkoutos
An atypical absence seizure has less abrupt onset and offset of loss of awareness than typical absence seizures. They are often associated with other features such as loss of muscle tone of the head, trunk or limbs (often a gradual slump) and subtle myoclonic jerks. Atypical absence seizures often occur in individuals with intellectual impairment.The loss of awareness may be minimal with the patient continuing an activity, but more slowly or with mistakes.
behavior_ontology
HP:0007270
atypical absence seizure
true
An atypical absence seizure has less abrupt onset and offset of loss of awareness than typical absence seizures. They are often associated with other features such as loss of muscle tone of the head, trunk or limbs (often a gradual slump) and subtle myoclonic jerks. Atypical absence seizures often occur in individuals with intellectual impairment.The loss of awareness may be minimal with the patient continuing an activity, but more slowly or with mistakes.
https://www.epilepsydiagnosis.org/seizure/absence-atypical-overview.html
"Purposeless repetitive motor activities that often occur during a seizure." [NBO:GVG]
2011-05-28T12:14:35Z
George Gkoutos
behavior_ontology
Automatisms may occur during complex partial or absence seizures.
automatism
true
true
"An automatism characterised by involuntary movement of the limbs or body such as fumbling, picking and rubbing." [NBO:GVG]
2011-05-28T12:17:42Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/29325826
behavior_ontology
Fumbling
gestural automatism
true
true
"A type of seizure induced by the administration of a drug." [NBO:GVG]
2011-05-28T12:32:11Z
George Gkoutos
behavior_ontology
drug induced seizure
http://www.medlink.com/article/drug-induced_seizures
true
"A type of seizure induced by termination of drug administration." [NBO:GVG]
2011-05-28T12:35:22Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/31832260
behavior_ontology
drug withdrawal induced seizure
true
"A type of seizure induced by termination of alcohol administration." [NBO:GVG]
2011-05-28T01:19:06Z
George Gkoutos
behavior_ontology
alcohol withdrawal induced seizure
https://www.fairview.org/patient-education/115703EN
true
"A type of epilepsy that is characterised a sudden burst of energy, usually in the form of laughing." [NBO:GVG]
2011-05-28T11:12:42Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/15528919
gelastic seizure
behavior_ontology
HP:0010821
gelastic epilepsy
true
"A type of epilepsy that is characterised a sudden paroxysmal crying." [NBO:<new dbxref>, NBO:GVG]
2011-05-28T11:18:45Z
George Gkoutos
https://www.ncbi.nlm.nih.gov/pubmed/29170920
dacrystic seizure
behavior_ontology
HP:0010820
dacrystic epilepsy
true
2012-03-17T09:51:17Z
gkoutos
behavior_ontology
jaw movement
The act of displacing part or all of the tongue from its current position [NBO:SMAC]
2012-03-17T09:52:25Z
gkoutos
behavior_ontology
tongue movement
"Behavior related to the intake of substances." [NBOC:GVG]
George Gkoutos
ingest
consumption behavior
GC_ID:1
ncbi_taxonomy
all
root
https://www.ncbi.nlm.nih.gov/pubmed/22938964
GC_ID:1
A rodent belonging to subfamily Gerbillinae, Meriones unguiculatus is the most common species of the gerbil subfamily. The Mongolian gerbil was first imported into the United States in 1954 by Dr. Victor Schwentker. Most gerbils used in pre-clinical research are agouti-colored and comprise less than 0.5% of total rodent usage annually.
Mongolian gerbil
Mongolian jird
ncbi_taxonomy
Meriones unguiculatus
true
A rodent belonging to subfamily Gerbillinae, Meriones unguiculatus is the most common species of the gerbil subfamily. The Mongolian gerbil was first imported into the United States in 1954 by Dr. Victor Schwentker. Most gerbils used in pre-clinical research are agouti-colored and comprise less than 0.5% of total rodent usage annually.
http://purl.obolibrary.org/obo/NCIT_C77100
NCBITaxon:85055
https://www.ncbi.nlm.nih.gov/pubmed/28332054
GC_ID:1
Mus Musculus is the polytypic species which encompasses all the subspecies and geographical or chromosomal races of the house mouse.
house mouse
mouse
ncbi_taxonomy
mice C57BL/6xCBA/CaJ hybrid
Mus musculus
true
Mus Musculus is the polytypic species which encompasses all the subspecies and geographical or chromosomal races of the house mouse.
https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/mus-musculus
NCBITaxon:42821
https://www.ncbi.nlm.nih.gov/pubmed/22938964
GC_ID:1
The baboon species, Papio papio.
Guinea baboon
Papio papio sensu Groves
baboon
ncbi_taxonomy
Papio cynocephalus papio
Papio hamadryas papio
Papio papio
true
The baboon species, Papio papio.
http://purl.obolibrary.org/obo/NCIT_C161028
NCBITaxon:36465
https://www.ncbi.nlm.nih.gov/pubmed/29933054
GC_ID:1
The common rat, Rattus norvegicus, often used as an experimental organism.
Norway rat
brown rat
rat
rats
ncbi_taxonomy
Rattus norvegicus8
Rattus norwegicus
Rattus norvegicus
true
The common rat, Rattus norvegicus, often used as an experimental organism.
http://purl.obolibrary.org/obo/NCIT_C14266
GC_ID:1
A cellular organism is an organism that contains one or more cells.
ncbi_taxonomy
biota
cellular organisms
A cellular organism is an organism that contains one or more cells.
http://semanticscience.org/resource/SIO_010377
GC_ID:1
PMID:23020233
PMID:30257078
One of the three domains of life (the others being bacteria and archea), also called Eukarya. These are organisms whose cells are enclosed in membranes and possess a nucleus. They comprise almost all multicellular and many unicellular organisms, and are traditionally divided into groups (sometimes called kingdoms) including Animals; plants; fungi; and various algae and other taxa that were previously part of the old kingdom Protista.
eucaryotes
eukaryotes
ncbi_taxonomy
Eucarya
Eucaryotae
Eukarya
Eukaryotae
eukaryotes
Eukaryota
One of the three domains of life (the others being bacteria and archea), also called Eukarya. These are organisms whose cells are enclosed in membranes and possess a nucleus. They comprise almost all multicellular and many unicellular organisms, and are traditionally divided into groups (sometimes called kingdoms) including Animals; plants; fungi; and various algae and other taxa that were previously part of the old kingdom Protista.
http://tolweb.org/Eukaryotes
GC_ID:1
Warm-blooded vertebrate animals belonging to the class Mammalia, including all that possess hair and suckle their young.
mammals
ncbi_taxonomy
mammals
Mammalia
Warm-blooded vertebrate animals belonging to the class Mammalia, including all that possess hair and suckle their young.
https://www.ncbi.nlm.nih.gov/mesh/D008322
GC_ID:1
flatworm
flatworms
ncbi_taxonomy
flatworms
Platyhelminthes
NCBITaxon:133821
https://www.ncbi.nlm.nih.gov/pubmed/30711777
GC_ID:1
Taenia solium is the cause of neurocysticercosis, which has several forms including parenchymal, subarachnoid, ventricular, and spinal forms.
pig tapeworm
pork tapeworm
ncbi_taxonomy
Cysticercus cellulosae
Taenia solium
true
Taenia solium is the cause of neurocysticercosis, which has several forms including parenchymal, subarachnoid, ventricular, and spinal forms.
https://www.sciencedirect.com/topics/medicine-and-dentistry/taenia-solium
GC_ID:1
nematode
nematodes
roundworm
roundworms
ncbi_taxonomy
Nemata
nematodes
Nematoda
https://www.ncbi.nlm.nih.gov/pubmed/22938964
GC_ID:1
Caenorhabditis elegans is a small, free-living, nematode worm, which has become established as a standard model organism for a great variety of genetic investigations, being especially useful for studying developmental biology, cell biology and neurobiology.
roundworm
ncbi_taxonomy
Rhabditis elegans
Caenorhabditis elegans
true
Caenorhabditis elegans is a small, free-living, nematode worm, which has become established as a standard model organism for a great variety of genetic investigations, being especially useful for studying developmental biology, cell biology and neurobiology.
https://www.sciencedirect.com/topics/neuroscience/caenorhabditis-elegans
GC_ID:1
arthropods
ncbi_taxonomy
arthropods
Arthropoda
NCBITaxon:2267365
https://www.ncbi.nlm.nih.gov/pubmed/22938964
GC_ID:1
Drosophila melanogaster is a small, common fly found near unripe and rotted fruit. It has been in use for over a century to study genetics and behavior.
fruit fly
ncbi_taxonomy
Drosophila melangaster
Sophophora melanogaster
Drosophila melanogaster
true
Drosophila melanogaster is a small, common fly found near unripe and rotted fruit. It has been in use for over a century to study genetics and behavior.
http://depts.washington.edu/cberglab/wordpress/outreach/an-introduction-to-fruit-flies/
GC_ID:1
Animals having a vertebral column, members of the phylum Chordata, subphylum Craniata comprising mammals, birds, reptiles, amphibians, and fishes.
Vertebrata
vertebrates
ncbi_taxonomy
vertebrates
Vertebrata <vertebrates>
Animals having a vertebral column, members of the phylum Chordata, subphylum Craniata comprising mammals, birds, reptiles, amphibians, and fishes.
https://www.ncbi.nlm.nih.gov/mesh/D014714
GC_ID:1
amphibians
ncbi_taxonomy
amphibians
Amphibia
https://www.ncbi.nlm.nih.gov/pubmed/23929939
GC_ID:1
The albino Xenopus laevis tadpole is a transparent vertebrate used extensively for in vivo imaging of neuronal growth and synaptogenesis.
African clawed frog
clawed frog
common platanna
platanna
ncbi_taxonomy
Bufo laevis
Xenopus leavis
Xenopus laevis
true
The albino Xenopus laevis tadpole is a transparent vertebrate used extensively for in vivo imaging of neuronal growth and synaptogenesis.
https://www.ncbi.nlm.nih.gov/pubmed/22938964
GC_ID:1
primate
ncbi_taxonomy
Primata
primates
Primates
NCBITaxon:36502
https://www.ncbi.nlm.nih.gov/pubmed/13268119
GC_ID:1
Macaca mulatta or Rhesus macaques are frequently used models of human disease in biomedical research than any other nonhuman primate as their genomes share approximately 93.5% identity with that of humans.
Rhesus monkey
rhesus macaque
rhesus macaques
rhesus monkeys
ncbi_taxonomy
Macaca mulatta
Defintion modified
true
https://www.ncbi.nlm.nih.gov/pubmed/30219655
GC_ID:1
The primate species of mammal to which modern humans belong.
human
man
ncbi_taxonomy
Home sapiens
Homo sampiens
Homo sapeins
Homo sapian
Homo sapians
Homo sapien
Homo sapience
Homo sapiense
Homo sapients
Homo sapines
Homo spaiens
Homo spiens
Humo sapiens
Homo sapiens
true
The primate species of mammal to which modern humans belong.
https://www.medicinenet.com/script/main/art.asp?articlekey=40191
GC_ID:1
rodent
ncbi_taxonomy
rodents
Rodentia
A sudden loss of consciousness with loss of postural tone not related to anesthesia with high risk characteristics. High risk characteristics include non-ischemic dilated cardiomyopathy, or ischemic heart disease with significant ventricular dysfunction, hypertrophic cardiomyopathy, Brugada Syndrome, or Long QT Syndrome. (ACC)
C100018
Finding
Syncope with High Risk Cardiac Characteristics
C3272263
CDISC
A sudden loss of consciousness with loss of postural tone not related to anesthesia with high risk characteristics. High risk characteristics include non-ischemic dilated cardiomyopathy, or ischemic heart disease with significant ventricular dysfunction, hypertrophic cardiomyopathy, Brugada Syndrome, or Long QT Syndrome.
https://www.ncbi.nlm.nih.gov/pubmed/23190285
SYNCOPE WITH HIGH RISK CHARACTERISTICS
Syncope with High Risk Cardiac Characteristics
cardiac syncope
Syncope with High Risk Cardiac Characteristics
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#longqt
true
true
An injury sustained to a neonate during the birthing process.
C101035
Finding
Neonatal Injury Related to Birth
C0005604
CPTAC
NICHD
Injury to a newborn incurred during labor and delivery.
Birth Injury
Birth Injury
Birth Trauma
Neonatal Birth Injury
Neonatal Injury Related to Birth
Neonatal Injury Related to Birth
http://www.case.edu/EpSO.owl#BirthInjury
A standardized rating scale which is used as a measure of health outcome. This instrument is a descriptive system consisting of 5 dimensions: mobility, self-care, usual activity, pain/discomfort, and anxiety/depression. Each dimension has 5 levels ranging from no problem to extreme problem or incapable, which are assessed by the patient.
C102117
Intellectual Product
European Quality of Life Five Dimension Five Level Scale Questionnaire
C3640517
CDISC
European Quality of Life Five Dimension Five Level Scale (EQ-5D-5L) (Copyright 2009 EuroQol Group. EQ-5D is a trade mark of the EuroQol Group).
https://www.ncbi.nlm.nih.gov/pubmed/24679945
EQ-5D-5L
EQ5D02
European Quality of Life Five Dimension Five Level Scale Questionnaire
European Quality of Life Five Dimension Five Level Scale Questionnaire
true
A standardized, multipurpose, general health survey developed by John E. Ware and copyrighted by Quality Metric Inc. and the Medical Outcomes Trust in 1996 and 2000 which is used to assess the patient's functional health and overall well-being. This second version contains 36 questions that refer to the patient's symptoms or status within the past four weeks and can be completed by the patient. For each question the patient must choose from five different responses.
C102122
Intellectual Product
Short Form 36 Health Survey Standard, US Version 2.0 Questionnaire
C3640521
CDISC
The Short Form 36 Health Survey Standard, US Version 2.0 (SF36 v2.0 Standard) (copyright 1996, 2000 by Quality Metric Incorporated and Medical Outcomes Trust. All rights reserved).
https://www.ncbi.nlm.nih.gov/pubmed/22512895
Medical Outcomes Survey 36-Item Short-Form Health Survey
SF36 V2.0 STANDARD
SF36 v2.0 Standard
SF363
Short Form 36 Health Survey
Short Form 36 Health Survey Standard, US Version 2.0 Questionnaire
Short Form 36 Health Survey Standard, US Version 2.0 Questionnaire
true
A standardized rating scale used to assess an individual's general level of daytime sleepiness.
C103517
Intellectual Product
Epworth Sleepiness Scale Questionnaire
C3541276
CDISC
Epworth Sleepiness Scale (ESS) (copyright Murray W. Johns, 1990-1997. All rights reserved.).
https://www.ncbi.nlm.nih.gov/pubmed/11081816
ESS
ESS01
Epworth Sleepiness Scale
Epworth Sleepiness Scale Questionnaire
Epworth Sleepiness Scale Questionnaire
true
A seven item validated, self-reported questionnaire for screening, and assessing the severity of generalized anxiety disorder in clinical practice and research settings.
C103519
Intellectual Product
Generalized Anxiety Disorder - 7 Questionnaire
C3641330
CDISC
Generalized Anxiety Disorder - 7 (GAD-7) (Spitzer RL, Kroenke K, Williams JBW, Lowe B. A brief measure for assessing generalized anxiety disorder: The GAD-7. Arch Intern Med 2006; 166:1092-1097).
https://www.ncbi.nlm.nih.gov/pubmed/28064112
GAD-7
GAD01
General Anxiety Disorder-7
General Anxiety Disorder-7 Questionnaire
Generalized Anxiety Disorder - 7 Questionnaire
Generalized Anxiety Disorder 7-item Scale (GAD-7)
Generalized Anxiety Disorder - 7 Questionnaire
true
A standardized survey developed and copyrighted by A. S. Zigmond and R. P. Snaith in 1983, 1992, 1994 and published in the Acta Psychiatrica Scandinavica journal (A.S. Zigmond and R.P. Snaith. The Hospital Anxiety and Depression Scale. Acta psychiart. scand. 1983, 67:361-370) which is used to detect depression and anxiety in individuals in a hospital or medical outpatient clinic. This instrument is a self-administered questionnaire consisting of 14 items that assess how the individual has felt over the past week. Each item as 4 response options that are associated with a score of 0 to 3.
C103520
Intellectual Product
Hospital Anxiety and Depression Scale Questionnaire
C3539657
CDISC
Hospital Anxiety and Depression Scale (HADS) (copyright 1983, 1992, 1994 by R.P. Snaith and A.S. Zigmond. All rights reserved.).
https://www.ncbi.nlm.nih.gov/pubmed/30599368
HADS
HADS Questionnaire
HADS01
Hospital Anxiety and Depression Scale Questionnaire
Hospital Anxiety and Depression Scale Questionnaire (HADS)
Hospital Anxiety and Depression Scale Questionnaire
true
A 9-item scale using each of the 9 DSM-IV criteria with self-reported frequency of "0" (not at all) to "3" (nearly every day). One of the most widely used instruments to assess depression, PHQ-9 scores of 5, 10, 15, and 20 represent mild, moderate, moderately severe, and severe depression, respectively.
C103526
Intellectual Product
Patient Health Questionnaire - 9 Item
C4083201
CDISC
Patient Health Questionnaire - 9 (PHQ-9) (Kroenke K, Spitzer RL, Williams JBW. The PHQ-9: Validity of a brief depression severity measure. J Gen Intern Med 2001; 16:606-613).
https://www.ncbi.nlm.nih.gov/pubmed/31026785
PHQ-9
PHQ01
Patient Health Questionnaire (PHQ-9)
Patient Health Questionnaire - 9 Item
Patient Health Questionnaire-9
Patient Health Questionnaire - 9 Item
true
A self-rated questionnaire which assesses sleep quality and disturbances over a one month time interval.
C103849
Intellectual Product
Pittsburgh Sleep Quality Index
C3697468
Pittsburgh Sleep Quality Index (PSQI) (Copyright 1989, University of Pittsburgh. Buysse,D.J., Reynolds,C.F., Monk,T.H., Berman,S.R., & Kupfer, D.J. The Pittsburgh Sleep Quality Index (PSQI): A new instrument for psychiatric practice and research. Psychiatry Research, 1989, 28(2):193-213).
Authors: Buysse,D.J., Reynolds,C.F., Monk,T.H., Berman,S.R., & Kupfer,D.J. (1989).
https://www.ncbi.nlm.nih.gov/pubmed/26921599
PSQI
PSQI1
Pittsburgh Sleep Quality Index
Pittsburgh Sleep Quality Index (PSQI) SF-10
Pittsburgh Sleep Quality Index
true
A 9 question subset of the Treatment Satisfaction Questionnaire for Medication that omits the five items of the side effects domain.
C107543
Intellectual Product
Treatment Satisfaction Questionnaire for Medication
C3827778
https://www.ncbi.nlm.nih.gov/pubmed/21576040
TSQM-9
Treatment Satisfaction Questionnaire for Medication
Treatment Satisfaction Questionnaire for Medication (TSQM-9)
Treatment Satisfaction Questionnaire for Medication
true
The determination of the amount of ghrelin present in a sample.
C112286
Laboratory Procedure
Ghrelin Measurement
C3813179
CDISC
A measurement of total ghrelin in a biological specimen.
https://www.ncbi.nlm.nih.gov/pubmed/28288363
GHRELIN
Ghrelin
Ghrelin Measurement
Growth Hormone Secretagogue Receptor Ligand
Motilin-related Peptide
Total Ghrelin
Ghrelin Measurement
true
A question about whether an individual has or had a feeling of fullness or heaviness in the area of the stomach.
C113191
Intellectual Product
Have Feeling of Fullness or Heaviness in Stomach Area
C3829801
Have Feeling of Fullness or Heaviness in Stomach Area
I have a feeling of fullness or heaviness in my stomach area
Have Feeling of Fullness or Heaviness in Stomach Area
true
A complication occurring during hemodialysis that is thought to be due to a rapid decrease in blood urea nitrogen, and is characterized by an increase in intracranial pressure resulting in nausea, headache, vomiting, restlessness, and/or a decreased level of consciousness.
C114781
Disease or Syndrome
Dialysis Disequilibrium Syndrome
C0403559
NICHD
A complication occurring during hemodialysis that is thought to be due to a rapid decrease in blood urea nitrogen, and is characterized by an increase in intracranial pressure resulting in nausea, headache, vomiting, restlessness, and/or a decreased level of consciousness.
Dysequilibrium Syndrome
Dialysis Disequilibrium Syndrome
Disequilibrium Syndrome
Dialysis Disequilibrium Syndrome
https://www.epilepsy.com/learn/professionals/co-existing-disorders/renal-disorders/dialysis-disequilibrium-syndrome
true
A technique that monitors blood oxygen level dependent (BOLD) signals to map distant brain regions that work together while performing a task.
C116454
Diagnostic Procedure
Functional Connectivity Magnetic Resonance Imaging
Functional Connectivity Magnetic Resonance Imaging
CL471734
CTRP
Functional Connectivity MRI
Functional Connectivity Magnetic Resonance Imaging
fcMRI
Functional Connectivity Magnetic Resonance Imaging
An extension of conventional diffusion tension imaging, which estimates the kurtosis of the water diffusion probability distribution function. This technique is most commonly used to study the brain.
C116487
Diagnostic Procedure
Diffusion Kurtosis Imaging
Diffusion Kurtosis Imaging
CL433731
CTRP
https://www.ncbi.nlm.nih.gov/pubmed/26255305
DKI
Diffusion Kurtosis Imaging
Diffusion Kurtosis Imaging
true
A collection of blood between the dura mater and the brain.
C116585
Finding
Subdural Hematoma
C0018946
MedDRA
NICHD
A collection of blood into the space between the dura mater and the brain.
Subdural Hematoma
Subdural hematoma
https://www.ncbi.nlm.nih.gov/pubmed/27914224
Subdural Hematoma
Subdural Hematoma
https://www.medpagetoday.com/resource-centers/contemporary-advances-epilepsy/determining-risk-seizures-patients-subdural-hematomas/2090
true
true
The use of electrodes placed directly on the exposed brain surface to record the electrical activity of the cerebral cortex.
C116664
Diagnostic Procedure
Electrocorticography
Electrocorticography
C0430797
CTRP
https://www.ncbi.nlm.nih.gov/pubmed/25204010
ECoG
Electrocorticography
Noachter 1999 Electrocorticography ECoG
Electrocorticography
true
true
A condition characterized by recurrent, self-limiting episodes of vomiting associated with intense nausea, pallor, and lethargy. It is commonly a migraine precursor.
C117014
Finding
Cyclical Vomiting
C0152164
MedDRA
NICHD
A periodic syndrome that is commonly a migraine precursor and is characterized by recurrent, self-limiting episodes of vomiting associated with intense nausea, pallor, and lethargy.
Cyclical Vomiting
Cyclic vomiting syndrome
Cyclical vomiting is characterized by stereotyped periods of recurrent vomiting which may last hours to days and may be separated by weeks during which the individual has no symptoms. It is considered a migraine variant as there is often a family history of migraine headache, though the pathophysiology is not well understood. Usually no trigger to a particular episode can be defined. Recurrent vomiting may produce physiological disturbance but awareness should not be impaired and the attacks are longer than expected in focal seizures. Episodes may begin in early childhood and evolve into abdominal migraine and then to classic migraine with headache. If the vomiting persists into adult life it remains paroxysmal but may be less cyclical in nature.
Cyclical Vomiting
Cyclical Vomiting
true
Cyclical vomiting is characterized by stereotyped periods of recurrent vomiting which may last hours to days and may be separated by weeks during which the individual has no symptoms. It is considered a migraine variant as there is often a family history of migraine headache, though the pathophysiology is not well understood. Usually no trigger to a particular episode can be defined. Recurrent vomiting may produce physiological disturbance but awareness should not be impaired and the attacks are longer than expected in focal seizures. Episodes may begin in early childhood and evolve into abdominal migraine and then to classic migraine with headache. If the vomiting persists into adult life it remains paroxysmal but may be less cyclical in nature.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#cyc-vomiting
Perception of a taste in the absence of a corresponding stimulus.
C118177
Finding
Gustatory Hallucination
C0233766
MedDRA
NICHD
Perception of a taste in the absence of a corresponding stimulus.
Gustatory Hallucination
Hallucination gustatory
Gustatory Hallucination
Gustatory Hallucination
true
An alteration in visual perception that causes objects to appear smaller than their actual size.
C118304
Finding
Micropsia
C0233769
MedDRA
NICHD
An alteration in visual perception that causes objects to appear smaller than their actual size.
Micropsia
Micropsia
https://www.ncbi.nlm.nih.gov/pubmed/28116304
Micropsia
Micropsia
true
An alteration in visual perception that causes objects to appear larger than their actual size.
C118305
Finding
Macropsia
C0233771
MedDRA
NICHD
An alteration in visual perception that causes objects to appear larger than their actual size.
Macropsia
Macropsia
Macropsia
Macropsia
http://www.case.edu/EpSO.owl#Macropsia
https://www.epilepsy.com/connect/forums/living-epilepsy-adults/macropsia-things-feeling-larger-they-are
true
true
Abnormal hypersynchronous electrical activity in the brain of a newborn which may be associated with stereotyped movements or autonomic changes.
C118507
Finding
Neonatal Seizure
C0159020
NICHD
Abnormal hypersynchronous electrical activity in the brain of a newborn infant which may be associated with stereotyped movements or autonomic changes.
Neonatal Seizure
https://www.ncbi.nlm.nih.gov/books/NBK2599/
Neonatal Seizure
Neonatal Seizure
https://emedicine.medscape.com/article/1177069-overview
true
true
Perception of more than one image when viewing with one eye.
C118719
Finding
Monocular Diplopia
C0271190
MedDRA
NICHD
Perception of more than one image when viewing with one eye.
Monocular Diplopia
Monocular diplopia
https://www.ncbi.nlm.nih.gov/pubmed/31914330
Monocular Diplopia
Monocular Diplopia
true
true
A component of the Children's Memory Scale. A child is read a list of paired words and then asked to say the second word after being told the first. The list is presented three times in this fashion. After about 30 minutes the child is given the cued recall trial again.
C120333
Intellectual Product
Word Pairs Delayed
C3897165
https://www.ncbi.nlm.nih.gov/pubmed/26874864
Word Pairs Delayed
Word Pairs Delayed
true
true
A subtest of the Wechsler Memory Scale, 4th Edition that assesses narrative memory under a free recall condition. A short story is presented orally. Immediately after presentation of the story the subject is asked to recall the story from memory.
C120342
Intellectual Product
Logical Memory I Subtest (WMS-IV)
C4027321
https://www.ncbi.nlm.nih.gov/pubmed/26874864
Logical Memory I
Logical Memory I Subtest (WMS-IV)
WMS-IV Logical Memory
WMS-IV Logical Memory I
Logical Memory I Subtest (WMS-IV)
true
Interventions and exercises intended to develop, recover, or maintain the ability of an individual to accomplish their activities of daily living.
C121351
Therapeutic or Preventive Procedure
Occupational Therapy
Occupational Therapy
C1318464
CTRP
NICHD
Interventions and exercises intended to develop, recover, or maintain the ability of an individual to accomplish their activities of daily living.
Occupational Therapy
https://www.ncbi.nlm.nih.gov/pubmed/23941480
OT
Occupational Therapy
Occupational Therapy
https://www.epilepsy.com/learn/diagnosis/you-and-your-healthcare-team/rehabilitation-therapists
true
true
A standardized rating scale designed to assess the executive function behaviors in the school and home environments for children and adolescents as observed by a parent or teacher.
C121459
Intellectual Product
Behavior Rating Inventory of Executive Function
C4050216
https://www.ncbi.nlm.nih.gov/pubmed/31461681
BRIEF
Behavior Rating Inventory of Executive Function
Behavior Rating Inventory of Executive Function (BRIEF)
Behavioral Rating Inventory of Executive Functions
Behavior Rating Inventory of Executive Function
true
A standardized rating scale developed by Ziad Nasreddine in 1996 to screen for mild cognitive dysfunction and impairment. This instrument assesses the following cognitive domains: attention and concentration, executive functions, memory, language, visuoconstructional skills, conceptual thinking, calculations, and orientation.
C123667
Intellectual Product
Montreal Cognitive Assessment Functional Test
C3496286
CDISC
Montreal Cognitive Assessment (MoCA) (Copyright Z. Nasreddine MD. Ziad S. Nasreddine, Natalie A. Phillips, Valerie Bedirian, Simon Charbonneau, Victor Whitehead, Isabelle Collin, Jeffrey L. Cummings and Howard Chertkow. The Montreal Cognitive Assessment, MoCA: A Brief Screening Tool For Mild Cognitive Impairment. J Am Geriatr Soc. 2005 Apr;53(4):695-9).
https://www.ncbi.nlm.nih.gov/pubmed/22258041
MOCA
MOCA01
Montreal Cognitive Assessment
Montreal Cognitive Assessment Functional Test
Montreal Cognitive Assessment Functional Test
true
A form of non-invasive mechanical pressure support ventilation that uses a continuous positive airway pressure level to support spontaneous breathing activity.
C124040
Therapeutic or Preventive Procedure
Continuous Positive Airway Pressure
Continuous Positive Airway Pressure
C0199451
CTRP
https://www.ncbi.nlm.nih.gov/pubmed/21849000
https://www.ncbi.nlm.nih.gov/pubmed/29991426
CPAP
Continuous Positive Airway Pressure
Continuous positive airway pressure (CPAP)
Continuous Positive Airway Pressure
true
A group of malignant gliomas that includes anaplastic astrocytoma, anaplastic oligodendroglioma, anaplastic oligoastrocytoma, and anaplastic ependymoma.
C127816
Neoplastic Process
WHO Grade III Glioma
WHO Grade III Glioma
CL509578
CTRP
Malignant
Anaplastic Glioma
WHO Grade III Glioma
WHO Grade III Glioma
http://www.case.edu/EpSO.owl#AnaplasticGlioma
An examination of an individual to determine their health status prior to a surgical procedure and their suitability for the procedure.
C139982
Research Activity
Pre-operative Evaluation
C1293091
NCCN
https://www.ncbi.nlm.nih.gov/pubmed/27101469
Pre-operative Evaluation
Preoperative Evaluation
pre-surgical evaluation
Pre-operative Evaluation
true
A training technique in which various bodily functions, such as heart rate, skin temperature, muscle tension, and brain activity are monitored so that people can learn to control them voluntarily so as to improve their health and physical performance.
C15186
Mental Process
Biofeedback
Biofeedback
C0005491
CTRP
Biofeedback
https://www.ncbi.nlm.nih.gov/pubmed/30819542
Biofeedback
biofeedback
Biofeedback
true
Surgical removal of a lobe of an organ.
C15272
Therapeutic or Preventive Procedure
Lobectomy
Lobectomy
C0023928
CTRP
Surgery to remove a whole lobe (section) of an organ (such as the lungs, liver, brain, or thyroid gland).
Lobectomy
Lobectomy
Lobectomy
lobectomy
Lobectomy
http://www.chp.edu/our-services/brain/neurosurgery/epilepsy-surgery/services/lobectomy
true
A method of treating disease, esp. psychic disorders, by mental rather than pharmacological means (e.g., suggestion, re-education, hypnotism, and psychoanalysis). (Taber's)
C15308
Therapeutic or Preventive Procedure
Psychotherapy
Psychotherapy
C0033968
CTRP
Treatment of mental, emotional, personality, and behavioral disorders using methods such as discussion, listening, and counseling.
Psychotherapy
Psychotherapy
psychotherapy
talk therapy
Psychotherapy
Restoration of the ability to function in a normal or near normal manner following disease, illness, or injury.
C15315
Therapeutic or Preventive Procedure
Rehabilitation
Rehabilitation
C0034991
CTRP
In medicine, a process to restore mental and/or physical abilities lost to injury or disease, in order to function in a normal or near-normal way.
Rehabilitation
Physical Health Services / Rehabilitation
Rehabilitation
Rehabilitation, Medical
rehabilitation
rehabilitation therapy
Rehabilitation
true
Performing a salvage procedure is the last resort. The clinical situation involves either ongoing life support measures, life support measures for more than 60 seconds during the prior 10 minutes, or unanticipated institution of extracorporeal circulatory support. (ACC)
C15359
Therapeutic or Preventive Procedure
Salvage Therapy
Salvage Therapy
C0085405
CDISC
CPTAC
CTRP
Performing a salvage procedure is the last resort. The clinical situation involves either ongoing life support measures, life support measures for more than 60 seconds during the prior 10 minutes, or unanticipated institution of extracorporeal circulatory support.
Treatment that is given after the cancer has not responded to other treatments.
Salvage_Therapy
SALVAGE
Salvage
Salvage Therapy
salvage therapy
Rescue treatments
Salvage Therapy
https://www.epilepsy.com/learn/managing-your-epilepsy/using-rescue-treatments
true
Therapeutic use of hypnotism by a clinical professional.
C15420
Mental Process
Hypnotherapy
Hypnotherapy
C0020587
CPTAC
CTRP
Hypnotherapy
Clinical Hypnosis
Hypnosis
Hypnotherapy
Hypnotherapy
https://hypnosementor.nl/en/the-use-of-hypnosis-with-epilepsy/
true
The determination of the amount of gamma-aminobutyric acid present in a sample.
C154766
Laboratory Procedure
Gamma-Aminobutyric Acid Measurement
CL555601
CDISC
A measurement of the gamma-aminobutyric acid in a biological specimen.
https://www.ncbi.nlm.nih.gov/pubmed/20345933
GABA
GAMBTAC
Gamma-Aminobutyric Acid
Gamma-Aminobutyric Acid Measurement
Gamma-aminobutyrate
γ-aminobutyric acid (GABA) levels
Gamma-Aminobutyric Acid Measurement
true
Supportive care is that which helps the patient and their family to cope with cancer and treatment of it from pre-diagnosis, through the process of diagnosis and treatment, to cure, continuing illness or death and into bereavement. It helps the patient to maximize the benefits of treatment and to live as well as possible with the effects of the disease. Supportive therapy may provide a patient with friendship, encouragement, practical advice such as access to community resources or how to develop a more active social life, vocational counseling, suggestions for minimizing friction with family members, and, above all, hope that the life of the patient may be improved. In all situations, supportive therapy involves the teaching of such life skills as managing medication, learning to socialize, handling finances, and getting a job.
C15747
Therapeutic or Preventive Procedure
Supportive Care
Supportive Care
C0344211
CDISC
CTRP
Any action or process to maximize comfort, minimize side effects, or mitigate against a decline in the participant's health or function. (clinicaltrials.gov)
Supportive_Care
Supportive Care
Supportive Therapy
Symptom Management
Therapy, Supportive
supportive care
Supportive Care
C157609
Finding
Complication due to Medical/Surgical Care
CL937198
CPTAC
https://www.ncbi.nlm.nih.gov/pubmed/24861650
Complication due to Medical/Surgical Care
complications of epilepsy surgery
Complication due to Medical/Surgical Care
true
Treatment of disease through the use of drugs.
C15986
Therapeutic or Preventive Procedure
Pharmacotherapy
C0013216
CPTAC
NICHD
Treatment with any substance, other than food, that is used to prevent, diagnose, treat, or relieve symptoms of a disease or abnormal condition.
Pharmacological_Treatment
Drug Therapy
Pharmaceutical Therapy, NOS
https://www.ncbi.nlm.nih.gov/pubmed/29140112
Drug Therapy
Pharmaceutical Therapy
Pharmacological Treatment
Pharmacological Treatments
Pharmacotherapy
Treatment With Medication
drug therapy
Pharmacotherapy
true
The process by which information about the health status of an individual is obtained after a study has officially closed; an activity that continues something that has already begun or that repeats something that has already been done.
C16033
Health Care Activity
Follow-Up
C1522577
CDISC
Monitoring a person's health over time after treatment. This includes keeping track of the health of people who participate in a clinical study or clinical trial for a period of time, both during the study and after the study ends.
The process by which information about the health status of a subject is obtained after the subject is no longer receiving study medication.
Follow-up
https://www.ncbi.nlm.nih.gov/pubmed/27091679
Active Follow-up
CLSFUP
Clinical Signs Follow-up
Follow Up
Follow-Up
Follow-up
Followup
follow-up
Follow-Up
true
Cognitive, emotional, and behavioral difficulties that often occur in conjunction with frontal lobe disorders, including traumatic injury and dementia. It is also a feature of attention deficit disorder and other non-trauma-induced conditions.
C160587
Mental or Behavioral Dysfunction
Executive Function Disorder
Executive Function Disorder
CTRP
https://www.ncbi.nlm.nih.gov/pubmed/30909075
EFD
Executive Dysfunction
Executive Function Disorder
Executive Functioning Deficit
Impairment of Executive Functions
Executive Function Disorder
true
A categorization of surgical procedures by type or purpose.
C161601
Health Care Activity
Surgical Procedure by Type
Surgical Procedure by Type
Surgical Procedure by Type
MRI that uses a magnet capable of producing a 7 telsa field strength. This increased magnet strength is can produce images with greater signal-to-noise ratio and increased spatial resolution, or faster imaging at standard resolution.
C162646
Diagnostic Procedure
7 Tesla Magnetic Resonance Imaging
7 Tesla Magnetic Resonance Imaging
CTRP
https://www.ncbi.nlm.nih.gov/pubmed/28324301
7 Tesla (7 T) MRI
7 Tesla MRI
7 Tesla Magnetic Resonance Imaging
7T MRI
7 Tesla Magnetic Resonance Imaging
true
An individual's weight in kilograms divided by the square of the height in meters.
C16358
Clinical Attribute
Body Mass Index
C1305855
CDISC
CPTAC
NCPDP
A general indicator of the body fat an individual is carrying based upon the ratio of weight to height. (NCI)
A measure that relates body weight to height. BMI is sometimes used to measure total body fat and whether a person is a healthy weight. Excess body fat is linked to an increased risk of some diseases including heart disease and some cancers.
Body_Mass_Index
BMI
Body Mass Index
Quetelet Index
body mass index
Body Mass Index
true
The cause of a disease or abnormal condition.
C16390
Conceptual Entity
Etiology
C1314792
The cause or origin of disease.
Etiology
In recent years there has been a significant expansion in our understanding of the underlying etiologies of the epilepsies, underpinned by advances in modern neuroimaging and genetic testing. As such terminology such as 'idiopathic', 'cryptogenic' and 'symptomatic' are no longer used. Epilepsies are now described more precisely by their specific underlying etiologies.
Causation
Cause
Etiology
etiology
Epilepsy etiologies
Etiology
true
In recent years there has been a significant expansion in our understanding of the underlying etiologies of the epilepsies, underpinned by advances in modern neuroimaging and genetic testing. As such terminology such as 'idiopathic', 'cryptogenic' and 'symptomatic' are no longer used. Epilepsies are now described more precisely by their specific underlying etiologies.
https://www.epilepsydiagnosis.org/aetiology/epilepsies-etiology-groupoverview.html
The measurement of the magnetic fields produced by electrical activity in the brain, usually conducted externally, using extremely sensitive devices. The measurement of electric fields in the brain provides information about the localization of brain activity which is complementary to that provided by electroencephalography.
C16811
Diagnostic Procedure
Magnetoencephalography
Magnetoencephalography
C0024489
CTRP
Magnetoencephalography
https://www.ncbi.nlm.nih.gov/pubmed/15281961
MEG
Magnetoencephalography
Magnetoencephalography
true
true
true
A representation of something, often idealized or modified to make it conceptually easier to understand.
C16866
Intellectual Product
Model
C3161035
CDISC-GLOSS
A formal structure for representing and analyzing a process such as a clinical trial or the information pertaining to a restricted context (e.g., clinical trial data). [CDISC]
Model_System
Model
Model System
Modeling System
Models
model
Model
Any aspect of an individual's life, behavior, an environmental exposure, or an inborn or inherited characteristic that increases the likelihood of a disease, condition or injury.
C17103
Clinical Attribute
Risk Factor
C0035648
Something that increases the chance of developing a disease. Some examples of risk factors for cancer are age, a family history of certain cancers, use of tobacco products, being exposed to radiation or certain chemicals, infection with certain viruses or bacteria, and certain genetic changes.
Risk_Factor
Risk Factor
risk factor
Risk Factor
A method of examining structures within the body by scanning them with X rays and using a computer to construct a series of cross-sectional scans along a single axis.
C17204
Diagnostic Procedure
Computed Tomography
Computed Tomography
C0040405
CDISC
CTRP
FDA
A series of detailed pictures of areas inside the body; the pictures are created by a computer linked to an x-ray machine.
An imaging technique for examining structures within the body by scanning them with X rays and using a computer to construct a series of cross-sectional scans along a single axis.
Computed_Tomography
https://www.ncbi.nlm.nih.gov/pubmed/?term=8215194
CAT
CAT Scan
CAT scan
CT
CT SCAN
CT scan
Computed Tomography
Computerized Axial Tomography
Computerized Tomography
computed tomography
computerized axial tomography
computerized tomography
tomography
Computed Tomography
true
A computer algorithm to solve non-linear optimization problems. The algorithm was derived in analogy to the way the densely interconnected, parallel structure of the brain processes information.
C17429
Intellectual Product
Neural Network
C0870951
Neural_Network
Neural Network
Neural Networks (Computer)
Neural Network
C17456
Intellectual Product
Experimental Model
C0086272
Experimental_Model
Experimental Model
Experimental Models, Other
Experimental Model
Surgery that does not alter the course of a disease, but improves the quality of life.
C17883
Therapeutic or Preventive Procedure
Palliative Surgery
Palliative Surgery
C0282282
CTRP
Palliative_Surgery
https://www.ncbi.nlm.nih.gov/pubmed/23250841
Palliative Surgery
Palliative Surgery
true
Any procedure or test to diagnose a disease or disorder.
C18020
Diagnostic Procedure
Diagnostic Procedure
Diagnostic Procedure
C0430022
CTRP
NICHD
A specific test or series of steps done to help diagnose a disease or condition. Mammograms and colonscopies are examples of diagnostic procedures.
Diagnostic_Procedure
Diagnostic Procedure
Other diagnostic procedures on breast
Other diagnostic procedures on rectum, rectosigmoid and perirectal tissue
Diagnostic Method
Diagnostic Procedure
Diagnostic Technique
Diagnostic Test
diagnostic procedure
diagnostic technique
Diagnostic Procedure
Techniques for analysis of chromosomal and subchromosomal properties and structures, such as those to diagnose, classify, screen for, or manage genetic diseases and abnormalities.
C18280
Laboratory Procedure
Cytogenetic Analysis
Cytogenetic Analysis
C0752095
CDISC
CPTAC
CTRP
The determination of the holistic or specific regional aberrations in a chromosome (insertions, deletions, amplifications, translocations).
Cytogenetic_Analysis
Cytogenetics, NOS
https://www.ncbi.nlm.nih.gov/pubmed/21269290
CHROMAB
Chromosomal Aberration
Cytogenetic Analysis
Cytogenetic Techniques
Cytogenetic studies
Cytogenetic Analysis
true
A record of a patient's background regarding health and the occurrence of disease events of the individual. In addition, personal medical history may be a variable in epidemiologic studies.
C18772
Clinical Attribute
Personal Medical History
C0262926
CPTAC
NICHD
A collection of information about a person's health. It may include information about allergies, illnesses and surgeries, and dates and results of physical exams, tests, screenings, and immunizations. It may also include information about medicines taken and about diet and exercise.
Personal_Medical_History
Personal Medical History
General Medical History
History
Medical History
PMH
Past Medical History
Personal History
Personal Medical History
personal health record
personal history
personal medical history
Personal Medical History
true
A rodent disease whose pathologic mechanisms are sufficiently similar to those of a human disease to serve as a model.
C19021
Experimental Model of Disease
Rodent Model of Disease
C1519106
Rodent_Model
https://www.ncbi.nlm.nih.gov/pubmed/22938964
Rodent Model of Disease
Rodent Model of Disease
true
C19146
Research Activity
In Vitro Model
C1515654
in_vitro_Model
https://www.ncbi.nlm.nih.gov/pubmed/30086482
In vitro (Latin for within the glass) refers to the technique of performing a given procedure in a controlled environment outside of a living organism.
In Vitro Model
In Vitro Model
true
In vitro (Latin for within the glass) refers to the technique of performing a given procedure in a controlled environment outside of a living organism.
https://mpkb.org/home/patients/assessing_literature/in_vitro_studies
C19148
Research Activity
In Vivo Model
C1515657
in_vivo_Model
https://www.ncbi.nlm.nih.gov/pubmed/30086482
In vivo (Latin for “within the living”) refers to experimentation using a whole, living organism as opposed to a partial or dead organism.
In Vivo Model
In Vivo Model
true
In vivo (Latin for “within the living”) refers to experimentation using a whole, living organism as opposed to a partial or dead organism.
https://mpkb.org/home/patients/assessing_literature/in_vitro_studies
A disease in a transgenic animal with pathologic mechanisms sufficiently similar to those of a human disease for the animal disease to serve as a model.
C19272
Experimental Model of Disease
Transgenic Model
C1519606
Transgenic_Model
https://www.ncbi.nlm.nih.gov/pubmed/20492865
Transgenic Model
Transgenic Model
true
Research animal models that do not include mice, rats, etc, but that might include non-human primates, cats, dogs, and others.
C19300
Experimental Model of Disease
Non-Rodent Model
C1518385
Non-Rodent_Model
https://www.ncbi.nlm.nih.gov/pubmed/22938964
Non-Rodent Model
Non-Rodent Model
true
The distinguishing qualities or prominent aspects of an individual person.
C19332
Organism Attribute
Personal Attribute
C0681884
Personal_Attribute
Personal
Personal Attribute
Subject Characteristics
Personal Attribute
A laboratory procedure that involves the study of tissues, cells, and fluids using DNA/RNA analysis techniques for the identification of characteristics and abnormalities at the molecular level.
C19770
Laboratory Procedure
Molecular Analysis
C1513380
Molecular_Analysis
Molecular Analysis
Molecular Genetic Analysis
Molecular Genetic Procedure
Molecular Procedure
Molecular Analysis
The X-ray examination of the blood vessels or chambers of the heart.
C20080
Diagnostic Procedure
Angiography
Angiography
CL378222
CDISC
CTRP
A method used to create an image of blood vessels.
A procedure to x-ray blood vessels. The blood vessels can be seen because of an injection of a dye that shows up in the x-ray.
Angiography
ANGIOGRAPHY
Angiography
angiography
Angiography
http://epilepsyontario.org/wada-test/
true
Any one of several evaluation/assessment tools used to ascertain a patient's condition or diagnosis.
C20993
Intellectual Product
Research or Clinical Assessment Tool
C1516602
NICHD
Clinical_Assessment_Tool
Clinical Assessment Tool
Clinical Assessment Tool
Clinical or Research Assessment Tool
Research or Clinical Assessment Tool
Research or Clinical Assessment Tool
A highly invasive form of electroanalgesia mainly used in the management of debilitating chronic pain syndromes after all other less invasive therapeutic modalities (including SCS) have failed. (White, Li, and Chiu)
C21024
Therapeutic or Preventive Procedure
Deep Brain Stimulation
C0394162
CPTAC
Deep_Brain_Stimulation
https://www.ncbi.nlm.nih.gov/pubmed/30030085
DBS
Deep Brain Stimulation
Deep Brain Stimulation Therapy
Deep Brain Stimulation
true
The vertical measurement or distance from the base to the top of an object; the vertical dimension of extension.
C25347
Quantitative Concept
Height
C0489786
CDISC
FDA
NCPDP
The vertical measurement or distance from the base to the top of an object; the vertical dimension of extension. (NCI)
Vertical measurement value.
Height
https://www.ncbi.nlm.nih.gov/pubmed/28384785
HEIGHT
Height
Height at Time of Procedure
Height
true
Something that happens at a given place and time.
C25499
Event
Event
C0441471
Event
Event
Event
A functional and/or structural disorder of the brain caused by diseases (e.g. liver disease, kidney disease), medications, chemicals, and injuries.
C26920
Disease or Syndrome
Encephalopathy
C0085584
Patient Code (Appendix B)
CTCAE
FDA
MedDRA
NICHD
A disorder characterized by a pathologic process involving the brain.
A disorder of the brain that can be caused by disease, injury, drugs, or chemicals.
Diffuse disease of the brain that alters function and/or structure of the brain and is characterized by an altered mental state.
Encephalopathy
Encephalopathy
Encephalopathy
Encephalopathy
encephalopathy
Encephalopathy
Any disease or disorder that occurs during the course of, or because of, another disease, treatment, or procedure.
C2959
Finding
Complication
C0009566
NICHD
In medicine, a medical problem that occurs during a disease, or after a procedure or treatment. The complication may be caused by the disease, procedure, or treatment or may be unrelated to them.
Complication
Complication
Complication
Medical Complication
complication
Complication
A traumatic injury to the head.
C34660
Finding
Head Injury
C0018674
Patient Code (Appendix B)
FDA
NICHD
Head_Injury
Head Injury
Head Injury
Injury of Head
Injury, Head
Head Injury
true
A psychological state of emotional lability characterized by irrational behavior. This is a colloquial term that is not commonly used in clinical medicine.
C34721
Sign or Symptom
Hysteria
C0020701
Hysteria
https://www.ncbi.nlm.nih.gov/books/NBK1169/#adnfle.Clinical_Characteristics
Hysteria
Hysteria
true
A partial motor seizure that begins in a single area of the body and progresses to include other areas on the same side of the body.
C34739
Finding
Jacksonian Seizure
C0022333
Jacksonian_Seizure
Jacksonian Seizure
Jacksonian Seizure
https://www.epilepsy.com/article/2013/6/do-you-know-what-jacksonian-march
true
The visual perception of an image that differs from the reality of the image.
C34865
Disease or Syndrome
Optical Illusion
C0029139
Optical_Illusion
Optical Illusion
Visual Illusion
Optical Illusion
https://eyewiki.aao.org/Ophthalmologic_Manifestations_of_Epilepsy
true
true
A specific behavioral problem that occurs in persistent patterns and characteristic clusters and that causes clinically significant impairment.
C35470
Mental or Behavioral Dysfunction
Behavioral Disorder
C0481391
CPTAC
NICHD
Behavior-Related_Disorder
Behavioral Disorder
Seeking and accepting physical, nutritional and chemical interventions known to be hazardous and harmful
https://www.ncbi.nlm.nih.gov/pubmed/27210239
Behavior-Related Disorder
Behavior-Related Problem
Behavioral Disorder
Behaviour-Related Disorder
Lifestyle-Related Condition
Lifestyle-Related Disorder
Lifestyle-Related Problem
Behavioral, psychological and psychiatric disorders
Behavioral Disorder
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#behavioral
true
true
A variation in or modification of the nucleic acid sequence of a gene that can alter its expression and may result in either a congenital disorder or the clinical presentation of a disease.
C36327
Cell or Molecular Dysfunction
Gene Abnormality
C1517478
Gene_Abnormality
Current knowledge regarding the contribution of gene abnormalities to epilepsy derives from specific molecular genetic studies that have been well replicated and even become the basis of diagnostic testing, or from appropriately designed family studies.
Gene Abnormality
Genetic Mutation
Gene Abnormality
http://www.case.edu/EpSO.owl#GeneticMutation
true
Current knowledge regarding the contribution of gene abnormalities to epilepsy derives from specific molecular genetic studies that have been well replicated and even become the basis of diagnostic testing, or from appropriately designed family studies.
https://www.epilepsydiagnosis.org/aetiology/gene-abnormalities-overview.html
Surgery which cures disease.
C38047
Therapeutic or Preventive Procedure
Curative Surgery
C1511562
Curative_Surgery
https://www.ncbi.nlm.nih.gov/pubmed/16380232
Curative Surgery
Curative Surgery
true
A twenty-one question survey completed by a patient, with each answer scored on a scale of 0 to 3, designed to measure presence of depression.
C40438
Intellectual Product
Beck Depression Inventory
C0451022
Beck_Depression_Inventory
https://www.ncbi.nlm.nih.gov/pubmed/29111504
Beck Depression Inventory
Beck Depression Inventory
true
Graphic representation and categorization of the electrical vectors produced by the depolarization and repolarization of myocardial tissue.
C41328
Finding
Electrocardiographic Finding
C0438154
Electrocardiographic_Finding
ECG Finding
Electrocardiographic Finding
Electrocardiographic Findings
Electrocardiographic Finding
Infection of a break in the skin or other tissue.
C45234
Disease or Syndrome
Wound Infection
C0043241
MedDRA
NICHD
A disorder characterized by an infectious process involving the wound.
Infection of a break in the skin or other tissue due to injury.
Wound_Infection
Wound Infection
Wound infection
https://www.ncbi.nlm.nih.gov/pubmed/29624147
Wound Infection
Wound infection
Wound Infection
true
A conductor that is designed to make contact with part of a circuit or system.
C49936
Manufactured Object
Electrode Device
C0013812
FDA
A small piece of metal or other conductive substance this is used to take an electric current to or from a source of power, a piece of equipment. Not to be used for patient connection.
In medicine, a device such as a small metal plate or needle that carries electricity from an instrument to a patient for treatment or surgery. Electrodes can also carry electrical signals from muscles, brain, heart, skin, or other body parts to recording devices to help diagnose certain conditions.
Electrode_Device_Component
IMDRF:G021501
Electrode
Electrode Device
electrode
Electrode Device
A dose of medicine that was not taken at the prescribed dosing interval.
C50429
Functional Concept
Missed Dose
C1709043
Patient Code (Appendix B)
FDA
Missed_Dose
Dose, Missed
Missed Dose
Missed Dose
https://www.epilepsy.com/learn/triggers-seizures/missed-medicines
true
A state of general hypoxia and hypercapnea, resulting in acidosis, which affects all tissues in the body.
C50465
Finding
Asphyxia
C0004044
Patient Code (Appendix B)
FDA
MedDRA
NICHD
A condition due to lack of oxygen in respired air, resulting in impending or actual cessation of life.
A state of hypoxia and hypercapnea, resulting in acidosis, which affects all tissues in the body.
Asphyxia
Asphyxia
Asphyxia
https://www.ncbi.nlm.nih.gov/pubmed/29382476
Asphyxia
Asphyxia
true
A severe, often fatal encephalopathy which has been attributed to accumulation in the brain of aluminum from dialysate prepared with inadequately purified water.
C50531
Disease or Syndrome
Dialysis Encephalopathy
C0221040
Patient Code (Appendix B)
FDA
A severe, often fatal encephalopathy which has been attributed to accumulation in the brain of aluminum from dialysate prepared with inadequately purified water.
Dialysis_Encephalopathy
Dementia, Dialysis
Dialysis Dementia
Dialysis Encephalopathy
Progressive Dialysis Encephalopathy
Dialysis Encephalopathy
https://www.epilepsy.com/learn/professionals/co-existing-disorders/renal-disorders/dialysis-encephalopathy-syndrome
true
A sudden movement downward, usually resulting in injury.
C50558
Phenomenon or Process
Fall
C0085639
Patient Code (Appendix B)
CPTAC
CTCAE
FDA
MedDRA
NICHD
A finding of sudden movement downward, usually resulting in injury.
An event which results in an individual coming to rest inadvertently on the ground or lower object. (WHO)
Fall
Fall
Fall
Fall
Fall
https://www.epilepsy.com/learn/age-groups/seniors-and-epilepsy/falls-during-seizures
true
true
An objective visual sensation that appears with the eyes closed and in the absence of visual light.
C50697
Finding
Phosphene Visualization
C1709528
Patient Code (Appendix B)
FDA
An objective visual sensation that appears with the eyes closed and in the absence of visual light.
Phosphene_Visualization
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2757123/
Phosphene Visualization
Visualization, Phosphene
Phosphene Visualization
true
true
Flow in the opposite direction from normal, as the casting up of undigested food or gas from the stomach, or the backward flowing of blood into the heart, or between the chambers of the heart when a valve is incompetent.
C50726
Finding
Regurgitation
C2004489
Patient Code (Appendix B)
FDA
NICHD
Flow in the opposite direction from normal, as the casting up of undigested food or gas from the stomach, or the backward flowing of blood into the heart, or between the chambers of the heart when a valve is incompetent.
Regurgitation
Regurgitation
https://www.ncbi.nlm.nih.gov/pubmed/28139515
Regurgitation
Regurgitation
true
An interconnected system of things or people.
C61377
Conceptual Entity
Network
C1882071
Network
Network
Network
C63479
Laboratory Procedure
Gene Expression Analysis
Gene Expression Analysis
C1880945
CTRP
Gene_Expression_Analysis
https://www.ncbi.nlm.nih.gov/pubmed/19243383
https://www.ncbi.nlm.nih.gov/pubmed/29722352
Gene expression analysis is the study of gene products by imaging, amplification, probe hybridization or sequencing-based detection methods.
Gene Expression Analysis
Gene Expression Analysis
true
Gene expression analysis is the study of gene products by imaging, amplification, probe hybridization or sequencing-based detection methods.
https://www.nature.com/subjects/gene-expression-analysis
A type of psychotherapy utilized to treat different forms of mental disorders.The treatment involves the identification of unhelpful or destructive patterns of thinking and behaviors and the subsequent replacement with behaviors that are beneficial and constructive.
C64345
Therapeutic or Preventive Procedure
Cognitive Behavior Therapy
Cognitive Behavior Therapy
C0009244
CTRP
A type of psychotherapy that helps patients change their behavior by changing the way they think and feel about certain things. It is used to treat mental, emotional, personality, and behavioral disorders.
Cognitive_Behavior_Therapy
https://www.ncbi.nlm.nih.gov/pubmed/28382495
CBT
CT
Cognitive Behavior Therapy
cognitive behavior therapy
cognitive therapy
Cognitive and Behavioral Interventions
Cognitive Behavior Therapy
true
A type of diffusion-weighted magnetic resonance imaging (DW-MRI) that maps the diffusion of water in three dimensions, the principal purpose of which is to image the white matter of the brain, specifically measuring the anisotropy, location, and orientation of the neural tracts, which can demonstrate microstructural changes or differences with neuropathology and treatment.
C64862
Diagnostic Procedure
Diffusion Tensor Imaging
Diffusion Tensor Imaging
C1537007
CDISC
CTRP
A type of MRI technique that maps the diffusion of water in three dimensions.
Diffusion_Tensor_Imaging
https://www.ncbi.nlm.nih.gov/pubmed/26255305
DIFFUSION TENSOR MRI
DT-MRI
DTI
Diffusion Tensor Imaging
Diffusion Tensor Imaging
true
C65017
Therapeutic or Preventive Procedure
Nutritional Therapy
C2937349
CPTAC
Treatment based on nutrition. It includes checking a person's nutrition status, and giving the right foods or nutrients to treat conditions such as those caused by diabetes, heart disease, and cancer. It may involve simple changes in a person's diet, or intravenous or tube feeding. Medical nutrition therapy may help patients recover more quickly and spend less time in the hospital.
Nutritional_Therapy
Medical Nutrition Therapy
Nutritional Therapy
medical nutrition therapy
nutrition therapy
Nutritional Therapy
https://www.epilepsy.com/living-epilepsy/healthy-living/healthy-eating/nutrition-and-seizure-control
true
A thermal ablation therapy in which neoplasms are heated with prolonged and moderate temperature elevations. It results in coagulative necrosis in the heated tissue.
C68680
Therapeutic or Preventive Procedure
Laser Interstitial Thermal Therapy
Laser Interstitial Thermal Therapy
CL374463
CTRP
Laser_Interstitial_Thermal_Therapy
https://www.ncbi.nlm.nih.gov/pubmed/30591281
LITT
Laser Interstitial Thermal Therapy
Laser Interstitial Thermal Therapy
true
Diverse, mixed, consisting of an assortment of different kinds.
C69023
Qualitative Concept
Miscellaneous
C0205395
Miscellaneous
Misc
Miscellaneous
Miscellaneous events
Miscellaneous
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#misc
true
An animal that is amenable to experimentation and whose physiological or pathologic mechanisms are sufficiently similar to those of a human for the animal to serve as a model.
C71164
Research Activity
Animal Model
C0599779
Animal_Model_Generic
https://www.ncbi.nlm.nih.gov/pubmed/22938964
Animal Model
Animal Model, Generic
Research Model, Animal
Animal Model
true
Injury to the brain of a newborn infant occurring around the time of birth.
C73501
Finding
Perinatal Brain Injury
C2347482
Patient Code (Appendix B)
FDA
NICHD
Injury occurring as a result of the delivery process.
Injury to the brain of a newborn infant occurring around the time of birth.
Brain injury, fetal
Injury, fetal brain
Perinatal_Brain_Injury
Perinatal Brain Injury
Perinatal Brain Injury
Perinatal Brain Injury
https://www.epilepsy.com/learn/about-epilepsy-basics/what-are-risk-factors
true
The determination of the amount of glutamate present in a sample.
C74739
Laboratory Procedure
Glutamate Measurement
C0523665
CDISC
A measurement of the glutamate in a biological specimen.
Glutamate_Measurement
https://www.ncbi.nlm.nih.gov/pubmed/21909104
GLUTAM
Glutamate
Glutamate Measurement
Glutamic Acid
glutamate levels
Glutamate Measurement
true
The determination of the amount of hormone present in a sample.
C74742
Laboratory Procedure
Hormone Measurement
C0441683
NICHD
Hormone_Measurement
Hormone Measurement
Hormone Measurement
Hormone Measurement
The determination of the amount of acetylcholine hormone present in a sample.
C74838
Laboratory Procedure
Acetylcholine Measurement
C0523441
A measurement of the acetylcholine hormone in a biological specimen.
Acetylcholine_Measurement
https://www.ncbi.nlm.nih.gov/pubmed/25819950
ACH
Acetylcholine
Acetylcholine Measurement
Acetylcholine Measurement
true
Systems designed to elucidate facts about complex biological phenomena, usually in a less complex or theoretical test environment.
C80519
Intellectual Product
Biological Model
C0026339
Biological_Model
Biological Model
Biological Models
Model
Model System
Biological Model
Past events that occurred between individuals and/or their communities.
C81292
Clinical Attribute
Social History
C0424945
NICHD
Social_History
Social History
Social History
Social History
true
The weight of a subject.
C81328
Conceptual Entity
Body Weight
C0005910
CDISC
NCPDP
NICHD
The weight of a subject. (NCI)
Weight_of_Body
Body Weight
https://www.ncbi.nlm.nih.gov/pubmed/25487080
BW
Body Weight
Body Weight
true
A group of neural cortical developmental malformations of diverse genetic causes. Clinical manifestations include epilepsy and developmental delays.
C84834
Congenital Abnormality
Malformations of Cortical Development
C1955869
Malformations of cortical development are structural abnormalities of the cerebral cortex (the grey matter that lines the surface of the brain), which arise due to the abnormal formation of the cerebral cortex in early (intrauterine) life. The precursor cells of the cerebral cortex are initially formed in the periventricular region, and then migrate to their correct location to form the normal structure and cell connections seen in the mature cerebral cortex.
Malformations of Cortical Development
Malformations of Cortical Development
true
Malformations of cortical development are structural abnormalities of the cerebral cortex (the grey matter that lines the surface of the brain), which arise due to the abnormal formation of the cerebral cortex in early (intrauterine) life. The precursor cells of the cerebral cortex are initially formed in the periventricular region, and then migrate to their correct location to form the normal structure and cell connections seen in the mature cerebral cortex.
https://www.epilepsydiagnosis.org/aetiology/malform-cortical-dev-overview.html
A parasitic infection with tapeworms of the genus Taenia affecting the brain. It is manifested with seizures and headaches.
C84932
Disease or Syndrome
Neurocysticercosis
C0338437
NICHD
A central nervous system infection that results from the inactive parenchymal or ventricular stage of Taenia solium. While many infections are asymptomatic, seizures are the most common symptom.
Neurocysticercosis
Neurocysticercosis is caused by ingestion of food contaminated with Taenia solium eggs. Eggs hatch in the intestine, larvae migrate to the central nervous system and then form cysts. Cysts have four phases: 1) vesicular (asymptomatic); 2) colloidal (degeneration and inflammation); 3) granular nodular; and 4) calcification. Although seizures are most often associated with cyst degeneration, they can occur at any stage. Although neurocysticercosis is more prevalent in developing countries (Latin-America, India and Africa), individuals in developed countries may be affected, if they have had foreign travel to endemic areas.
Neurocysticercosis
Neurocysticercosis
true
Neurocysticercosis is caused by ingestion of food contaminated with Taenia solium eggs. Eggs hatch in the intestine, larvae migrate to the central nervous system and then form cysts. Cysts have four phases: 1) vesicular (asymptomatic); 2) colloidal (degeneration and inflammation); 3) granular nodular; and 4) calcification. Although seizures are most often associated with cyst degeneration, they can occur at any stage. Although neurocysticercosis is more prevalent in developing countries (Latin-America, India and Africa), individuals in developed countries may be affected, if they have had foreign travel to endemic areas.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
A condition characterized by development of symptoms while standing. It is an autonomic nervous system disorder and the symptoms are relieved once the person sits back down. Symptoms include heart palpitations, sweating, anxiety, lightheadedness, hyperpnea, anxiety, and blurred vision.
C84973
Finding
Orthostatic Intolerance
C1535893
https://www.ncbi.nlm.nih.gov/pubmed/18777476
Orthostatic intolerance may result in syncope with changes in posture. Chronic orthostatic intolerance / the postural orthostatic tachycardia syndrome (POTS) in adolescents and adults can produce symptoms of light-headedness, dizziness, blurred vision, sweating, headache and nausea.
Orthostatic Intolerance
Orthostatic Intolerance
true
true
Orthostatic intolerance may result in syncope with changes in posture. Chronic orthostatic intolerance / the postural orthostatic tachycardia syndrome (POTS) in adolescents and adults can produce symptoms of light-headedness, dizziness, blurred vision, sweating, headache and nausea.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#orthostatic
An ability to understand the meaning or importance of something (or the knowledge acquired as a result).
C86022
Mental Process
Comprehension
C0162340
https://www.ncbi.nlm.nih.gov/pubmed/28858722
Comprehension
Understanding
Comprehension
true
true
An emotion associated with feeling good.
C86580
Mental Process
Pleasure
C0679105
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4804666/
Pleasure
Pleasure
true
true
Failing to produce an effect from some foregoing stimulus or agent.
C86933
Conceptual Entity
Unresponsive
C0237284
Not Responsive
Unresponsive
Unresponsive
true
An intelligence test published by Harcourt Assessment and designed for children ages 2 years 6 months to 7 years 3 months. It provides subtest and composite scores that represent intellectual functioning in verbal and performance cognitive domains, and provides a composite score that represents a child's general intellectual ability.
C86974
Intellectual Product
Wechsler Preschool and Primary Scale of Intelligence
C2828074
https://www.ncbi.nlm.nih.gov/pubmed/31461681
WPPSI
Wechsler Preschool and Primary Scale of Intelligence
Wechsler intelligence scale for preschool children version IV)
Wechsler Preschool and Primary Scale of Intelligence
true
A change from the normal breathing pattern in an infant, child, or adult, in terms of the amplitude and frequency of inhalations and exhalations.
C87089
Sign or Symptom
Irregular Respiration
C0425492
NICHD
Irregular Respiration
Irregular Breathing
Irregular Respiration
Irregular Respiration
true
An instrument consisting of a predetermined set of questions for a clinical or research assessment.
C91105
Intellectual Product
Clinical or Research Assessment Questionnaire
C2984042
Clinical or Research Assessment Questionnaire
Clinical or Research Assessment Questionnaire
MRI that uses a magnet capable of producing a 3 telsa field strength. In theory, 3.0 T magnets have the capability to provide better image quality, with improved diagnostic performance.
C93013
Diagnostic Procedure
3 Tesla Magnetic Resonance Imaging
3 Tesla Magnetic Resonance Imaging
CL412383
CTRP
A procedure in which radio waves and a powerful magnet linked to a computer are used to make detailed pictures of areas inside the body. These pictures can show the difference between normal and abnormal tissue. 3T MRI has a stronger magnet and makes better images of organs and soft tissue than other types of MRI do. It is used to make images of the brain, the spine, the soft tissue of joints, and the inside of bones and blood vessels.
https://www.ncbi.nlm.nih.gov/pubmed/28324301
3 Tesla (3 T) MRI
3 Tesla MRI
3 Tesla Magnetic Resonance Imaging
3 Tesla magnetic resonance imaging
3T MRI
3 Tesla Magnetic Resonance Imaging
true
C94198
Medical Device
Cardiac Pacemaker
C0030163
An electronic device that is implanted in the body to monitor heart rate and rhythm. It gives the heart electrical stimulation when it does not beat normally. It runs on batteries and has long, thin wires that connect it to the heart.
https://www.ncbi.nlm.nih.gov/pubmed/26293325
Cardiac Pacemaker
artificial pacemaker
cardiac pacemaker
pacemaker
Cardiac Pacemaker
true
Epilepsy that is refractory to treatment.
C9487
Disease or Syndrome
Intractable Epilepsy
C1096063
Intractable_Epilepsy
Intractable Epilepsy
refractory epilepsy
Intractable Epilepsy
A benign glial-neuronal neoplasm. It is usually supratentorial, located, generally, in the cortex and occurs in children and young adults with a long-standing history of partial seizures. A histologic hallmark of this tumor is the 'specific glioneuronal element', characterized by columns, made up of bundles of axons, oriented perpendicularly to the cortical surface. (Adapted from WHO)
C9505
Neoplastic Process
Dysembryoplastic Neuroepithelial Tumor
C1266177
9413/0
Undetermined
Dysembryoplastic_Neuroepithelial_Tumor
9413/0
Dysembryoplastic neuroepithelial tumor
A dysembryoplastic neuroepithelial tumor (DNET) is a glioneuronal tumor that is cortically based, usually with a multinodular and/or multicystic appearance. Histologically, DNET's are characterized by oligodendrioglial like cells, intermixed with neuronal and astrocytic cells, with minimial cellular atypia. They are commonly found in the temporal lobes, but can be found elsewhere. They are frequently found to co-occur with adjacent focal cortical dysplasia (FCD IIIb), suggesting a common developmental etiology for both structural abnormalities.
DNET
DNT
Dysembryoplastic Neuroepithelial Neoplasm
Dysembryoplastic Neuroepithelial Tumor
Dysembryoplastic Neuroepithelial Tumor
true
A dysembryoplastic neuroepithelial tumor (DNET) is a glioneuronal tumor that is cortically based, usually with a multinodular and/or multicystic appearance. Histologically, DNET's are characterized by oligodendrioglial like cells, intermixed with neuronal and astrocytic cells, with minimial cellular atypia. They are commonly found in the temporal lobes, but can be found elsewhere. They are frequently found to co-occur with adjacent focal cortical dysplasia (FCD IIIb), suggesting a common developmental etiology for both structural abnormalities.
https://www.epilepsydiagnosis.org/aetiology/dnet-overview.html
Episodes of cyanosis that result from breath holding spells in response to anger or frustration, during childhood. These episodes usually resolve in a few seconds.
C98909
Finding
Cyanotic Attacks in Children
C3274490
https://www.ncbi.nlm.nih.gov/books/NBK2609/
Breath-holding attacks
Cyanotic Attacks in Children
cyanotic breath-holding attacks
Cyanotic Attacks in Children
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#breath-holding
true
true
A congenital or acquired cystic cavity within the cerebral hemisphere.
C99020
Finding
Porencephalic Cyst
C4082172
NICHD
Cystic area of encephalomalacia that is the end result of a destructive process such as intraparenchymal hemorrhage, infection or trauma.
Porencephalic Cyst
Porencephalic cysts are cavities seen in the cerebral hemispheres, that may arise due to past hypoxia-ischemia, vascular occlusion (stroke), haemorrhage, or infection. These cysts may co-exist with other structural sequelae of the original cerebral insult or with hippocampal sclerosis.
Porencephalic Cyst
Porencephalic Cyst
true
Porencephalic cysts are cavities seen in the cerebral hemispheres, that may arise due to past hypoxia-ischemia, vascular occlusion (stroke), haemorrhage, or infection. These cysts may co-exist with other structural sequelae of the original cerebral insult or with hippocampal sclerosis.
https://www.epilepsydiagnosis.org/aetiology/porencephalic-cyst-overview.html
a pathological bodily process that occurs after a medical intervention. An adverse event is likely caused by the medical intervention; however, such a causal association is not required to be an adverse event.
Melanie Courtot and YH: More work is needed on how to restrict the scope of a term to be an 'adverse event', notably regarding temporal association. When is an appropirate time interval between a medical intervention and an adverse event observed? One week, one month, one year, or a lifetime? For some well-studied medical interventions (e.g., administration of many vaccines or drugs), we probably have a general idea. For many new interventions, we don't know much. In OAE, this issue is associated with defining the 'adverse event incubation time'.
YH: An adverse event is a process that has specified output of some adverse medical outcome (e.g., symptom, sign or accident) after a medical intervention (or process) (e.g., administration of drug or vaccine). The medical intervention can be an administration of a drug, a vaccine (i.e., vaccination), or a special nutritional product (for example, dietary supplement, infant formula, medical food), surgery, or usage of a medical device.
YH: An adverse event is possibly induced by the medical intervention. It can be caused by the medical intervention, or may not be caused by the medical intervention. One ultimate goal (or the goal in clinics) of study adverse events is to assess if the adverse event outcome is due to the medical intervention.
YH: In development of OAE, we initially use vaccine adverse event as our use case. A vaccine adverse event is associated with a vaccination (i.e. a medical intervention), regardless of whether it is considered vaccine-related, and includes any side effect, injury, toxicity, or sensitivity reaction or significant failure of immunization (i.e., a pharmacologic action).
Ref: Baylor NW and Midthum K. Regulation and testing of vaccines. In: Vaccines (Editors: Plotkin S, Orenstein W, and Offit P). 2008. p1623.
YH: The current term 'adverse event' is different from the term definition shown in our paper: He Y, Xiang Z, Sarntivijai S, Toldo L, Ceusters W. OAE: a realism-based biomedical ontology for the representation of adverse events. Adverse Event Representation Workshop, International Conference on Biomedical Ontologies (ICBO), University at Buffalo, NY, July 26-30, 2011. Full lenghth conference proceeding paper.
We made the name changing in order to make OAE cover the broader sense of the 'adverse event' which does not assume definite causal effect between an adverse event and a medical intervention. In current definition, the adverse event emphasizes the time association and assumes a likelihood of such a causal association. This term 'adverse event' is stil under the OGMS:pathological bodily process.
The 'adverse event' defined in the above paper has now been changed to a new term: 'causal adverse event'. See more information in the new publication: Yongqun He Y, Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Abra Guo, Shelley Zhang, Desikan Jagannathan, Luca Toldo, Cui Tao and Barry Smith. OAE: The Ontology of Adverse Events. Journal of Biomedical Semantics. 2014, 5:29 doi:10.1186/2041-1480-5-29. PMID: 25093068.PMCID: PMC4120740.
YH: The main scope of OAE includes: (1) represent terms and relations in the area of adverse events, (2) assess possible associations between an adverse event and a medical intervention, particularly, identify any causal effect of a medical intervention to an adverse event; and (2) understand the mechanism (including molecular mechanisms) of causal adverse events.
YH: There has been discussion regarding whether the term 'side effect' is an alternative term for 'adverse event'. In AERO, the term 'AERO:adverse event' represents a subset of those adverse events for which causality has been established. In OAE, an adverse event for which causality has been established is called 'causal adverse event'.
Yongqun He
AE
adverse reaction
WEB: http://en.wikipedia.org/wiki/Adverse_event
WEB: http://www.fda.gov/Safety/MedWatch/HowToReport/ucm053087.htm
WEB: http://www.ncbi.nlm.nih.gov/pubmed/25093068
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5946606/
The OAE official website is: http://www.oae-ontology.org/.
adverse event
true
medical intervention is a planned process that has the goal of diagnosing, preventing or relieving illness or injury.
The act of intervening, interfering or interceding with the intent of modifying the outcome. In medicine, an intervention is usually undertaken to help treat or cure a condition. For example, "Acupuncture as a therapeutic intervention is widely practiced in the United States,"
Reference:
http://www.medterms.com/script/main/art.asp?articlekey=34214 . Some interventions can be used for diagnosis.
YH
WEB: http://wiki.answers.com/Q/What_is_medical_intervention
medical intervention
coagulopathy AE results in the impairment of blood to clot causing ecessive or prolonged bleeding.
SJ, YH
bleeding disorder
clotting disorder
WEB: http://en.wikipedia.org/wiki/Coagulopathy
10009802
https://www.ncbi.nlm.nih.gov/pubmed/22693291
Coagulopathy Hemorrhage
coagulopathy AE
http://www.case.edu/EpSO.owl#CoagulopathyHemorrhage
true
an adverse event that occurs in brain.
YH
brain disorder AE
brain AE
a brain disorder AE that results in brain tissue, cerebrospinal fluid, and blood vessels being moved or pressed away from their usual position inside the skull.
SJ, YH
WEB: http://www.nlm.nih.gov/medlineplus/ency/article/001421.htm
10006126
https://www.ncbi.nlm.nih.gov/pubmed/25260205
Idiopathic Brain Herniation
brain herniation AE
true
a brain injury AE, injury to the brain caused by an external force, that results in a brain AE
SJ, YH
Traumatic Brain Injury
WEB: http://www.biausa.org/FAQRetrieve.aspx?ID=43913
10067967
brain injury AE
http://www.case.edu/EpSO.owl#TraumaticBrainInjury
https://www.epilepsydiagnosis.org/aetiology/traumatic-brain-injury-overview.html
true
Acupuncture is the stimulation of specific acupuncture points along the skin of the body using thin needles. It can be associated with the application of heat, pressure, or laser light to these same points.
JX, LW
WEB: http://en.wikipedia.org/wiki/Acupuncture
10000646
https://www.ncbi.nlm.nih.gov/pubmed/29888583
acupuncture therapy
acupuncture
true
The amount of a neurotransmitter.
https://www.ncbi.nlm.nih.gov/pubmed/25819950
amount of neurotransmitter
oba
OBA:0000116
neurotransmitter levels
true
The amount of a ammonia when measured in blood.
https://www.ncbi.nlm.nih.gov/pubmed/28288363
blood ammonia amount
blood ammonia amount
true
planned process
Injecting mice with a vaccine in order to test its efficacy
A processual entity that realizes a plan which is the concretization of a plan specification.
'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some
objectives is a planned process.
Bjoern Peters
branch derived
6/11/9: Edited at workshop. Used to include: is initiated by an agent
This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)
planned process
processed material
Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples
Is a material entity that is created or changed during material processing.
PERSON: Alan Ruttenberg
processed material
assay
Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house.
A planned process with the objective to produce information about some evaluant
A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.
12/3/12: BP: the reference to the 'physical examination' is included to point out that a prediction is not an assay, as that does not require physical examiniation.
PlanAndPlannedProcess Branch
measuring
scientific observation
OBI branch derived
study assay
any method
assay
material processing
A cell lysis, production of a cloning vector, creating a buffer.
A planned process which results in physical changes in a specified input material
PERSON: Bjoern Peters
PERSON: Frank Gibson
PERSON: Jennifer Fostel
PERSON: Melanie Courtot
PERSON: Philippe Rocca Serra
material transformation
OBI branch derived
material processing
extracellular electrophysiology recording assay
The recording of a spike train in the caudate nucleus of a monkey where the electrodes are extra cellular, i.e. not in the neuron
An electrophysiology recording assay where the recording location of the electrode is extracellular
Frank Gibson
Helen Parkinson
Frank Gibson
extracellular electrophysiology recording assay
DNA sequencing
Genomic deletions of OFD1 account for 23% of oral-facial-digital type 1 syndrome after negative DNA sequencing. Thauvin-Robinet C, Franco B, Saugier-Veber P, Aral B, Gigot N, Donzel A, Van Maldergem L, Bieth E, Layet V, Mathieu M, Teebi A, Lespinasse J, Callier P, Mugneret F, Masurel-Paulet A, Gautier E, Huet F, Teyssier JR, Tosi M, Frébourg T, Faivre L. Hum Mutat. 2008 Nov 19. PMID: 19023858
DNA sequencing is a sequencing process which uses deoxyribonucleic acid as input and results in a the creation of DNA sequence information artifact using a DNA sequencer instrument.
Philippe Rocca-Serra
OBI Branch derived
DNA sequencing
device
A voltmeter is a measurement device which is intended to perform some measure function.
An autoclave is a device that sterlizes instruments or contaminated waste by applying high temperature and pressure.
A material entity that is designed to perform a function in a scientific investigation, but is not a reagent.
2012-12-17 JAO: In common lab usage, there is a distinction made between devices and reagents that is difficult to model. Therefore we have chosen to specifically exclude reagents from the definition of "device", and are enumerating the types of roles that a reagent can perform.
2013-6-5 MHB: The following clarifications are outcomes of the May 2013 Philly Workshop. Reagents are distinguished from devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in some chemical interaction or reaction during the realization of their experimental role. By contrast, devices do not participate in such chemical reactions/interactions. Note that there are cases where devices use reagent components during their operation, where the reagent-device distinction is less clear. For example:
(1) An HPLC machine is considered a device, but has a column that holds a stationary phase resin as an operational component. This resin qualifies as a device if it participates purely in size exclusion, but bears a reagent role that is realized in the running of a column if it interacts electrostatically or chemically with the evaluant. The container the resin is in (“the column”) considered alone is a device. So the entire column as well as the entire HPLC machine are devices that have a reagent as an operating part.
(2) A pH meter is a device, but its electrode component bears a reagent role in virtue of its interacting directly with the evaluant in execution of an assay.
(3) A gel running box is a device that has a metallic lead as a component that participates in a chemical reaction with the running buffer when a charge is passed through it. This metallic lead is considered to have a reagent role as a component of this device realized in the running of a gel.
In the examples above, a reagent is an operational component of a device, but the device itself does not realize a reagent role (as bearing a reagent role is not transitive across the part_of relation). In this way, the asserted disjointness between a reagent and device holds, as both roles are never realized in the same bearer during execution of an assay.
PERSON: Helen Parkinson
instrument
OBI development call 2012-12-17.
device
assay array
A device made to be used in an analyte assay for immobilization of substances that bind the analyte at regular spatial positions on a surface.
PERSON: Chris Stoeckert, Jie Zheng, Alan Ruttenberg
Penn Group
assay array
electroencephalography
An extracellular electrophysiology assay where electrodes are mounted outside the brain (either on the surface of the scalp on onto the brain surface itself during surgery) to measure the electrical field over the external surface.
Gully Burns
EEG
electroencephalography
true
true
microarray
An affymetrix U133 array is a microarray. Microarrays include 1 and 2-color arrays, custom and commercial arrays (e.g, Affymetrix, Agilent, Nimblegen, Illumina, etc.) for expression profiling, DNA variant detection, protein binding, and other genomic and functional genomic assays.
A processed material that is made to be used in an analyte assay. It consists of a physical immobilisation matrix in which substances that bind the analyte are placed in regular spatial position.
Daniel Schober
PERSON: Chris Stoeckert
https://www.ncbi.nlm.nih.gov/pubmed/26033084
microarray
true
allergy
is a disease in which an abnormally strong inflammatory immune response is triggered against non-self entities, and the immune response has no protective effect
IEDB
IEDB
https://www.ncbi.nlm.nih.gov/pubmed/20161538
Allergies
allergy
true
A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2010-07-19T10:18:02Z
clinical finding
A series of statements representing health-relevant qualities of a patient and of a patient's family.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2010-07-19T10:18:59Z
https://www.ncbi.nlm.nih.gov/pubmed/28190753
clinical history
true
true
A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2009-06-23T10:21:58Z
laboratory finding
A quality of a patient, a material entity that is part of a patient, or a processual entity that a patient participates in, any one of which is observed in a physical examination and is deemed by the clinician to be of clinical significance.
note: defined class
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2010-11-18T11:14:36Z
sign
A physical sign in which a non-zero value is standardly considered to be an indication that the organism is alive.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2009-06-23T11:19:17Z
vital sign
true
Albert Goldfain
creation date: 2009-06-23T11:22:01Z
Homeostasis is defined as the property of a system in which variables are regulated so that internal conditions remain stable and relatively constant. Examples of homeostasis include the regulation of body temperature, and the balance between acidity and alkalinity. It is a process that maintains the stability of the organism’s internal environment in response to fluctuations in external environmental conditions.
homeostasis
Homeostasis is defined as the property of a system in which variables are regulated so that internal conditions remain stable and relatively constant. Examples of homeostasis include the regulation of body temperature, and the balance between acidity and alkalinity. It is a process that maintains the stability of the organism’s internal environment in response to fluctuations in external environmental conditions.
https://www.ncbi.nlm.nih.gov/pubmed/26389962
Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2009-06-23T11:26:44Z
abnormal homeostasis
A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2009-06-23T11:39:44Z
disorder
A sequence of acts of observing and measuring qualities of a patient performed by a clinician; measurements may occur with and without elicitation.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2010-07-19T11:50:18Z
physical examination
true
A process in which at least one bodily component of an organsim participates.
Albert Goldfain
http://www.jbiomedsem.com/content/1/1/10
creation date: 2009-06-23T11:53:49Z
From OGMS: http://purl.obolibrary.org/obo/OGMS_0000060
bodily process
A bodily process that is clinically abnormal.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2009-06-23T11:54:29Z
pathological bodily process
The representation of a conclusion of a diagnostic process.
Albert Goldfain
http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf
creation date: 2009-06-23T12:42:23Z
diagnosis
http://www.case.edu/EpSO.owl#Diagnosis
https://www.epilepsy.com/learn/diagnosing-epilepsy
true
TODO: Define.
Albert Goldfain
http://code.google.com/p/ogms/issues/detail?id=26
creation date: 2009-11-24T04:51:11Z
https://www.ncbi.nlm.nih.gov/books/NBK361/
The information regarding anatomic findings obtained through the use of observation, palpation, percussion, and auscultation.
physical examination finding
Modified definition
true
A planned process whose completion is hypothesized by a health care provider to eliminate, prevent, or alleviate the signs and symptoms of a disorder or pathological process
Albert Goldfain
http://code.google.com/p/ogms/issues/detail?id=35
creation date: 2010-03-31T04:51:11Z
Treatment of epilepsy
treatment
true
A planned process with the objective to improve the health status of a patient that directly involves the treatment, diagnosis, or prevention of disease or injury of a patient
Albert Goldfain
Sagar Jain
http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6
creation date: 2011-02-21T09:57:44Z
editor date: 2017-04-18
health care process
A disorder that involves some structural damage that is immediately caused by a catastrophic external force.
At the scale of organism (as opposed to the cellular scale or the population scale), an injury is typically the result of a catastrophic event. Consider the implications of making 'injury' a subtype of 'disorder'.
Note: Adopted subtype of disorder, and injury can occur at the scale of organism down to cellular level.
Albert Goldfain
Sagar Jain
http://groups.google.com/group/ogms-discuss/browse_thread/thread/ca0ad373f27774c5
OGMS call adoption- 16 SEPT 2015
https://docs.google.com/document/d/1iiV1-fTS7BUUSzDw3N_Afx42698YWf54-FOTY2NkAxo/edit
creation date: 2011-09-20T09:57:44Z
edited date: 30 SEPT 2015
injury
https://www.epilepsy.com/learn/about-epilepsy-basics/what-are-risk-factors
true
A health care process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies.
creation: 16MAY2017
health care process assay
A treatment whose completion is hypothesized by a health care provider to eliminate a disorder or to alleviate the signs and symptoms of a disorder or pathological process.
Creation data: 2018-11-27
therapeutic procedure
A therapeutic procedure that uses immune system derived entities.
creation date: 2018-11-27
Immunotherapy
immunotherapy procedure
https://www.medscape.com/answers/1184846-153550/what-is-the-role-of-immunotherapy-in-the-treatment-of-epileptic-seizures
true
a therapeutic procedure that uses physical conditioning
creation date: 2018-11-27
Physical Therapy
physical therapy procedure
https://www.epilepsy.com/learn/diagnosis/you-and-your-healthcare-team/rehabilitation-therapists
true
a data item that is about a patient and is the specified output of a health care process assay or diagnostic process
creation date: 2018-11-27
clinical data item
A diagnosis that is the outcome of a diagnostic process targeting a second or additional health problem.
Alice Nzinga
Mathias Brochhausen
secondary infection, nosocomial infection
amended from http://en.wikipedia.org/wiki/Comorbidity
It is argued that Comorbidity occurs due to a disposition established by a prior infection with a pathogenic organism of a different kind.
comorbidity
true
mastectomy / craniotomy / liver resection e.t.c.
A planned process that uses operative manual and instrumental techniques on a patient to investigate and/or treat a pathological condition such as disease or injury, or to help improve bodily function or appearance.
http://en.wikipedia.org/wiki/Surgery
Surgical intervention
https://www.ncbi.nlm.nih.gov/pubmed/29107258
surgical procedure
true
https://www.ncbi.nlm.nih.gov/pubmed/28951736
Brain waves characterized by a relatively high voltage or amplitude and a frequency of 8-13 Hz. They constitute the majority of waves recorded by EEG registering the activity of the parietal and occipital lobes when the individual is awake, but relaxed with the eyes closed.
Alpha Rhythm
http://www.case.edu/EpSO.owl#AlphaRhythm
https://emedicine.medscape.com/article/1139332-overview#a1
true
Brain waves characterized by a relatively high voltage or amplitude and a frequency of 8-13 Hz. They constitute the majority of waves recorded by EEG registering the activity of the parietal and occipital lobes when the individual is awake, but relaxed with the eyes closed.
https://www.ncbi.nlm.nih.gov/mesh/D000513
A treatment that suppresses undesirable behavior by simultaneously exposing the subject to unpleasant consequences.
Aversive Therapy
true
A treatment that suppresses undesirable behavior by simultaneously exposing the subject to unpleasant consequences.
https://www.ncbi.nlm.nih.gov/mesh/68001348
https://www.ncbi.nlm.nih.gov/pubmed/28951736
Brain waves with frequency between 15-30 Hz seen on EEG during wakefulness and mental activity.
Beta Activity
Beta Rhythm
http://www.case.edu/EpSO.owl#BetaActivity
true
Brain waves with frequency between 15-30 Hz seen on EEG during wakefulness and mental activity.
https://www.ncbi.nlm.nih.gov/mesh/D001611
https://www.ncbi.nlm.nih.gov/pubmed/28951736
Brain waves seen on EEG characterized by a high amplitude and a frequency of 4 Hz and below. They are considered the "deep sleep waves" observed during sleep in dreamless states, infancy, and in some brain disorders.
Delta Rhythm
http://www.case.edu/EpSO.owl#DeltaRhythm
https://emedicine.medscape.com/article/1139332-overview#a1
true
Brain waves seen on EEG characterized by a high amplitude and a frequency of 4 Hz and below. They are considered the "deep sleep waves" observed during sleep in dreamless states, infancy, and in some brain disorders.
https://www.ncbi.nlm.nih.gov/mesh/D003700
https://www.ncbi.nlm.nih.gov/pubmed/23515147
Adjusting the quantity and quality of food intake to improve health status of an individual. This term does not include the methods of food intake (Nutritional support).
Diet Therapy
true
Adjusting the quantity and quality of food intake to improve health status of an individual. This term does not include the methods of food intake (Nutritional support).
https://www.ncbi.nlm.nih.gov/mesh/68004035
The consumption of edible substances.
Eating
https://n.neurology.org/content/86/16_Supplement/P6.367
true
true
The consumption of edible substances.
https://www.ncbi.nlm.nih.gov/mesh/68004435
Eidetic imagery or childhood preoccupation is an activity engaged in by some children who are able to enjoy bringing vivid visual images into their mind allowing them to play and interact in an imaginary visual world.
Eidetic Imagery
true
Eidetic imagery or childhood preoccupation is an activity engaged in by some children who are able to enjoy bringing vivid visual images into their mind allowing them to play and interact in an imaginary visual world.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#eidetic
A regimen or plan of physical activities designed and prescribed for specific therapeutic goals. Its purpose is to restore normal musculoskeletal function or to reduce pain caused by diseases or injuries.
Exercise Therapy
https://www.betterhealth.vic.gov.au/health/ConditionsAndTreatments/epilepsy-and-exercise
true
A regimen or plan of physical activities designed and prescribed for specific therapeutic goals. Its purpose is to restore normal musculoskeletal function or to reduce pain caused by diseases or injuries.
https://www.ncbi.nlm.nih.gov/mesh/D005081
Emergency care or treatment given to a person who suddenly becomes ill or injured before full medical services become available.
First Aid
https://www.epilepsy.com/learn/seizure-first-aid-and-safety/adapting-first-aid-plans/seizure-first-aid
true
Emergency care or treatment given to a person who suddenly becomes ill or injured before full medical services become available.
https://www.ncbi.nlm.nih.gov/mesh/D005392
Movement of a part of the body for the purpose of communication.
Gestures
true
true
Movement of a part of the body for the purpose of communication.
https://www.ncbi.nlm.nih.gov/mesh/D005868
A curved elongated ridge that extends over the floor of the descending horn of each lateral ventricle of the brain and consists of gray matter covered on the ventricular surface with white matter; The hippocampus is a part of the temporal lobe, which has a well established role in learning, memory and emotion.
Hippocampus
http://www.case.edu/EpSO.owl#Hippocampus
A curved elongated ridge that extends over the floor of the descending horn of each lateral ventricle of the brain and consists of gray matter covered on the ventricular surface with white matter; The hippocampus is a part of the temporal lobe, which has a well established role in learning, memory and emotion.
http://purl.obolibrary.org/obo/BTO_0000601
The desire for food generated by a sensation arising from the lack of food in the stomach.
Hunger
https://my.clevelandclinic.org/health/diseases/17778-temporal-lobe-seizures
true
true
The desire for food generated by a sensation arising from the lack of food in the stomach.
https://www.ncbi.nlm.nih.gov/mesh/68006815
https://www.ncbi.nlm.nih.gov/pubmed/15608956
Standardized tests that measure the present general ability or aptitude for intellectual performance.
Intelligence Tests
true
Standardized tests that measure the present general ability or aptitude for intellectual performance.
https://www.ncbi.nlm.nih.gov/mesh/D007361
https://www.ncbi.nlm.nih.gov/pubmed/28288363
Laboratory tests used to evaluate how well the kidneys are working through examination of blood and urine.
renal function tests
Kidney Function Tests
true
Laboratory tests used to evaluate how well the kidneys are working through examination of blood and urine.
https://www.ncbi.nlm.nih.gov/mesh/D007677
https://www.ncbi.nlm.nih.gov/pubmed/2871721
The repeated weak excitation of brain structures, that progressively increases sensitivity to the same stimulation. Over time, this can lower the threshold required to trigger seizures.
Kindling
Kindling model
true
The repeated weak excitation of brain structures, that progressively increases sensitivity to the same stimulation. Over time, this can lower the threshold required to trigger seizures.
https://www.ncbi.nlm.nih.gov/mesh/D007696
An involuntary expression of merriment and pleasure; it includes the patterned motor responses as well as the inarticulate vocalization.
laughing
Laughter
https://www.epilepsy.com/learn/types-seizures/gelastic-and-dacrystic-seizures
true
true
An involuntary expression of merriment and pleasure; it includes the patterned motor responses as well as the inarticulate vocalization.
https://www.ncbi.nlm.nih.gov/mesh/68007845
Blood tests that are used to evaluate how well a patient's liver is working and also to help diagnose liver conditions.
Liver Function Tests
https://www.webmd.com/epilepsy/guide/epilepsy-blood-test
true
Blood tests that are used to evaluate how well a patient's liver is working and also to help diagnose liver conditions.
https://www.ncbi.nlm.nih.gov/mesh/D008111
Investigative technique commonly used during electroencephalography in which a series of bright light flashes or visual patterns are used to elicit brain activity.
Noachter 1999 Photic Stimulation
Photic Stimulation
true
Investigative technique commonly used during electroencephalography in which a series of bright light flashes or visual patterns are used to elicit brain activity.
https://www.ncbi.nlm.nih.gov/mesh/D010775
Non-acceptance, negative attitudes, hostility or excessive criticism of the individual which may precipitate feelings of rejection.
Rejection (Psychology)
true
Non-acceptance, negative attitudes, hostility or excessive criticism of the individual which may precipitate feelings of rejection.
https://www.ncbi.nlm.nih.gov/mesh/D012059
https://www.ncbi.nlm.nih.gov/pubmed/16059497
The state of being deprived of sleep under experimental conditions, due to life events, or from a wide variety of pathophysiologic causes such as medication effect, chronic illness, psychiatric illness, or sleep disorder.
Sleep Deprivation
true
The state of being deprived of sleep under experimental conditions, due to life events, or from a wide variety of pathophysiologic causes such as medication effect, chronic illness, psychiatric illness, or sleep disorder.
https://www.ncbi.nlm.nih.gov/mesh/D012892
Treatment for individuals with speech defects and disorders that involves counseling and use of various exercises and aids to help the development of new speech habits.
Speech Therapy
https://www.asdclinic.co.uk/conditions/epilepsy/speech-and-language-therapy-for-epilepsy.php
true
Treatment for individuals with speech defects and disorders that involves counseling and use of various exercises and aids to help the development of new speech habits.
https://www.ncbi.nlm.nih.gov/mesh/D013070
https://www.ncbi.nlm.nih.gov/pubmed/3064627
Brain waves characterized by a frequency of 4-7 Hz, usually observed in the temporal lobes when the individual is awake, but relaxed and sleepy.
Theta Rhythm
http://www.case.edu/EpSO.owl#ThetaActivity
https://emedicine.medscape.com/article/1139332-overview#a1
true
Brain waves characterized by a frequency of 4-7 Hz, usually observed in the temporal lobes when the individual is awake, but relaxed and sleepy.
https://www.ncbi.nlm.nih.gov/mesh/D013826
https://www.ncbi.nlm.nih.gov/pubmed/10908505
A major orthodox system of Hindu philosophy based on Sankhya (metaphysical dualism) but differing from it in being theistic and characterized by the teaching of raja-yoga as a practical method of liberating the self. It includes a system of exercises for attaining bodily or mental control and well-being with liberation of the self and union with the universal spirit.
Yoga
true
A major orthodox system of Hindu philosophy based on Sankhya (metaphysical dualism) but differing from it in being theistic and characterized by the teaching of raja-yoga as a practical method of liberating the self. It includes a system of exercises for attaining bodily or mental control and well-being with liberation of the self and union with the universal spirit.
https://www.ncbi.nlm.nih.gov/mesh/68015013
https://www.ncbi.nlm.nih.gov/pubmed/13789853
Traumatic injuries to the cranium where the integrity of the skull is not compromised and no bone fragments or other objects penetrate the skull and dura mater. This frequently results in mechanical injury being transmitted to intracranial structures which may produce traumatic brain injuries, hemorrhage, or cranial nerve injuries.
closed head injury
Head Injuries, Closed
true
Traumatic injuries to the cranium where the integrity of the skull is not compromised and no bone fragments or other objects penetrate the skull and dura mater. This frequently results in mechanical injury being transmitted to intracranial structures which may produce traumatic brain injuries, hemorrhage, or cranial nerve injuries.
https://www.ncbi.nlm.nih.gov/mesh/D016489
https://www.ncbi.nlm.nih.gov/pubmed/14630489
The use of fragrances and essences from plants to affect or alter a person's mood or behavior and to facilitate physical, mental, and emotional well-being. The chemicals comprising essential oils in plants has a host of therapeutic properties and has been used historically in Africa, Asia, and India. Its greatest application is in the field of alternative medicine.
Aromatherapy
true
The use of fragrances and essences from plants to affect or alter a person's mood or behavior and to facilitate physical, mental, and emotional well-being. The chemicals comprising essential oils in plants has a host of therapeutic properties and has been used historically in Africa, Asia, and India. Its greatest application is in the field of alternative medicine.
https://www.ncbi.nlm.nih.gov/mesh/Aromatherapy
Congenital structural deformities, malformations, or other abnormalities of the cranium and facial bones.
Craniofacial Abnormalities
https://medlineplus.gov/craniofacialabnormalities.html
true
Congenital structural deformities, malformations, or other abnormalities of the cranium and facial bones.
https://www.ncbi.nlm.nih.gov/mesh/68019465
https://www.ncbi.nlm.nih.gov/pubmed/26835338
A neurosurgical procedure that removes or disconnects the epileptogenic cerebral cortex of a hemisphere. Hemispherectomy is usually performed for patients with intractable unilateral epilepsy due to malformations of cortical development or brain lesions. Depending on the epileptogenic area in the hemisphere, cortical removal can be total or partial.
Hemispherectomy
true
A neurosurgical procedure that removes or disconnects the epileptogenic cerebral cortex of a hemisphere. Hemispherectomy is usually performed for patients with intractable unilateral epilepsy due to malformations of cortical development or brain lesions. Depending on the epileptogenic area in the hemisphere, cortical removal can be total or partial.
https://www.ncbi.nlm.nih.gov/mesh/D038421
https://www.ncbi.nlm.nih.gov/pubmed/30760973
A course of food intake that is high in fats and low in carbohydrates. This diet provides sufficient proteins for growth but insufficient amount of carbohydrates for the energy needs of the body. A ketogenic diet generates 80-90% of caloric requirements from fats and the remainder from proteins.
Ketogenic Diet
true
A course of food intake that is high in fats and low in carbohydrates. This diet provides sufficient proteins for growth but insufficient amount of carbohydrates for the energy needs of the body. A ketogenic diet generates 80-90% of caloric requirements from fats and the remainder from proteins.
https://www.ncbi.nlm.nih.gov/mesh/D055423
https://www.ncbi.nlm.nih.gov/pubmed/22826811
An adjunctive treatment for partial epilepsy and refractory depression that delivers electrical impulses to the brain via the vagus nerve. A battery implanted under the skin supplies the energy.
Vagus Nerve Stimulation
true
An adjunctive treatment for partial epilepsy and refractory depression that delivers electrical impulses to the brain via the vagus nerve. A battery implanted under the skin supplies the energy.
https://www.ncbi.nlm.nih.gov/mesh/D055536
An endophenotype (also known as intermediate phenotype) is a quantitative biological trait that is reliable in reflecting the function of a discrete biological system and is reasonably heritable, and as such is more closely related to the root cause of the disease than the broad clinical phenotype.
Endophenotypes
true
An endophenotype (also known as intermediate phenotype) is a quantitative biological trait that is reliable in reflecting the function of a discrete biological system and is reasonably heritable, and as such is more closely related to the root cause of the disease than the broad clinical phenotype.
https://www.sciencedirect.com/topics/neuroscience/endophenotype
Wave-like oscillations of electric potential between parts of the brain recorded by EEG.
Noachter 1999 Brain Wave
Brain Waves
true
Wave-like oscillations of electric potential between parts of the brain recorded by EEG.
https://www.ncbi.nlm.nih.gov/mesh/D058256
https://www.ncbi.nlm.nih.gov/pubmed/28214547
Pathological processes or diseases where cerebral MICROVESSELS show abnormalities. They are often associated with aging, hypertension and risk factors for lacunar infarcts.
Cerebral Small Vessel Diseases
true
Pathological processes or diseases where cerebral MICROVESSELS show abnormalities. They are often associated with aging, hypertension and risk factors for lacunar infarcts.
https://www.ncbi.nlm.nih.gov/mesh/D059345
Non-invasive methods of visualizing the central nervous system, especially the brain, by various imaging modalities.
Neuroimaging
true
Non-invasive methods of visualizing the central nervous system, especially the brain, by various imaging modalities.
https://www.ncbi.nlm.nih.gov/mesh/68059906
Methods for visualizing regional blood flow, metabolic, electrical, or other physiological activities in the central nervous system using various imaging modalities.
Neuroimaging Test Functional
Functional Neuroimaging
true
Methods for visualizing regional blood flow, metabolic, electrical, or other physiological activities in the central nervous system using various imaging modalities.
https://www.ncbi.nlm.nih.gov/mesh/68059907
https://www.ncbi.nlm.nih.gov/books/NBK2609/
Clinical or physiological indicators that precede the onset of disease.
prodrome
Prodromal Symptoms
true
Clinical or physiological indicators that precede the onset of disease.
https://www.ncbi.nlm.nih.gov/mesh/D062706
https://www.ncbi.nlm.nih.gov/pubmed/24686330
Brain waves characterized by a relatively high voltage or amplitude and a frequency of approximately 30-100 Hz. They are primarily observed during network engagement and sensory processing activities, during both waking and sleeping states.
Gamma Rhythm
true
true
Brain waves characterized by a relatively high voltage or amplitude and a frequency of approximately 30-100 Hz. They are primarily observed during network engagement and sensory processing activities, during both waking and sleeping states.
http://ncbi.nlm.nih.gov/mesh/D065818
A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.
sensitivity
quality
PATO:0000085
sensitivity toward
A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.
PATO:0000137
angular placement
quality
amount of rotation
angle
angular magnitude
plane angle
PATO:0000133
orientation
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATO:0001032
PATO:0001631
location
placement
relational spatial quality
quality
PATO:0000140
position
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
quality
PATO:0000161
rate
A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy.
https://www.ncbi.nlm.nih.gov/pubmed/28532712
quality
PATO:0000927
photosensitivity
true
true
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATO:0002079
Wikipedia:Physical_property
relational physical quality
quality
PATO:0001018
physical quality
A quality which inheres in an process.
PATO:0001239
PATO:0001240
quality of a process
quality of occurrent
quality of process
relational quality of occurrent
quality
PATO:0001236
See comments of relational quality of a physical entity.
process quality
A quality which inheres in a continuant.
PATO:0001237
PATO:0001238
snap:Quality
monadic quality of a continuant
multiply inhering quality of a physical entity
quality of a continuant
quality of a single physical entity
quality of an object
quality of continuant
monadic quality of an object
monadic quality of continuant
quality
PATO:0001241
Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles.
physical object quality
A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes.
quality
PATO:0001912
physiological state
A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue.
https://www.ncbi.nlm.nih.gov/pubmed/32154929
quality
PATO:0001913
ictal
true
true
A quality that inheres in an entire organism or part of an organism.
quality
PATO:0001995
organismal quality
george
2009-06-05T09:16:46Z
quality
PATO:0002062
physical quality of a process
A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body.
george
2009-10-13T06:38:53Z
quality
PATO:0002131
abduction
true
An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity.
george
2010-01-14T04:45:18Z
quality
mislocalised to
PATO:0002168
displaced to
A pathway is a set of inter-connected reactions and interactions whose delineation and scope are used as a model for exploring and studying, describing and understanding the working of and relationships between biomolecules within a context.
pathway
PW:0000001
pathway
The mitogen -activated protein kinase pathway groups several serine/threonine protein kinases mediated cascades in response to a number of extracellular stimuli. A characteristic feature of these cascades is the presence of at least three kinases in series leading to the activation of a multifunctional MAP kinase.
https://www.ncbi.nlm.nih.gov/pubmed/26677173
pathway
KEGG:04010
MAPK signaling pathway
PW:0000007
mitogen activated protein kinase signaling pathway
true
The Immune response pathways mediate the defense of host cells against infection and injury. The first line of defense is provided by the phylogenetically older innate immune response. The later, more versatile response is provided by the pathways of adaptive immunity: the B cell mediated humoral and the T cell mediated cellular or cell-mediated responses.
https://www.ncbi.nlm.nih.gov/pubmed/27346214
pathway
immune response
PW:0000023
immune response pathway
true
Inflammation is the cellular response of the innate immune system to infection or injury. Sensing of infection by pattern recognition receptors triggers signaling cascades leading to the expression of mediator genes such as the pro-inflammatory cytokines.
https://www.ncbi.nlm.nih.gov/pubmed/30912766
pathway
CLR signaling pathway
PW:0000024
inflammatory response pathway
true
Long-term potentiation (LTP) is a strengthening of the synapse that can last from hours to days and months. It is thought to underlie information storage and constitute the cellular basis of learning and memory. LTP engages numerous cascades of events on either side of the synapse and is accompanied by changes in gene expression.
https://www.ncbi.nlm.nih.gov/pubmed/29467619
pathway
KEGG:04720
LTP
PW:0000060
long term potentiation
true
Those metabolic reactions involved in the degradation of lysine. In mammals, lysine is metabolized to acetyl-CoA. A derivative of lysine, allysine, is used in the production of elastin and collagen.
https://www.ncbi.nlm.nih.gov/pubmed/30767241
pathway
KEGG:00310
SMP:00037
PW:0000073
lysine degradation pathway
true
A pathway that mediates or facilitates the movement of biochemical material, organic and inorganic substances and/or drugs.
https://www.ncbi.nlm.nih.gov/pubmed/23252947
pathway
PW:0000103
transport pathway
true
Those metabolic reactions involving vitamin B6 - a water-soluble vitamin that exists in several forms. Vitamin B6 is required for many enzymatic reactions as the active pyridoxal 5'-phosphate (PLP) form. A number of organisms can carry out de novo synthesis of vitamin B6; humans derive it from diet.
https://www.ncbi.nlm.nih.gov/pubmed/24114605
https://www.ncbi.nlm.nih.gov/pubmed/30767241
vitamin B6 metabolism
pathway
KEGG:00750
SMP:00017
pyridoxine metabolic pathway
PW:0000138
vitamin B6 metabolic pathway
true
mTOR signaling pathway regulates cellular processes such as translation, ribosome biogenesis, cell growth and autophagy and is regulated or responds to growth factors, energy metabolites and/or levels of nutrients.
https://www.ncbi.nlm.nih.gov/pubmed/29359340
pathway
KEGG:04150
PID:200096
PW:0000180
mTOR signaling pathway
true
Notch signaling pathway regulates processes involved in early embryonic development. It plays an important role in cell fate determination. Target genes of Notch have been implicated in angiogenesis, somitogenesis, gliogenesis. Deregulation of the Notch signaling pathway underlies a broad spectrum of diseases and clinical conditions.
https://www.ncbi.nlm.nih.gov/pubmed/29737480
Notch signaling
pathway
KEGG:04330
PID:200015
PW:0000204
Notch signaling pathway
true
The innate immune response - a universal and ancient form of host defense against infection - is a first line of response to various pathogens and also to damaged cells. It plays a role in stimulating adaptive immunity; molecules generated during innate responses act as second signals that can impact on both the magnitude and the nature of the adaptive response.
https://www.ncbi.nlm.nih.gov/pubmed/26260962
pathway
innate immunity
PW:0000234
innate immune response pathway
true
Those pathways involved in the degradation of proteins.
https://www.ncbi.nlm.nih.gov/pubmed/24914213
pathway
Protein degradation
PW:0000325
protein degradation pathway
true
The reelin signaling pathway regulates neuronal positioning and may also play a role in synaptic plasticity. The reelin gene appears to be downregulated in schizophrenic brains but the link between the reelin pathway and the disease remains to be established.
https://www.ncbi.nlm.nih.gov/pubmed/29512697
pathway
PID:200062
PW:0000388
Reelin signaling pathway
true
Brain-derived neurotrophic factor (BDNF) signaling pathway plays important roles in the growth, differentiation and survival of neurons, particularly the striatal neurons. BDNF signals via the tropomyosin-related kinase receptor type B (TrkB) to activate PKC, PI3K-AKT and MAPK/ERK intracellular pathways. Impaired BDNF signaling contributes to the pathogenesis of conditions such as Huntington Disease (HD) and psychiatric disorders. Upregulation on the other hand, is associated with several malignancies.
https://www.ncbi.nlm.nih.gov/pubmed/30262417
pathway
BDNF signaling pathway
PW:0000572
brain-derived neurotrophic factor signaling pathway
true
Phosphatidylinositol kinases represent a family of lipid kinases that phosphorylate the 3' position of the inositol ring in target substrates. They are grouped into three classes: class I further subdivided into subclass A and B, class II and class III. By far the best known and characterized is class I, particularly IA that signals downstream of receptor tyrosine kinases and engages the Akt family of kinases.
https://www.ncbi.nlm.nih.gov/pubmed/17910583
PI3K-pathway
phosphatidylinositol 3-kinase pathway - give exact synonym
pathway
KEGG:04070
PI3K signaling pathway
phosphoinositide 3-kinase signaling pathway
PW:0000595
phosphatidylinositol 3-kinase signaling pathway
true
The pharmacokinetics and the pharmacodynamics pathway elicited by the administration of specific drugs. The systems involved in drug processing and responses are also those handling exogenous, xenobiotic compounds in the cellular detoxification pathway. The distinction between a random encounter with a foreign compound and the processing of a substance administered for treatment along with the importance of genetic variation for the individual responses to particular drugs warrant their separate consideration.
VPetri
2010-03-15T11:01:15Z
https://www.ncbi.nlm.nih.gov/pubmed/25221392
pathway
drug metabolism
PW:0000754
drug pathway
true
Glutamate signaling via the ionotropic AMPA or NMDA and several metabotropic receptors plays important roles in the modulation of synaptic plasticity, long term depression or potentiation, and in learning and memory.
VPetri
2011-03-09T11:57:08Z
https://www.ncbi.nlm.nih.gov/pubmed/25433904
glutamatergic signaling
pathway
KEGG:04724
PW:0000844
glutamate signaling pathway
true
Gamma-aminobutyric acid signals at inhibitory synapses via the type A receptor, which is part of a ligand-gated ion channel and the type B receptors which are metabotropic, G protein-coupled receptors.
VPetri
2011-03-09T02:10:16Z
https://www.ncbi.nlm.nih.gov/pubmed/28074534
pathway
KEGG:04727
PW:0000848
gamma-aminobutyric acid signaling pathway
true
Calcium signaling impacts on a large and diverse spectrum of cellular processes such as gene expression and cell death, proliferation, muscle contraction and energy metabolism, learning, memory and synaptic plasticity. Calcium acts in signal transduction as a first as well as a second messenger. Calcium transport, which controls and maintains the calcium gradient, and calcium signaling, which the gradient promotes, are inextricably connected in the fabric of calcium homeostasis.
VPetri
2012-11-05T10:53:28Z
https://www.ncbi.nlm.nih.gov/pubmed/24723228
Calcium signaling
pathway
KEGG:04020
PW:0001140
calcium/calcium-mediated signaling pathway
true
https://www.ncbi.nlm.nih.gov/pubmed/26254980
In genetically epilepsy-prone rats (GEPRs), 100% of the animals present recurrent generalized non-convulsive seizures characterized by bilateral and synchronous spike-and-wave discharges accompanied with behavioral arrest, staring and sometimes twitching of the vibrissae.
rat_strain_ontology
RGD ID: 68042
RS:0000274
GEPR
true
In genetically epilepsy-prone rats (GEPRs), 100% of the animals present recurrent generalized non-convulsive seizures characterized by bilateral and synchronous spike-and-wave discharges accompanied with behavioral arrest, staring and sometimes twitching of the vibrissae.
https://www.ncbi.nlm.nih.gov/pubmed/25312505
rat_strain_ontology
RS:0000457
rat strain
Rat strains carrying mutated alleles, spontaneously occurred, chemical-induced, genome-edited and others, are included in the mutant strain.
rat_strain_ontology
RS:0000461
mutant strain
Genetic Absence Epilepsy Rats from Strasbourg (GAERS) is a genetic model of absence seizures developed by inbreeding Wistar colonies that displayed spontaneous spike-and-wave discharges.
rat_strain_ontology
RS:0000480
GAERS
true
Genetic Absence Epilepsy Rats from Strasbourg (GAERS) is a genetic model of absence seizures developed by inbreeding Wistar colonies that displayed spontaneous spike-and-wave discharges.
https://www.ncbi.nlm.nih.gov/pubmed/26742792
P77PMC rat is a breed of rat with congenital audiogenic seizure.
rat_strain_ontology
RGD ID: 68115
RS:0000637
P77PMC
true
P77PMC rat is a breed of rat with congenital audiogenic seizure.
https://www.ncbi.nlm.nih.gov/pubmed/8413853
Inbred Strains are produced by brother x sister mating for 20 or more consecutive generations, and individuals of the strain can be traced to a single ancestral pair at the 20th or subsequent generation.
RNigam
2010-02-10T12:00:00Z
rat_strain_ontology
RS:0000765
inbred strain
WAG/Rij rats, originally developed as an animal model of human absence epilepsy, share many electroencephalography and behavioral characteristics resembling absence epilepsy in humans, including the similarity of action of various antiepileptic drugs.
rat_strain_ontology
RGD ID: 737924
RS:0000969
WAG/Rij
true
WAG/Rij rats, originally developed as an animal model of human absence epilepsy, share many electroencephalography and behavioral characteristics resembling absence epilepsy in humans, including the similarity of action of various antiepileptic drugs.
https://www.ncbi.nlm.nih.gov/pubmed/21093520
GRY inbred strain exhibit ataxia, inherited in an autosomal recessive manner and a missense (M251K) mutation in the alpha (1a) subunit of the P/Q-type voltage-gated Ca2+ channel gene Cacna1a was identified by positional cloning.
rat_strain_ontology
RGD ID: 1599759
groggy rat
RS:0001318
GRY/Idr
true
GRY inbred strain exhibit ataxia, inherited in an autosomal recessive manner and a missense (M251K) mutation in the alpha (1a) subunit of the P/Q-type voltage-gated Ca2+ channel gene Cacna1a was identified by positional cloning.
https://www.ncbi.nlm.nih.gov/pubmed/25312505
RNigam
2010-01-05T12:00:00Z
https://www.ncbi.nlm.nih.gov/pubmed/25312505
Established by ENU mutagenesis. A missense mutant N1417H (4246A>G)was identified in the model.
rat_strain_ontology
Boo
F344-Ker/Kyo
Kyoto Epileptic Rat
NBRP Rat No: 0458
RGD ID: 2314163
autosomal dominant myokymia and seizures rat
RS:0001872
F344-Adms/Kyo
true
Established by ENU mutagenesis. A missense mutant N1417H (4246A>G)was identified in the model.
https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2306042
RNigam
2010-01-05T12:00:00Z
Scn1a-targeted rats carrying a missense mutation (N1417H) in the third pore region of the sodium channel were developed by gene-driven ENU mutagenesis.
rat_strain_ontology
F344-Scn1aKyo811/Kyo
NBRP Rat No: 0455
RGD ID: 2306042
RS:0001877
F344-Scn1am1Kyo
true
Scn1a-targeted rats carrying a missense mutation (N1417H) in the third pore region of the sodium channel were developed by gene-driven ENU mutagenesis.
https://www.ncbi.nlm.nih.gov/pubmed/25312505
RNigam
2014-04-23T09:05:21Z
https://www.ncbi.nlm.nih.gov/pubmed/25312505
Developed by gene driven ENU mutagenesis in F344/NSlc rats. Lgi1-mutant rats carrying a missense mutation (c.1154 T > G)(L385R).
rat_strain_ontology
Lgi1 mutant rat
NBRP Rat No: 0656
RGD ID: 8552275
RS:0003717
F344-Lgi1m1Kyo
true
Developed by gene driven ENU mutagenesis in F344/NSlc rats. Lgi1-mutant rats carrying a missense mutation (c.1154 T > G)(L385R).
https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=8552275
sjwang
2017-02-21T09:41:16Z
https://www.ncbi.nlm.nih.gov/pubmed/25312505
Genetically Epilepsy-Prone Rats (GEPR-9) have severe levels of seizure predisposition. This colony was bred to exhibit clonic convulsions (severe seizures with an ARS of 9) following a single wild running phase in response to sound.
rat_strain_ontology
RGD ID: 12738218
RS:0004315
SD-GEPR-9
true
Genetically Epilepsy-Prone Rats (GEPR-9) have severe levels of seizure predisposition. This colony was bred to exhibit clonic convulsions (severe seizures with an ARS of 9) following a single wild running phase in response to sound.
https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12738218
sjwang
2017-11-14T14:20:23Z
https://www.ncbi.nlm.nih.gov/pubmed/25312505
Genetically Epilepsy-Prone Rats (GEPR-3) have moderate levels of seizure predisposition. This colony,initially referred to as an AGS (audiogenic response score) colony, was bred to exhibit clonic convulsions (moderate seizures with an ARS of 3) following a single wild running phase in response to sound.
rat_strain_ontology
RGD ID: 13450922
RS:0004561
SD-GEPR-3
true
Genetically Epilepsy-Prone Rats (GEPR-3) have moderate levels of seizure predisposition. This colony,initially referred to as an AGS (audiogenic response score) colony, was bred to exhibit clonic convulsions (moderate seizures with an ARS of 3) following a single wild running phase in response to sound.
https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=13450922
sjwang
2019-07-12T14:00:53Z
https://www.ncbi.nlm.nih.gov/pubmed/28506440
The Wistar audiogenic rat (WAR) is an animal model of tonic-clonic epileptic seizures, developed after genetic selection by sister × brother inbreeding of Wistar rats susceptible to sound stimuli.
RGD ID: 14695083
Wistar audiogenic rat
rat_strain_ontology
RS:0004742
W/Lnne
true
The Wistar audiogenic rat (WAR) is an animal model of tonic-clonic epileptic seizures, developed after genetic selection by sister × brother inbreeding of Wistar rats susceptible to sound stimuli.
https://www.ncbi.nlm.nih.gov/pubmed/30517024
Ataxia is a neurological and physiological symptom characterized by an inability to coordinate voluntary muscular movements that is symptomatic of some nervous disorders.
uncoordination
symptoms
SYMP:0000005
ataxia
true
Confusion is a neurological and physiological symptom characterized by a disturbance of consciousness characterized by inability to engage in orderly thought or by lack of power to distinguish, choose, or act decisively.
symptoms
SYMP:0000016
confusion
true
Dehydration is a nutrition, metabolism, and development symptom characterized by an abnormal depletion of body fluids.
symptoms
SYMP:0000020
dehydration
https://www.epilepsy.com/learn/about-epilepsy-basics/what-are-risk-factors
true
Depression (major depressive disorder) is a common and serious medical illness that negatively affects how you feel, the way you think and how you act. Fortunately, it is also treatable. Depression causes feelings of sadness and/or a loss of interest in activities once enjoyed. It can lead to a variety of emotional and physical problems and can decrease a person’s ability to function at work and at home.
symptoms
SYMP:0000022
depression
http://www.case.edu/EpSO.owl#Depression
https://www.epilepsy.com/living-epilepsy/healthy-living/emotional-health/overview-depression
true
Depression (major depressive disorder) is a common and serious medical illness that negatively affects how you feel, the way you think and how you act. Fortunately, it is also treatable. Depression causes feelings of sadness and/or a loss of interest in activities once enjoyed. It can lead to a variety of emotional and physical problems and can decrease a person’s ability to function at work and at home.
https://www.psychiatry.org/patients-families/depression/what-is-depression
https://www.ncbi.nlm.nih.gov/pubmed/11219629
symptoms
SYMP:0000051
doid/symp duplicate
hydrocephalus
true
Inflammation is a general symptom where there is a local response to cellular injury that is marked by capillary dilatation, leukocytic infiltration, redness, heat, pain, swelling, and often loss of function and that serves as a mechanism initiating the elimination of noxious agents and of damaged tissue.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3378051/
symptoms
SYMP:0000061
inflammation
http://www.case.edu/EpSO.owl#Inflammation
true
Lethargy is a fatigue characterized as abnormal drowsiness.
symptoms
SYMP:0000075
lethargy
https://www.epilepsy.org.uk/info/wellbeing/fatigue
true
true
Meningoencephalitis is a nervous system symptom characterized as an inflammation of the brain and meninges.
The commonest etiologies for bacterial meningitis are meningococus, pneumococcus and haemophilus influenza B. Acute seizures may occur related to fever or to complications such as subdural collections, cerebritis or cerebral infarction. Immunization programs may reduce the incidence of specific bacterial meningitides.
bacterial meningitis or meningoencephalitis
symptoms
SYMP:0000089
doid/symp duplicate
https://www.ilae.org/guidelines/definition-and-classification
meningoencephalitis
true
The commonest etiologies for bacterial meningitis are meningococus, pneumococcus and haemophilus influenza B. Acute seizures may occur related to fever or to complications such as subdural collections, cerebritis or cerebral infarction. Immunization programs may reduce the incidence of specific bacterial meningitides.
https://www.epilepsydiagnosis.org/aetiology/infectious-groupoverview.html
Skin lesion is a skin and integumentary tissue symptom characterized as an abnormal change in structure of the skin that is especially circumscribed and well defined due to injury or disease.
https://www.ncbi.nlm.nih.gov/pubmed/25535236
symptoms
SYMP:0000092
skin lesion
true
A sensation perception where there is an unpleasant sensation that usually indicates the body is threatened or damaged. The sensation may be sharp or dull, short-lived or chronic, intermittent or continual, confined to one area or spread over the entire body.
symptoms
SYMP:0000099
pain
true
Seizures
seizure
symptoms
SYMP:0000124
seizure
Thirst is a general symptom characterized by a sensation of dryness in the mouth and throat associated with a desire for liquids.
https://www.ncbi.nlm.nih.gov/pubmed/?term=30416962
symptoms
SYMP:0000156
thirst
true
symptoms
SYMP:0000183
muscle symptom
https://www.ncbi.nlm.nih.gov/pubmed/28139515
Discomfort feeling in abdomen
symptoms
SYMP:0000188
abdominal discomfort
Discomfort feeling in abdomen
https://www.ncbi.nlm.nih.gov/pubmed/30095344
A cardiac fibrillation consisting of a very rapid uncoordinated contractions of the atria of the heart resulting in a lack of synchronism between heartbeat and pulse beat.
https://www.ncbi.nlm.nih.gov/pubmed/22637287
https://www.ncbi.nlm.nih.gov/pubmed/22698381
AF
a-fib
auricular fibrillation
symptoms
SYMP:0000226
doid/symp duplicate
atrial fibrillation
true
Bradycardia is a cardiovascular system symptom consisting of a relatively slow heart action whether physiological or pathological.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468352/
symptoms
SYMP:0000231
bradycardia
true
true
symptoms
SYMP:0000254
dilated pupil
Arrhythmia is a cardiovascular system symptom consisting of an alteration in rhythm of the heartbeat either in time or force.
SYMP:0000288
SYMP:0000667
SYMP:0000668
abnormal heart beat
abnormal heart rhythm
dysrhythmia
heart rhythm symptom
symptoms
fluctuation of heart rate
SYMP:0000287
arrhythmia
Belching is a digestive system symptom involving the sudden expulsion of gas from the stomach through the mouth.
eructation
symptoms
SYMP:0000290
belching
true
Ptosis is a general symptom characterized by a sagging or prolapse of an organ or part.
droopiness
symptoms
SYMP:0000369
doid/symp duplicate
ptosis
true
true
symptoms
SYMP:0000387
head symptom
https://www.ncbi.nlm.nih.gov/pubmed/18539570
excessive pupil dilation
prolonged pupil dilation
symptoms
SYMP:0000396
mydriasis
true
true
Vertigo is a dizziness characterized by a specific type of dizziness, a major symptom of a balance disorder. It is the sensation of spinning or swaying while the body is stationary with respect to the surroundings.
symptoms
SYMP:0000399
vertigo
true
Bruise is a skin and integumentary tissue symptom characterized as an injury transmitted through unbroken skin to underlying tissue causing rupture of small blood vessels and escape of blood into the tissue with resulting discoloration.
bruises
bruising
contusion
ecchymosis
symptoms
SYMP:0000406
bruise
https://www.epilepsy.com/learn/seizure-first-aid-and-safety/staying-safe/types-injuries
true
Cataplexy is a muscle symptom characterized by a sudden loss of muscle control with retention of clear consciousness that follows a strong emotional stimulus (as elation, surprise, or anger) and is a characteristic symptom of narcolepsy.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4623123/
symptoms
SYMP:0000408
cataplexy
http://www.case.edu/EpSO.owl#Cataplexy
true
symptoms
SYMP:0000410
neurological and physiological symptom
Anxiety is a neurological and physiological symptom characterized by a painful or apprehensive uneasiness of mind usually over an impending or anticipated ill.
https://www.ncbi.nlm.nih.gov/pubmed/30698542
symptoms
SYMP:0000412
anxiety
true
Dysarthria is a neurological and physiological symptom characterized by a difficulty in articulating words due to disease of the central nervous system.
symptoms
SYMP:0000414
dysarthria
true
symptoms
SYMP:0000417
pupil symptom
A pain that is a leg pain in the calf or thigh which is caused by inadequate blood flow to the leg muscles brought on by leg exercise such as walking.
blockage of leg arteries
symptoms
SYMP:0000424
claudication
https://www.epilepsy.com/learn/types-seizures/atonic-seizures
true
Hypoventilation is a respiratory abnormality characterized by a deficient ventilation of the lungs that results in reduction in the oxygen content or increase in the carbon dioxide content of the blood or both.
https://www.ncbi.nlm.nih.gov/pubmed/22791548
symptoms
SYMP:0000428
hypoventilation
true
Paresthesia is a skin and integumentary tissue symptom characterized as a sensation of pricking, tingling, or creeping on the skin having no objective cause and usually associated with injury or irritation of a sensory nerve or nerve root.
https://www.ncbi.nlm.nih.gov/books/NBK2511/
Tingling
symptoms
SYMP:0000435
paresthesia
true
true
ICD9CM_2005:785.51
SyOID:10218
UMLS_CUI:C0036980
UMLS_ICD9CM_2005_AUI:A0243814
Cardiogenic shock (CS) is a condition in which a marked reduction in cardiac output and inadequate end-organ perfusion results from an array of cardiac insults, the most common of which is acute myocardial infarction. CS is a systemic disease involving a vicious cycle of inflammation, ischemia, and progressive myocardial dysfunction, which often results in death.
symptoms
SYMP:0000449
cardiogenic shock
https://www.epilepsy.com/learn/professionals/co-existing-disorders/cardiac-disorders
true
Cardiogenic shock (CS) is a condition in which a marked reduction in cardiac output and inadequate end-organ perfusion results from an array of cardiac insults, the most common of which is acute myocardial infarction. CS is a systemic disease involving a vicious cycle of inflammation, ischemia, and progressive myocardial dysfunction, which often results in death.
https://www.ncbi.nlm.nih.gov/pubmed/24188221
A cardiovascular system symptom that is characterized as a state of profound depression of the vital processes of the body that is characterized by pallor, rapid but weak pulse, rapid and shallow respiration, reduced total blood volume, and low blood pressure and that is caused usually by severe especially crushing injuries, hemorrhage, burns, or major surgery.
ICD9CM_2005:785.5
UMLS_CUI:C0159051
UMLS_ICD9CM_2005_AUI:A0284197
symptoms
SYMP:0000450
shock
Nausea is a digestive system symptom characterized by an uneasy or unsettled feeling in the stomach together with an urge to vomit.
ICD9CM_2005:787.02
SyOID:1173
UMLS_CUI:C0375548
UMLS_ICD9CM_2005_AUI:A0750850
symptoms
SYMP:0000458
nausea
https://www.webmd.com/epilepsy/guide/abdominal-epilepsy-in-children-and-adults
true
true
ICD9CM_2005:787
SyOID:5330
UMLS_CUI:C0159058
UMLS_ICD9CM_2005_AUI:A0284224
symptoms
SYMP:0000459
digestive system symptom
ICD9CM_2005:789
ICD9CM_2005:789.9
SyOID:12097
UMLS_CUI:C0159065
UMLS_ICD9CM_2005_AUI:A0284267
UMLS_ICD9CM_2005_AUI:A0284268
symptoms
SYMP:0000461
abdominal symptom
A symptom is a perceived change in function, sensation, loss, disturbance or appearance reported by a patient indicative of a disease.
SyOID:14974
symptoms
SYMP:0000462
symptom
true
ICD9CM_2005:783
SyOID:2644
UMLS_CUI:C0159041
UMLS_ICD9CM_2005_AUI:A0284163
symptoms
SYMP:0000473
nutrition, metabolism, and development symptom
ICD9CM_2005:781
SyOID:90
UMLS_CUI:C0159033
UMLS_ICD9CM_2005_AUI:A0284131
symptoms
SYMP:0000480
nervous system symptom
ICD9CM_2005:788
SyOID:2134
UMLS_CUI:C0476293
UMLS_ICD9CM_2005_AUI:A0284245
symptoms
SYMP:0000486
urinary system symptom
ICD9CM_2005:782
ICD9CM_2005:782.9
SyOID:2103
UMLS_CUI:C0159037
UMLS_ICD9CM_2005_AUI:A0284146
UMLS_ICD9CM_2005_AUI:A0284161
symptoms
SYMP:0000488
skin and integumentary tissue symptom
Urinary incontinence is a urinary system symptom characterized by the an inability of the body to control the evacuative functions.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885137/
https://www.ncbi.nlm.nih.gov/pubmed/23142708
ICD9CM_2005:788.3
ICD9CM_2005:788.30
SyOID:5372
UMLS_CUI:C0042024
UMLS_ICD9CM_2005_AUI:A0814766
UMLS_ICD9CM_2005_AUI:A6994675
incontinence
symptoms
SYMP:0000492
urinary incontinence
true
Aphasia is a nervous system symptom characterized by a loss or impairment of the power to use or comprehend words usually resulting from brain damage.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5639272/
ICD9CM_2005:784.3
SyOID:14727
UMLS_CUI:C0003537
UMLS_ICD9CM_2005_AUI:A0025556
inability to comprehend language
symptoms
SYMP:0000508
doid/symp duplicate
aphasia
true
true
Pallor is a skin and integumentary tissue symptom characterized as a deficiency of color especially of the face.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC531654/
ICD9CM_2005:782.61
SyOID:14889
UMLS_CUI:C0030232
UMLS_ICD9CM_2005_AUI:A0096956
paleness
symptoms
SYMP:0000510
pallor
true
true
Flushing is a skin and integumentary tissue symptom characterized as a markedly red flush in a persons face and often other areas of the skin, from various physiological conditions. Flushing is generally distinguished, despite a close physiological relation between them, from blushing, which is milder, generally restricted to the face or cheeks, and generally assumed to reflect embarrassment. Flushing is also a cardinal symptom of carcinoid syndrome the syndrome that results from hormones (often serotonin or histamine) being secreted into systemic circulation.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC531654/
ICD9CM_2005:782.62
SyOID:14890
UMLS_CUI:C0016382
UMLS_ICD9CM_2005_AUI:A0060138
symptoms
SYMP:0000511
flushing
true
true
Stridor is a respiratory system and chest symptom characterized by a harsh vibrating sound heard during respiration in cases of obstruction of the air passages.
ICD9CM_2005:786.1
SyOID:15070
UMLS_CUI:C0038450
UMLS_ICD9CM_2005_AUI:A0120146
symptoms
SYMP:0000513
stridor
true
ICD9CM_2005:786
SyOID:5868
UMLS_CUI:C0476271
UMLS_ICD9CM_2005_AUI:A0284200
symptoms
SYMP:0000514
respiratory system and chest symptom
Hiccough is a respiratory system and chest symptom characterized by a spasmodic inhalation with closure of the glottis accompanied by a peculiar sound.
https://www.ncbi.nlm.nih.gov/pubmed/28139515
ICD9CM_2005:786.8
SyOID:15071
UMLS_CUI:C0019521
UMLS_ICD9CM_2005_AUI:A0421293
symptoms
SYMP:0000515
hiccough
true
ICD9CM_2005:785
SyOID:2147
UMLS_CUI:C0159049
UMLS_ICD9CM_2005_AUI:A0284192
symptoms
SYMP:0000528
cardiovascular system symptom
Tachycardia is a cardiovascular system symptom consisting of a relatively rapid heart action whether physiological (as after exercise) or pathological.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC531654/
ICD9CM_2005:785.0
SyOID:16496
UMLS_CUI:C0039231
UMLS_ICD9CM_2005_AUI:A0804597
symptoms
SYMP:0000529
tachycardia
true
true
Palpitation is a cardiovascykar system symptom characterized by an abnormal awareness of the beating of the heart,whether it is too slow, too fast, irregular, or at its normal frequency when excited by violent exertion, strong emotion, or disease.
ICD9CM_2005:785.1
SyOID:16497
UMLS_CUI:C0030252
UMLS_ICD9CM_2005_AUI:A0004066
Palpitations
abnormal heart beats
symptoms
SYMP:0000530
palpitation
true
Cyanosis is a skin and integumentary tissue symptom characterized as a bluish or purplish discoloration (as of skin) due to deficient oxygenation of the blood.
ICD9CM_2005:782.5
SyOID:17346
UMLS_CUI:C0010520
UMLS_ICD9CM_2005_AUI:A0044296
symptoms
SYMP:0000537
cyanosis
https://www.epilepsy.com/connect/forums/living-epilepsy-adults/cyanosis
true
true
Nocturia is a urinary system symptom characterized by urination at night especially when excessive.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3481949/
ICD9CM_2005:788.43
SyOID:3049
UMLS_CUI:C0028734
UMLS_ICD9CM_2005_AUI:A0011475
nycturia
symptoms
SYMP:0000564
nocturia
http://www.case.edu/EpSO.owl#Nocturia
true
ICD9CM_2005:780.5
SyOID:3247
UMLS_CUI:C0037317
UMLS_ICD9CM_2005_AUI:A0246756
symptoms
SYMP:0000566
sleep disturbance
ICD9CM_2005:780
SyOID:777
UMLS_CUI:C0159028
UMLS_ICD9CM_2005_AUI:A0284119
symptoms
SYMP:0000567
general symptom
Insomnia is a sleep disturbance characterized by prolonged and usually abnormal inability to obtain adequate sleep.
ICD9CM_2005:780.52
SyOID:3766
UMLS_CUI:C0029645
UMLS_ICD9CM_2005_AUI:A0243733
agrypnia
symptoms
SYMP:0000571
insomnia
http://www.case.edu/EpSO.owl#Insomnia
https://www.epilepsysociety.org.uk/7-top-tips-better-sleep-epilepsy-and-insomnia
true
Hypersomnia is a sleep disturbance characterized by sleeping for excessive periods at intervals with intervening periods of normal duration of sleeping and waking.
ICD9CM_2005:780.54
SyOID:5380
UMLS_CUI:C0029637
UMLS_ICD9CM_2005_AUI:A0243739
symptoms
SYMP:0000582
hypersomnia
http://www.case.edu/EpSO.owl#Hypersomnia
https://www.ajmc.com/conferences/sleep-2013/epilepsy-and-sleep-defining-the-relationship
true
ICD9CM_2005:780.58
SyOID:5383
UMLS_CUI:C1455873
UMLS_ICD9CM_2005_AUI:A6995224
Sleep related rhythmic movement disorders include body rocking, rolling and head banging. These are usually benign exaggerations of presumed self-comforting movements or habits that many infants demonstrate in sleep wake transition as they fall asleep.
Sleep related rhythmic movement disorders
symptoms
SYMP:0000585
sleep related movement disorder
true
Sleep related rhythmic movement disorders include body rocking, rolling and head banging. These are usually benign exaggerations of presumed self-comforting movements or habits that many infants demonstrate in sleep wake transition as they fall asleep.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#sleep-disorder
ICD9CM_2005:784
SyOID:7123
UMLS_CUI:C0476247
UMLS_ICD9CM_2005_AUI:A0284173
symptoms
SYMP:0000597
head and neck symptom
ICD9CM_2005:786.0
SyOID:7239
UMLS_CUI:C0159053
UMLS_ICD9CM_2005_AUI:A0284202
symptoms
SYMP:0000598
respiratory abnormality
Apnea is a respiratory abnormality characterized by transient cessation of respiration whether normal (as in hibernating animals) or abnormal (as that caused by certain drugs).
ICD9CM_2005:786.03
SyOID:7243
UMLS_CUI:C0003578
UMLS_ICD9CM_2005_AUI:A0025648
symptoms
SYMP:0000600
apnea
true
Dizziness is a neurological and physiological symptom characterized by a sensation of unsteadiness accompanied by a feeling of movement within the head.
https://www.ncbi.nlm.nih.gov/books/NBK2609/
ICD9CM_2005:780.4
SyOID:7637
UMLS_CUI:C0476206
UMLS_ICD9CM_2005_AUI:A0243727
dizzy
symptoms
SYMP:0000610
dizziness
true
true
https://www.ncbi.nlm.nih.gov/pubmed/27638925
Memory deficits
symptoms
SYMP:0000719
memory impairment
true
Stroke is a nervous system symptom characterized by a sudden diminution or loss of consciousness, sensation, and voluntary motion caused by rupture or obstruction (as by a clot) of a blood vessel of the brain.
Stroke includes two main types, hemorrhagic and ischemic. Both types of stroke can cause acute seizures at the time of the acute event, as well as epilepsy as a long-term complication. In the elderly, cerebrovascular disease and stroke are the most common cause of acute seizures and epilepsy.
apoplexy
brain attack
cerebral accident
cerebrovascular accident
symptoms
SYMP:0000734
stroke
true
Stroke includes two main types, hemorrhagic and ischemic. Both types of stroke can cause acute seizures at the time of the acute event, as well as epilepsy as a long-term complication. In the elderly, cerebrovascular disease and stroke are the most common cause of acute seizures and epilepsy.
https://www.epilepsydiagnosis.org/aetiology/stroke-overview.html
Hypoesthesia is a general symptom where there is a diminished sensitivity to stimulation.
numbness
symptoms
SYMP:0000834
hypoesthesia
true
Chronic pain is a pain that can range from mild to severe, and continues beyond the expected healing phase.
https://www.ncbi.nlm.nih.gov/pubmed/20161538
symptoms
SYMP:0000837
chronic pain
true
Hematoma is a skin and integumentary tissue symptom characterized by a mass of usually clotted blood that forms in a tissue, organ, or body space as a result of a broken blood vessel generally the result of hemorrhage, or more specifically, internal bleeding.
symptoms
SYMP:0000874
hematoma
lschriml
2010-10-15T11:48:05Z
symptoms
SYMP:0000891
musculoskeletal system symptom
Sensation perception is a nervous system symptom where the information perceived by sensory receptors are interpreted.
lschriml
2010-10-15T11:54:30Z
symptoms
SYMP:0000892
sensation perception
An arrhythmia characterized by rapid, irregular, and unsynchronized contraction of muscle fibers within the heart.
symptoms
SYMP:0000898
cardiac fibrillation
Diaphoresis is a sweat characterized as excessive sweating commonly associated with shock and other medical emergency conditions.
https://www.ncbi.nlm.nih.gov/pubmed/29763181
profuse perspiration
symptoms
SYMP:0019152
diaphoresis
https://www.healthline.com/health/diaphoresis#sweat
true
true
symptoms
SYMP:0019163
eye symptom
Meningitis is a nervous system symptom characterized as an inflammation of the meninges and especially of the pia mater and the arachnoid.
https://www.ncbi.nlm.nih.gov/pubmed/18754955
symptoms
SYMP:0019173
meningitis
http://www.case.edu/EpSO.owl#Meningitis
true
A skin and integumentary tissue symptom characterized as the excretion of moisture in visible quantities through the opening of the sweat glands.
https://www.ncbi.nlm.nih.gov/pubmed/15562299
Sweating
perspire
symptoms
SYMP:0019175
sweaty
true
Malaise is a neurological and physiological symptom characterized as an indefinite feeling of debility or lack of health often indicative of or accompanying the onset of an illness.
symptoms
SYMP:0019176
malaise
https://www.epilepsy.com/learn/professionals/co-existing-disorders/metabolic-disorders/electrolyte-abnormalities/hyponatremia
true
true
Fatigue is a neurological and physiological symptom characterized by a weariness or exhaustion from labor, exertion, or stress.
symptoms
SYMP:0019177
fatigue
true
A nervous system symptom that involves, is related to, or emphasizes behavior.
behavioral symptom
A behavioral symptom that is characterized by a restricted rate of information processing by the brain.
Decreased attention
Impaired Attention
limited attention
https://www.epilepsy.com/learn/challenges-epilepsy/moods-and-behavior/mood-and-behavior-advanced/impaired-attention
true
A C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM).
fornix
https://www.ncbi.nlm.nih.gov/pubmed/23613463
BAMS:f
BIRNLEX:705
DHBA:10576
DMBA:17767
EMAPA:35352
FMA:61965
FMA:83865
HBA:9249
MA:0002747
NCIT:C32289
UMLS:C0152334
UMLS:C0458370
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=268
brain fornix
cerebral fornix
forebrain fornix
fornix of neuraxis
neuraxis fornix
uberon
fornix (column and body of fornix)
fornix cerebri
fornix hippocampus
hippocampus fornix
UBERON:0000052
fornix of brain
true
true
A tubular structure that contains, conveys body fluid, such as blood or lymph.
uberon
UBERON:0000055
vessel
Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome.
AAO:0010825
AEO:0000003
BILA:0000003
CARO:0000003
EHDAA2:0003003
EMAPA:0
FBbt:00007001
FMA:305751
FMA:67135
GAID:781
HAO:0000003
MA:0003000
MESH:D000825
TAO:0000037
TGMA:0001823
VHOG:0001759
XAO:0003000
ZFA:0000037
biological structure
connected biological structure
uberon
UBERON:0000061
anatomical structure
Anatomical structure that performs a specific function or group of functions [WP].
Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
CARO v1 does not include a generic 'organ' class, only simple and compound organ. CARO v2 may include organ, see https://github.com/obophenotype/caro/issues/4
BIRNLEX:4
CARO:0020004
EFO:0000634
EMAPA:35949
ENVO:01000162
FMA:67498
MA:0003001
NCIT:C13018
OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA
UMLS:C0178784
WBbt:0003760
uberon
anatomical unit
body organ
element
UBERON:0000062
organ
A multicellular structure that is a part of an organ.
currently defined in a very broad sense, may be replaced by more specific classes in the future
AAO:0011124
BIRNLEX:16
EFO:0000635
FMA:82472
cardinal organ part
uberon
regional part of organ
UBERON:0000064
organ part
Any part or collection of parts of the central or peripheral nervous system. Parts may span both CNS and PNS.
Melissa Haendel
2009-06-18T09:00:04Z
BIRNLEX:1157
NCIT:C13040
UMLS:C1518256
part of nervous system
uberon
UBERON:0000073
regional part of nervous system
A depression or fissure in the surface of an organ.
cjm
2009-04-09T06:23:22Z
uberon
UBERON:0000093
sulcus
Portion of tissue, that consists of single layer of cells connected to each other by cell junctions. Examples: layer of glial cells; epithelium.
consider adding to caro
layer
NCIT:C66831
layer of cells
uberon
cell sheath
sheath of cells
UBERON:0000119
cell layer
A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.
UBERON:0005163
CARO:0001001
FBbt:00005099
NLX:147821
funiculus
nerve fiber bundle
neural fiber bundle
uberon
UBERON:0000122
neuron projection bundle
A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO)
Anatomical structure consisting of a discrete aggregate of neuronal soma[GO][GO_REF:0000021].
Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in 'subcortical' because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in 'relatively compact' and 'distiguishable by histology' because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate.
nucleus
AEO:0000136
FMA:83686
NCIT:C13197
NLX:28443
nervous system nucleus
neuraxis nucleus
neuronal nucleus
nucleus of CNS
uberon
nucleus of neuraxis
UBERON:0000125
neural nucleus
A ridge on the cerebral cortex. It is generally surrounded by one or more sulci .
BTO:0002495
FMA:83874
NCIT:C32290
UMLS:C0458308
cerebral gyrus
gyrus of neuraxis
neuraxis gyrus
uberon
folia
folium
folium of brain
gyri
gyri of cerebrum
gyrus of cerebral hemisphere
gyrus of cerebrum
UBERON:0000200
gyrus
A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]
mucosal
FMA has mucosa vs region of mucosa; these are subtypes of Mucosa: Mucosa of gallbladder, tongue, .... The following are subtypes of Region of mucosa: Mucosa of zone of stomach, trachea, bronchus, dorsum of tongue.... Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately
AEO:0000199
BTO:0000886
CALOHA:TS-2031
EHDAA2_RETIRED:0003234
EV:0100382
FMA:85355
FMA:85358
GAID:297
MESH:D009092
NCIT:C13166
OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA
UMLS:C0026724
galen:Mucosa
mucosa of organ
mucosa of organ part
mucosal region
mucous membrane
organ mucosa
uberon
region of mucosa
tunica mucosa
UBERON:0000344
mucosa
Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996).
Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA][FMA:61842].
Se
septum
BAMS:SA
BAMS:SEP
BAMS:Sep
BAMS:Spt
BIRNLEX:963
BM:Tel-Spt
BTO:0002705
EMAPA:32837
FMA:61842
MA:0000924
MESH:A08.186.211.577.750
UMLS:C0752060
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=255
area septalis
septal area
septum (NN)
telencephalon septum
uberon
massa praecommissuralis
septal region
septum pellucidum (BNA,PNA)
septum telencephali
UBERON:0000446
septum of telencephalon
true
The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia
TODO - check MA
BAMS:FrA
BTO:0002807
DHBA:10172
EFO:0001384
EMAPA:35356
FMA:224850
GAID:676
MA:0000906
MESH:A08.186.211.730.885.213.270.700
NLXANAT:090801
prefrontal association cortex
uberon
frontal association cortex
prefrontal association complex
UBERON:0000451
prefrontal cortex
true
The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain.
https://www.ncbi.nlm.nih.gov/pubmed/23671345
BTO:0002858
FMA:242188
NCIT:C98712
UMLS:C0815008
cerebral medulla
uberon
subcortex
UBERON:0000454
cerebral subcortex
http://www.case.edu/EpSO.owl#SubcorticalTelecephalonSegment
true
Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.
lumen
space
AAO:0010110
AEO:0000005
BILA:0000005
CARO:0000005
EHDAA2:0003005
FBbt:00007017
FMA:5897
HAO:0000005
NCIT:C94478
TAO:0001668
TGMA:0001825
UMLS:C0524461
VHOG:0001728
XAO:0003190
ZFA:0001643
lumen space
uberon
anatomical spaces
UBERON:0000464
anatomical space
Anatomical entity that has mass.
AAO:0010264
AEO:0000006
BILA:0000006
CARO:0000006
EHDAA2:0003006
FBbt:00007016
FMA:67165
HAO:0000006
TAO:0001836
TGMA:0001826
VHOG:0001721
uberon
UBERON:0000465
material anatomical entity
Anatomical entity that has no mass.
AAO:0010265
AEO:0000007
BILA:0000007
CARO:0000007
EHDAA2:0003007
FBbt:00007015
FMA:67112
HAO:0000007
TAO:0001835
TGMA:0001827
VHOG:0001727
immaterial physical anatomical entity
uberon
UBERON:0000466
immaterial anatomical entity
Anatomical group that has its parts adjacent to one another.
Will be obsoleted in CARO v2 [https://github.com/obophenotype/caro/issues/3]
AAO:0010009
AEO:0000041
BILA:0000041
CARO:0000041
EHDAA2:0003041
FBbt:00007277
FMA:49443
HAO:0000041
TADS:0000605
TAO:0001478
TGMA:0001842
VHOG:0001737
XAO:0003160
ZFA:0001478
uberon
UBERON:0000477
anatomical cluster
Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation.
changed label and definition to reflect CARO2
AAO:0000607
AAO:0010054
AEO:0000043
BILA:0000043
BIRNLEX:19
CALOHA:TS-2090
CARO:0000043
EHDAA2:0003043
EMAPA:35868
FBbt:00007003
FMA:9637
HAO:0000043
MA:0003002
MESH:D014024
NCIT:C12801
TAO:0001477
TGMA:0001844
UMLS:C0040300
VHOG:0001757
WBbt:0005729
XAO:0003040
ZFA:0001477
galen:Tissue
portion of tissue
tissue portion
simple tissue
uberon
UBERON:0000479
tissue
Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types.
AAO:0010048
AEO:0000055
BILA:0000055
CARO:0000055
EHDAA2:0003055
FBbt:00007010
HAO:0000055
TAO:0001488
TGMA:0001847
VHOG:0001762
XAO:0003037
ZFA:0001488
uberon
multi-tissue structures
UBERON:0000481
multi-tissue structure
The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP].
requires review for applicability to invertebrate structures, e.g. synganglion
Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]
Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO]
The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO)
(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]
https://www.ncbi.nlm.nih.gov/pubmed/23622192
AAO:0010478
ABA:Brain
BAMS:Br
BAMS:Brain
BILA:0000135
BIRNLEX:796
BTO:0000142
CALOHA:TS-0095
DHBA:10155
EFO:0000302
EHDAA2:0000183
EHDAA:2641
EHDAA:6485
EMAPA:16894
EV:0100164
FBbt:00005095
FMA:50801
GAID:571
HBA:4005
MA:0000168
MAT:0000098
MBA:8
MBA:997
MESH:D001921
MIAA:0000098
NCIT:C12439
OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
PBA:3999
TAO:0000008
UMLS:C0006104
UMLS:C1269537
VHOG:0000157
XAO:0000010
ZFA:0000008
galen:Brain
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=21
uberon
encephalon
suprasegmental levels of nervous system
suprasegmental structures
synganglion
the brain
UBERON:0000955
brain
true
The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex.
We follow NIFSTD in defining cerebral cortex and including both neocortex and hippocampal formation (DG+hippocampus).
The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2-4 mm (0.08-0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted][Wikipedia:Cerebral_cortex].
Migration of neurons from the basal or striatal portions of the anterior part of the neural tube occurs to varying degrees in different vertebrate classes, but a true cerebral cortex is generally acknowledged to have made its first appearance in reptiles. The definition can be unambiguous, since 'cortex' simply implies the existence of a surface neuronal layer with an overlying 'zonal lamina' or 'molecular' layer containing dendrites and axons, which is separated from the underlying basal 'matrix' by white matter. Although reptilian cerebral cortex does indeed fulfill these conditions in certain locations, the separation from striatal structures is often indistinct, so that it may even be argued that some primitive dipnoans possess a pallium or cortex. Nevertheless, an extensive laminated layer separated by underlying white matter is well represented only in reptiles and mammals.[well established][VHOG]
hagfishes have independently evolved a highly laminated cerebral cortex, comparable in many ways to the cerebral cortex of mammals [http://icb.oxfordjournals.org/content/42/4/743]
https://www.ncbi.nlm.nih.gov/pubmed/5096551
BAMS:C
BAMS:CTX
BAMS:Cerebral_cortex
BAMS:Cx
BIRNLEX:1494
BM:Tel-Cx
BTO:0000233
CALOHA:TS-0091
DHBA:10159
EFO:0000328
EHDAA2:0000234
EHDAA:5464
EMAPA:17544
EV:0100166
FMA:61830
GAID:629
HBA:4008
MA:0000185
MAT:0000108
MBA:688
MESH:A08.186.211.730.885.213
MIAA:0000108
NCIT:C12443
PBA:128011354
UMLS:C0007776
VHOG:0000722
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=39
cortex of cerebral hemisphere
uberon
brain cortex
cortex cerebralis
cortex cerebri
cortical plate (CTXpl)
cortical plate (areas)
pallium of the brain
UBERON:0000956
cerebral cortex
http://www.case.edu/EpSO.owl#CerebralCortexRegion
true
Any thin layer or plate.
TODO - merge with cell layer?
laminar
laminar tissue
uberon
UBERON:0000957
lamina
The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum.
The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved
The part of the central nervous system lying between the medulla oblongata and the midbrain, ventral to the cerebellum. [TFD][VHOG]
During the embryonic development of birds and mammals, neuroblasts migrate from the cerebellum into the ventral part of the rhombencephalon and differentiate into pontine and other nuclei, which relay information from between the cerebrum and cerebellum, and a conspicuous band of transverse fibers. This region is known as the pons. A pons does not differentiate in reptiles and anamniotes (...).[well established][VHOG]
BAMS:PONS
BAMS:Pons
BIRNLEX:733
BM:Pons
BTO:0001101
CALOHA:TS-0813
DHBA:10661
EFO:0001394
EHDAA2:0004394
EMAPA:17563
EV:0100253
FMA:67943
GAID:578
HBA:9131
MA:0000204
MAT:0000115
MBA:771
MESH:D011149
MIAA:0000115
NCIT:C12511
UMLS:C0032639
UMLS:C1280999
VHOG:0001176
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=547
pons Varolii
pons of Varolius
uberon
pons cerebri
UBERON:0000988
pons
true
A group of axons linking two or more neuropils and having a common origin, termination[FBbt].
White matter structure of CNS that contains axons that arise predominantly in one central nervous system part and terminate in another. Tracts are generally named by their region or origin followed by their region of primary termination, e.g., mammillothalamic tract contains axons that arise from neurons in the mammillary bodies and terminate in the thalamus. (CUMBO)
BIRNLEX:1649
EV:0100304
FBbt:00005100
FMA:83847
NLX:147822
axonal tract
neuraxis tract
tract of neuraxis
nerve tract
uberon
nerve tract
tract
UBERON:0001018
WP says this is the analog of peripheral nerves in CNS.
axon tract
Axon tract that crosses the midline of the central nervous system[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt].
White matter fiber bundle that crosses the midline of the brain or spinal cord, that connects similar structures on both sides. (CUMBO; Heimer, L. The Human Brain, 2nd ed., 1995, pg 6)
commissural
commissure
FBbt:00005103
FMA:83906
NCIT:C32349
NLX:110
NLXANAT:20090513
OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw
TADS:0000201
UMLS:C1185742
commissure of neuraxis
neuraxis commissure
white matter commissure
uberon
UBERON:0001020
*not* the same as FMA:76741 Commissure
nervous system commissure
Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
AAO:0010841
AEO:0000000
BILA:0000000
BIRNLEX:6
CARO:0000000
EHDAA2:0002229
FBbt:10000000
FBbt_root:00000000
FMA:62955
HAO:0000000
MA:0000001
NCIT:C12219
TAO:0100000
TGMA:0001822
UMLS:C1515976
WBbt:0000100
XAO:0000000
ZFA:0100000
uberon
UBERON:0001062
anatomical entity
The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html
TODO - in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 parietal lobe
The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html
the area of the frontal lobe that is involved with integration of voluntary movements and with speech.[MP]
BAMS:M1
BAMS:MO
BAMS:MOp
BM:Tel-Cx-M1
BTO:0004348
DHBA:10162
EFO:0002472
EMAPA:35704
FMA:224854
MA:0000907
MBA:985
MESH:A08.186.211.730.885.213.270.548
NCIT:C97339
NLX:143555
UMLS:C0026607
motor cortex
uberon
Rolando's area
excitable area
gyrus precentralis
motor area
prefrontal gyrus
primary motor area
somatic motor areas
somatomotor areas
UBERON:0001384
primary motor cortex
true
Lower lateral part of the cerebral hemisphere. (MSH)
BAMS:TL
BAMS:Temporal_lobe
BIRNLEX:1160
BTO:0001355
CALOHA:TS-1020
DHBA:12139
EFO:0000917
EMAPA:18797
EV:0100169
FMA:61825
GAID:635
HBA:4132
MAT:0000508
MESH:A08.186.211.730.885.213.863
NCIT:C12353
OpenCyc:Mx4rwQLi-ZwpEbGdrcN5Y29ycA
UMLS:C0039485
UMLS:C1268978
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=125
lobus temporalis
temporal cortex
uberon
UBERON:0001871
Boundary notes: It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [Wikipedia:Temporal_lobe]
temporal lobe
true
Upper central part of the cerebral hemisphere. (MSH)
parietal region
BAMS:Parietal_lobe
BIRNLEX:1148
BTO:0001001
CALOHA:TS-0747
DHBA:12131
EFO:0000914
EV:0100168
FMA:61826
GAID:680
HBA:4084
MAT:0000506
MESH:A08.186.211.730.885.213.670
NCIT:C12354
OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA
UMLS:C0030560
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
regio parietalis
uberon
lobus parietalis
UBERON:0001872
parietal lobe
true
Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM).
Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA:61841]
One part of the striatum is called the archistriatum. (...) The archistriatum of fishes consists of several indistinctly segregated nuclei called the amygdaloid (...) complex. Tetrapods retain the structure, and in mammals the corresponding amygdala is a globular mass that tends to be ventral to the other basal nuclei.[well established][VHOG]
amygdalar
MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype
https://www.ncbi.nlm.nih.gov/pubmed/23671345
BAMS:AMY
BAMS:Amg
BAMS:Amy
BAMS:Amygdala
BAMS:Amygdaloid_complex
BIRNLEX:1241
BM:Tel-Am
BTO:0001042
CALOHA:TS-0037
DHBA:10361
EFO:0000252
EMAPA:32672
EMAPA:36051
EV:0100189
EV:0100190
FMA:61841
GAID:616
HBA:4327
MA:0000887
MAT:0000289
MESH:A08.186.211.577.090
MIAA:0000289
NCIT:C12440
OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA
PBA:4002
UMLS:C0002708
VHOG:0001277
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=237
amygdaloid body
amygdaloid complex
amygdaloid nuclear complex
amygdaloid nuclear groups
archistriatum
uberon
amygdaloid area
amygdaloid nuclear group
amygdaloid nucleus
corpus amygdalae
corpus amygdaloideum
nucleus amygdalae
UBERON:0001876
amygdala
http://www.case.edu/EpSO.owl#Amygdala
true
The most anterior region the brain including both the telencephalon and diencephalon.
Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO]
The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]
relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO]
In craniate embryos, neural expression of Distal-less-related genes is exclusively in the forebrain (...). Because the major neural expression domain of amphioxus AmphiDll is in the anterior three-fourths of the cerebral vesicle, we suggest that this region of the neural tube is homologous to parts of the craniate forebrain. This conclusion is strongly supported by three-dimensional, computer-assisted reconstruction of the neural tube of amphioxus based on serial transmission electron microscopy. At the neuroanatomical level, a number of detailed homologies are indicated between the anterior three-fourths of the amphioxus cerebral vesicle and the diencephalic region of the craniate forebrain. If one assumes that the amphioxus condition fairly represents the nervous system of the proximate ancestor of the craniates, one can suggest that they evolved from a creature that had the beginnings of a forebrain.[well established][VHOG]
prosencephalic
FB
AAO:0010147
BAMS:FB
BAMS:Forebrain
BIRNLEX:1509
BTO:0000478
CALOHA:TS-0380
DHBA:10156
DMBA:15566
EFO:0000909
EHDAA2:0000556
EHDAA:3470
EMAPA:16895
FMA:61992
MA:0000170
MAT:0000105
MESH:D016548
MIAA:0000105
NCIT:C40185
TAO:0000109
UMLS:C0085140
VHOG:0000383
XAO:0000011
ZFA:0000109
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=27
uberon
prosencephalon
UBERON:0001890
forebrain
http://www.case.edu/EpSO.owl#Forebrain
The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].
developmental relationships need revised
Middle part of the brain composed of the optic tectum and penducular region.[AAO]
The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995.[TAO]
Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]
mesencephalic
part of brainstem in ABA - we reject this in favor of ISBN:0471888893 which has an implicit overlaps relationships
MB
AAO:0010149
BAMS:MES
BIRNLEX:1667
BM:MB
BTO:0000138
CALOHA:TS-0630
DHBA:10648
DMBA:16649
EFO:0000919
EHDAA2:0001162
EHDAA:3694
EMAPA:16974
EV:0100242
FMA:61993
HBA:9001
MA:0000207
MAT:0000106
MBA:313
MESH:D008636
MIAA:0000106
NCIT:C12510
OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA
RETIRED_EHDAA2:0001104
TAO:0000128
UMLS:C0025462
VHOG:0000069
XAO:0000014
ZFA:0000128
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=462
uberon
mesencephalon
UBERON:0001891
midbrain
true
Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres.
Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA:62000].
Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres.[AAO]
The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995.[TAO]
relationship loss: develops_from presumptive telencephalon (TAO:0000571)[TAO]
From an evolutionary standpoint, the telencephalon is the most recent brain structure: the amphioxus does not have this structure as a morphological entity. Overt telencephalon is present in the hagfish and lamprey to receive numerous input fibers from various parts of the CNS, similar to gnathostomes.[well established][VHOG]
cerebral
telenencephalic
In mammals the cortex covers almost the whole of the cerebral hemispheres.
In ray-finned fishes and most pronounced in teleosts the roof plate of the embryonic telencephalon extends laterally with the effect that the paired alar plates forming the hemispheric walls roll out lateroventrally in a process called eversion. This is unlike the development in other vertebrate groups. [ZFA:0000079, ISBN:3764351209]
In ray-finned fishes the inner surfaces of the lateral and ventral regions of the cerebrum bulge up into the ventricles.
In the amniotes, the cerebrum becomes increasingly large and complex. In reptiles, the paleopallium is much larger than in amphibians, and its growth has pushed the basal nuclei into the central regions of the cerebrum.
In the most primitive living vertebrates, the hagfishes and lampreys, the cerebrum is a relatively simple structure receiving nerve impulses from the olfactory bulb.
The cerebrum of birds has evolved along different lines to that of mammals, although they are similarly enlarged, by comparison with reptiles. However, this enlargement is largely due to the basal ganglia, with the other areas remaining relatively primitive in structure.
dolphins are the only species (other than humans) to have cerebra accounting for as much as 2 percent of their body weight.
supratentorial region
AAO:0010479
BAMS:CB
BAMS:CH
BAMS:IV
BAMS:Tel
BIRNLEX:1115
BM:Tel
BTO:0000239
CALOHA:TS-1018
DHBA:10158
EFO:0000912
EHDAA2:0001982
EMAPA:16910
EV:0100165
FMA:62000
GAID:621
HBA:4007
MA:0000183
MAT:0000421
MBA:567
MESH:D013687
MIAA:0000421
PBA:128011350
TAO:0000079
UMLS:C0039452
VHOG:0000283
XAO:0000012
ZFA:0000079
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=31
cerebrum
endbrain
uberon
UBERON:0001893
telencephalon
true
The division of the forebrain that develops from the foremost primary cerebral vesicle.
The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]
Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]
Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]
diencephalic
in ABA, this is part of the brain stem
DiE
AAO:0010481
BAMS:DI
BAMS:Di
BAMS:DiE
BAMS:IB
BAMS:Zh.
BIRNLEX:1503
BM:Die
BTO:0000342
CALOHA:TS-0199
DHBA:10389
DMBA:16308
EFO:0000911
EHDAA2:0000385
EHDAA:1969
EHDAA:2645
EHDAA:3472
EMAPA:16896
EV:0100194
FMA:62001
GAID:618
HBA:4391
MA:0000171
MAT:0000420
MBA:1129
MESH:A08.186.211.730.385
MIAA:0000420
NCIT:C12456
OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA
PBA:128013010
TAO:0000101
UMLS:C0012144
VHOG:0000318
XAO:0000013
ZFA:0000101
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=288
between brain
interbrain
mature diencephalon
thalamencephalon
uberon
betweenbrain
diencephalon
UBERON:0001894
diencephalon
http://www.case.edu/EpSO.owl#Diencephalon
true
Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO].
Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]
The posterior region of the brain that is continuous with the spinal cord. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-17, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]
Classical anatomical studies subdivided the vertebrate rhombencephalon into pons and medulla oblongata. (...) The medulla oblongata appears therefore as a tagma, that is, a group of segmental units (pseudorhombomeres, in this case) sharing some morphological and molecular characteristics, and in some aspects different from the segmental units present in adjoining brain regions, pons and spinal cord.[well established][VHOG]
bulb
medulla
AAO:0010486
BAMS:MY
BAMS:Md
BIRNLEX:957
BM:Me
BTO:0000041
CALOHA:TS-0607
DMBA:17352
EFO:0000924
EHDAA2:0001088
EHDAA:7588
EMAPA:17550
EV:0100275
FMA:62004
GAID:590
MA:0000206
MAT:0000111
MAT:0000367
MBA:354
MESH:D008526
MIAA:0000111
NCIT:C12442
OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA
OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA
TAO:0000545
UMLS:C0025148
UMLS:C1269575
VHOG:0000181
XAO:0003100
ZFA:0000545
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=698
bulbus
uberon
medulla oblonzata
metepencephalon
UBERON:0001896
medulla oblongata
true
Subcortical brain region consisting of paired gray matter bodies in the dorsal diencephalon and forming part of the lateral wall of the third ventricle of the brain. The thalamus represents the major portion of the diencephalon and is commonly divided into cellular aggregates known as nuclear groups.(MeSH). The dorsal topographic division of the interbrain. The macrodissected adult human thalamus was clearly illustrated by Vesalius in 1543 and the term as defined here was introduced by His in 1893. It includes the traditional epithalamus, dorsal thalamus, and ventral thalamus of Herrick (1910, pp. 494, 498). Also see Kuhlenbeck (1927, Ch. 9) and Jones (1985, p. 87).
One of a pair of large oval nervous structures made of gray matter and forming most of the lateral walls of the third ventricle of the brain and part of the diencephalon. [TFD][VHOG]
Part of the diencephalon consisting of a mass of connecting fibers which relay sensory information to the cerebral cortex.[AAO]
(...) the brain regions of tetrapods, the structures they contain, and their basic organizational features are the same as in fishes.[well established][VHOG]
thalamic
Th
thalamus
AAO:0010483
BAMS:TH
BAMS:Th
BIRNLEX:954
BTO:0001365
CALOHA:TS-1031
DHBA:10390
DMBA:16376
EFO:0000910
EMAPA:17540
EV:0100195
GAID:656
HBA:4392
MA:0000179
MAT:0000109
MBA:549
MESH:A08.186.211.730.385.826
MIAA:0000109
NCIT:C12459
OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA
PBA:128013014
TAO:0001215
UMLS:C0039729
VHOG:0000657
ZFA:0001215
galen:Thalamus
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=300
wider thalamus
uberon
thalamencephalon
thalami
thalamus opticus
UBERON:0001897
dorsal plus ventral thalamus
http://www.case.edu/EpSO.owl#ThalamusSegment
A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia].
A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995.[TAO]
Part of the diencephalon ventral to the thalamus consisting of connecting fibers and is a center for control of the autonomous nervous system.[AAO]
For instance, the vertebrate ventral diencephalon generates the hypothalamus which functions as a major endocrine center in cooperation with the hypophysis, the anterior part of the pituitary gland, located just ventral to the hypothalamus. In the amphioxus brain, the presence of a hypothalamus-like structure has been reported associated with the ventrally located Hatschek's pit, the hypothetical hypophysial homologue. It is thus conceivable that a hypothalamus-like structure originally involved in endocrine functions may have already been present before the establishment of vertebrates.[well established][VHOG]
hypothalamic
all vertebrates contain a hypothalamus
Hy
AAO:0010484
BAMS:HY
BAMS:Hy
BIRNLEX:734
BM:Die-Hy
BTO:0000614
CALOHA:TS-0469
DHBA:10467
EFO:0000107
EHDAA2:0000802
EHDAA:5446
EMAPA:17536
EV:0100225
FMA:62008
GAID:460
HBA:4540
MA:0000173
MAT:0000112
MBA:1097
MESH:A08.186.211.577.482
MIAA:0000112
NCIT:C12458
OpenCyc:Mx4rwEgr9JwpEbGdrcN5Y29ycA
TAO:0000032
UMLS:C0020663
VHOG:0000179
XAO:0004070
ZFA:0000032
galen:Hypothalamus
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=292
preoptico-hypothalamic area
preoptico-hypothalamic region
uberon
hypothalamus
UBERON:0001898
hypothalamus
http://www.case.edu/EpSO.owl#HypothalamusZone
true
Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM).
The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO]
The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]
The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]
The term SC is used when discussing mammals, and OT for other vertebrates[WP]
https://www.ncbi.nlm.nih.gov/pubmed/3987648
AAO:0010609
BAMS:SC
BIRNLEX:1040
BM:MB-Tec-SC
BTO:0000965
DHBA:12292
DMBA:16678
EFO:0002474
EMAPA:32869
EV:0100245
FMA:62403
GAID:576
HBA:9114
MA:0001068
MESH:A08.186.211.132.659.237.816
TAO:0000445
UMLS:C0228405
XAO:0003226
ZFA:0000445
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=473
anterior colliculus
anterior corpus quadrigeminum
cranial colliculus
optic tectum
uberon
colliculus bigeminalis oralis
colliculus cranialis
colliculus rostralis
colliculus superior
corpora bigemina
corpus quadrigeminum superius
dorsal midbrain
layers of the superior colliculus
lobus opticus
nates
optic lobe
optic tectum
strata (grisea et alba) colliculi cranialis
strata (grisea et alba) colliculi superioris
tectal lobe
tectum
tectum opticum
UBERON:0001945
). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex.
superior colliculus
true
Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM).
https://www.ncbi.nlm.nih.gov/pubmed/3987648
BAMS:IC
BIRNLEX:806
DHBA:12305
DMBA:16692
EFO:0002465
EMAPA:32870
EV:0100246
FMA:62404
GAID:575
HBA:9102
MA:0001067
MBA:4
MESH:A08.186.211.132.659.237.364
UMLS:C0228411
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=476
caudal colliculus
inferior colliculi
posterior colliculus
posterior corpus quadrigeminum
uberon
colliculus caudalis
colliculus inferior
corpus bigeminalis caudalis
corpus bigeminum posterioris
corpus quadrigeminum inferius
UBERON:0001946
inferior colliculus
true
A nervous system structure composed primarily of nerve cell bodies (somas). May also include dendrites and the initial unmyelinated portion of axons.
Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]
AEO:0001012
EHDAA2:0003136
EHDAA2_RETIRED:0004658
EMAPA:37596
FMA:67242
HBA:4006
MA:0001112
NCIT:C32695
OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA
TAO:0002197
UMLS:C0018220
VHOG:0001768
ZFA:0001681
gray matter
gray matter of neuraxis
grey matter
grey matter of neuraxis
grey substance
neuronal grey matter
substantia grisea
uberon
gray mater
grisea
UBERON:0002020
gray matter
Posterior part of the cerebral hemisphere (MSH)
BAMS:OL
BAMS:Occipital_lobe
BIRNLEX:1136
BTO:0000293
CALOHA:TS-0693
DHBA:12148
EFO:0000915
EV:0100170
FMA:67325
GAID:678
HBA:4180
MAT:0000507
MESH:A08.186.211.730.885.213.571
NCIT:C12355
OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA
UMLS:C0028785
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=140
regio occipitalis
uberon
lobus occipitalis
UBERON:0002021
occipital lobe
true
The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA].
Posterior part of the brain consisting of the cerebellum and medulla oblongata.[AAO]
The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995.[TAO]
relationship loss: develops_from hindbrain neural tube (TAO:0007043)[TAO]
Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]
rhombencephalic
in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps
https://www.ncbi.nlm.nih.gov/pubmed/23810707
AAO:0010150
BAMS:HB
BIRNLEX:942
BTO:0000672
CALOHA:TS-0457
DHBA:10653
DMBA:16808
EFO:0000923
EHDAA2:0000746
EHDAA:3514
EHDAA:6487
EMAPA:16916
FMA:67687
MA:0000195
MAT:0000107
MBA:1065
MESH:D012249
MIAA:0000107
NCIT:C40336
TAO:0000029
UMLS:C0035507
UMLS:C1522180
VHOG:0000070
XAO:0000015
ZFA:0000029
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=540
uberon
rhombencephalon
UBERON:0002028
hindbrain
true
Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA].
Dorsal part of the hindbrain that coordinates muscle movement, posture, and balance.[AAO]
Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995.[TAO]
However, although the lamprey possesses a region comparable to the cerebellum and display expression of LjFgf8/17 at the MHB (midbrain hindbrain boundary), it does not have Purkinje cells and cerebellar nuclei, as well as components of the rhombic lip-derived cerebellar and pre-cerebellar systems. It is noteworthy that the latter structures require specific expression of Pax6 in the rhombic lip of the gnathostome hindbrain. Interestingly, the lamprey rhombic lip does not express Pax6. Thus, it is tempting to speculate that in vertebrate evolution the rostral hindbrain is incapable of differentiating into the cerebellum before the co-option of Pax6 in that region. In other words, cerebellum has been brought about as an evolutionary innovation in gnathostomes, based on exaptation of MHB, rhombic lip, and some regulatory gene expression already present in the vertebrate common ancestor.[well established][VHOG]
cerebellar
The absence of a cerebellum in hagfishes and lampreys appears to be the only exception [to the rule that vertebrates possess the same number of brain divisions]. Both hagfishes and lampreys do possess a thin band of cells located medial to the lateral line centers of the medulla (Ronan and Northcutt, 1998), which has been interpreted as a primitive cerebellum (Larsell, 1967), but more recent experimental studies (Kishida et al., 1987; Weigle and Northcutt, 1998) fail to support Larsell's claim[http://icb.oxfordjournals.org/content/42/4/743.full]
almost all AOs agree that the cerebellum is part of the hindbrain (sometimes specifically part of the metencephalon, which, when present, is part of the hindbrain). However, ABA has cerebellum and brain stem as partof siblings, with the hindbrain part of the brainstem
infratentorial region
AAO:0010485
BAMS:CB
BAMS:Cb
BIRNLEX:1489
BM:CB
BTO:0000232
CALOHA:TS-0125
DHBA:10656
EFO:0000327
EHDAA2:0000232
EMAPA:17787
EV:0100293
FMA:67944
GAID:595
HBA:4696
MA:0000198
MAT:0000110
MBA:512
MESH:D002531
MIAA:0000110
NCIT:C12445
OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA
TAO:0000100
UMLS:C0007765
UMLS:C1268981
VHOG:0000024
XAO:0003098
ZFA:0000100
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=643
epencephalon-1
uberon
corpus cerebelli
parencephalon
UBERON:0002037
cerebellum
true
A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO].
Part of the rostral part of the cerebrum where axons of olfactory cells from the nasal mucosa terminate. Projects onto olfactory parts of pallium via olfactory tracts
Part of the telencephalon comprised of anterior outgrowths of either of the cerebral hemispheres in which the olfactory nerve exits.[AAO]
Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract[FMA:77624].
The part of the forebrain in which the olfactory nerves end and the olfactory tracts originate. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]
The presence of paired evaginated hemispheres and olfactory bulbs in both agnathan and gnathostome radiations suggests that such hemispheres were also present in the common ancestor.[well established][VHOG]
In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb
Note that in uberon 'main olfactory bulb' is a separate class, but some ontologies may treat this as partially synonymous. The distinction may only make sense in tetrapods with a vomeronasal organ (olfactory nerves terminate in OB in fishes and in main OB in tetrapods - Butler and Hodos)
the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP).
https://www.ncbi.nlm.nih.gov/pubmed/26368332
AAO:0010165
BAMS:DLB
BAMS:OB
BAMS:Olf
BIRNLEX:1137
BM:Tel-OB
BTO:0000961
CALOHA:TS-0702
DHBA:10307
EHDAA2:0004705
EMAPA:32809
EV:0100173
FMA:77624
GAID:633
HBA:9303
MA:0000194
MESH:A08.186.211.577.699.573
NCIT:C28401
TAO:0000402
UMLS:C0028936
VHOG:0000033
XAO:0004180
ZFA:0000402
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279
bulbus olfactorius
uberon
bulbus olfactorius
bulbus olfactorius (Morgagni)
olfactory lobe
olfactory lobe (Barr & Kiernan)
UBERON:0002264
olfactory bulb
true
Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone)
consider adding class for secondary vesicle precursor
Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]
relationship loss: develops_from forebrain ventricle (TAO:0001259)[TAO]
The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]
https://www.ncbi.nlm.nih.gov/pubmed/22091816
BAMS:3V
BAMS:V3
BIRNLEX:714
BM:Die-3V
CALOHA:TS-2058
DHBA:10602
EHDAA2:0000084
EMAPA:16900
EV:0100308
FMA:78454
GAID:614
HBA:9420
MA:0000182
MBA:129
MESH:D020542
NCIT:C12827
OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA
TAO:0000161
UMLS:C0149555
VHOG:0000007
ZFA:0000161
3rd ventricle
ventriculus diencephali
diencephalic vesicle
uberon
diencephalic ventricle
ventriculus tertius cerebri
UBERON:0002286
third ventricle
true
Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized].
Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]
Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted][ZFA:0001707].
the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord[MP]
BAMS:BS
BIRNLEX:1565
BTO:0000146
CALOHA:TS-0093
EFO:0001962
EMAPA:32678
EV:0100241
FMA:79876
MA:0000169
MBA:343
MESH:D001933
NCIT:C12441
TAO:0002156
UMLS:C0006121
VHOG:0001457
ZFA:0001707
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236
brain stem
truncus encephali
uberon
accessory medullary lamina of pallidum
lamella pallidi incompleta
lamina medullaris accessoria
lamina medullaris incompleta pallidi
lamina pallidi incompleta
truncus encephalicus
UBERON:0002298
'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).
brainstem
true
A neural nucleus that is part of the brain.
EMAPA:35185
FMA:83840
MA:0000811
NCIT:C49346
UMLS:C1706993
ZFA:0005575
brain nucleus
uberon
brain nuclei
UBERON:0002308
nucleus of brain
Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM).
The tectum - a multisensory, topologically mapped structure in the roof of the midbrain presents a remarkable degree of conservation in all vertebrate radiations; although it varies in the extent of its development in different vertebrate classes, there is considerable evidence now to deem its layered structure, its cell types, and its hodological pattern as homologous in all vertebrates.[well established][VHOG]
In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi
https://www.ncbi.nlm.nih.gov/pubmed/3987648
BAMS:MTec
BAMS:Tec
BIRNLEX:1032
BM:MB-Tec
BTO:0001793
DHBA:12291
EFO:0000920
EHDAA2:0004474
EMAPA:19051
FMA:83902
HBA:9101
MA:0000211
MAT:0000451
NCIT:C12460
TAO:0001353
UMLS:C0039433
VHOG:0001388
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=465
mesencephalic tectum
neuraxis tectum
tectum
tectum mesencephali
uberon
t. mesencephali
tectum mesencephalicum
tectum of midbrain
UBERON:0002314
midbrain tectum
true
Neural tissue consisting of myelinated axons connecting grey matter areas of the central nervous system.
Cell part cluster consisting predominantly of neurites in the brain and the spinal cord[FMA:83929].
Multi-tissue structure comprised largely of myelinated axons.[TAO]
The myelination of axons by glial cells was the last major step in the evolution of cells in the vertebrate nervous system, and white-matter tracts are key to the architecture of the mammalian brain.[well established][VHOG]
nlx_anat_101177 seems to have been lost in the transition from NIFGA to Neurolex
AEO:0000139
AEO:0001011
EMAPA:35927
FMA:83929
HBA:9218
MA:0001135
NCIT:C33892
NLX:412
NLXANAT:101177
OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA
PBA:294022044
TAO:0000145
TAO:0002142
TAO:0002143
UMLS:C0682708
VHOG:0001764
ZFA:0001682
CNS tract/commissure
neuronal white matter
white matter of neuraxis
white substance
uberon
CNS tracts and commissures
CNS white matter
substantia alba
white mater
UBERON:0002316
white matter
White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM)
The largest commissure of the brain connecting the cerebral hemispheres. [TFD][VHOG]
In addition to the anterior commissure, placental mammals have a phylogenetically new forebrain commissure, the corpus callosum, which primarily interconnects the neocortex of the cerebral hemispheres.[well established][VHOG]
The corpus callosum is found only in placental mammals. other groups do have other brain structures that allow for communication between the two hemispheres, such as the anterior commissure, which serves as the primary mode of interhemispheric communication in marsupials.
https://www.ncbi.nlm.nih.gov/pubmed/28912749
BAMS:CC
BAMS:cc
BIRNLEX:1087
BM:Tel-CC
BTO:0000615
CALOHA:TS-0180
DHBA:10561
EFO:0001390
EMAPA:35253
EV:0100305
FMA:86464
GAID:683
HBA:9222
MA:0000188
MAT:0000286
MBA:776
MESH:A08.186.211.730.885.362
MIAA:0000286
NCIT:C12446
OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA
UMLS:C0010090
VHOG:0001608
uberon
UBERON:0002336
corpus callosum
https://www.epilepsy.com/learn/professionals/diagnosis-treatment/surgery/corpus-callosotomy
https://www.webmd.com/epilepsy/guide/corpus-callosotomy#1
true
true
true
An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified].
it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the set of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done.
https://www.ncbi.nlm.nih.gov/pubmed/23671345
BTO:0000235
CALOHA:TS-1149
DHBA:10332
EFO:0000904
FMA:62514
basal ganglion of telencephalon
uberon
basal ganglia
basal nucleus
nuclei basales
UBERON:0002420
basal ganglion
http://www.case.edu/EpSO.owl#TelencephalonBasalGanglion
true
Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures.
Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]
Irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space.[AAO]
The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO][GO:0021592].
The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]
https://www.ncbi.nlm.nih.gov/pubmed/22091816
AAO:0011043
BAMS:4V
BAMS:V4
BIRNLEX:1256
BM:Pons-4V
BTO:0003426
CALOHA:TS-2015
DHBA:10669
DHBA:12805
DMBA:126651782
EHDAA2:0000100
EHDAA:896
EMAPA:16917
EV:0100310
FMA:78469
GAID:610
HBA:9421
MA:0000196
MBA:145
MESH:D020546
NCIT:C12828
OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA
TAO:0000110
UMLS:C0149556
VHOG:0000006
XAO:0003099
ZFA:0000110
ventricle IV
rhombencephalic vesicle
uberon
4th ventricle
IVth ventricle
fourth ventricle proper
hindbrain ventricle
rhombencephalic ventricle
ventricle of hindbrain
ventricle of rhombencephalon
ventriculus quartus
UBERON:0002422
fourth ventricle
true
A subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo].
We explicitly merge two FMA classes here, as BA17 is equivalent to V1. In future these may be separated into functional and cytoarchitecturally defined regions with an overlaps relationship between them
B09-17
BAMS:17
BAMS:V1
BAMS:VISp
BIRNLEX:1748
BM:Tel-Cx-V1
BTO:0004703
EMAPA:35708
FMA:236871
FMA:68614
MA:0000914
MBA:385
NCIT:C97340
NLX:143552
PBA:10026
UMLS:C0038446
UMLS:C1272535
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=702
BA17
Brodmann (1909) area 17
Brodmann area 17
Brodmann area 17, striate
area 17 of Brodmann-1909
b09-17
striate cortex
uberon
BA17
Brodmann area 17
V1
area 17 of Brodmann
area striata
calcarine cortex
nerve X
occipital visual neocortex
primary visual area
striate area
visual area V1
visual area one
visual association area
visual association cortex
UBERON:0002436
primary visual cortex
true
A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum.
EMAPA:35435
FMA:67930
MA:0002721
uberon
commissure of cerebrum
inter-hemispheric commissure
interhemispheric commissure
UBERON:0002473
intercerebral commissure
The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted].
SFRS
https://www.ncbi.nlm.nih.gov/pubmed/31920906
BAMS:sfrs
BAMS:sfs
BIRNLEX:1030
DHBA:10639
FMA:83755
HBA:9356
NCIT:C33676
UMLS:C0228198
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=61
sulcus f1
sulcus frontalis primus
sulcus frontalis superior
superior frontal fissure
uberon
sulcus frontalis superior
UBERON:0002562
superior frontal sulcus
true
true
Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine).
BAMS:PoG
BIRNLEX:1070
BTO:0004354
DHBA:12132
EFO:0001383
FMA:61896
HBA:4085
NCIT:C33346
UMLS:C0152302
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=105
gyrus postcentralis
postcentral convolution
posterior central gyrus
postrolandic gyrus
uberon
gyrus centralis posterior
post central gyrus
somatosensory cortex
UBERON:0002581
postcentral gyrus
true
The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted].
CCS
https://www.ncbi.nlm.nih.gov/pubmed/26063964
BIRNLEX:1086
BM:Tel-Cx-CAS
DHBA:10612
FMA:83749
HBA:9391
NCIT:C32252
UMLS:C0228224
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=44
calcarine fissure
sulcus calcarinus
uberon
fissura calcarina
UBERON:0002586
calcarine sulcus
true
true
Anatomical divisons of the brain according to one or more criteria, e.g. cytoarchitectural, gross anatomy. Parts may be contiguous in 3D or not, e.g., basal ganglia.
BIRNLEX:1167
FMA:55676
NCIT:C13031
UMLS:C0445620
anatomical structure of brain
biological structure of brain
brain anatomical structure
brain biological structure
brain part
neuraxis segment
neuroanatomical region
segment of brain
uberon
UBERON:0002616
regional part of brain
Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the "inflated" surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine).
BAMS:SFG
BIRNLEX:1303
BTO:0004836
DHBA:12115
EFO:0001991
FMA:61857
HBA:4021
NCIT:C33674
UMLS:C0152296
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=83
marginal gyrus
superior frontal convolution
uberon
gyrus F1
gyrus frontalis primus
gyrus frontalis superior
UBERON:0002661
superior frontal gyrus
true
Part of inferior parietal lobule formed by the cortex surrounding the upturned end of the superior temporal sulcus (Nolte, The Human Brain, 6th ed, 2009, pg 659)
BAMS:AnG
BIRNLEX:1376
DHBA:12136
FMA:61898
HBA:4111
NCIT:C32077
UMLS:C0152305
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=109
middle part of inferior parietal lobule
preoccipital gyrus
uberon
gyrus angularis
gyrus parietalis inferior
prelunate gyrus
UBERON:0002686
angular gyrus
true
Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine).
BAMS:SMG
BIRNLEX:1381
DHBA:12135
FMA:61897
HBA:4104
NCIT:C33706
UMLS:C0228214
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=108
anterior part of inferior parietal lobule
inferior parietal lobule (krieg)
uberon
BA40
Brodmann area 40
gyrus supramarginalis
UBERON:0002688
supramarginal gyrus
true
Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted].
two classes in ncit (in general ncit distinguishes between fissue and sulcus, whereas FMA treats these as exact synonyms)
POS
https://www.ncbi.nlm.nih.gov/pubmed/26063964
BAMS:pocs
BAMS:pos
BIRNLEX:1428
BM:Tel-Cx-POS
DHBA:10626
FMA:83754
HBA:9392
NCIT:C33275
OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA
UMLS:C0228191
UMLS:C1744592
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=52
ncithesaurus:Parieto-occipital_Sulcus
fissura parieto-occipitalis
parieto-occipital fissure
parieto-occipital incisure
parietooccipital sulcus
sulcus parieto-occipitalis
sulcus parieto-occipitalis medialis
sulcus parietoccipitalis
sulcus parietooccipitalis
uberon
fissura parietooccipitalis
posterior orbital sulcus
sulcus parietooccipitalis
UBERON:0002695
parieto-occipital sulcus
true
true
Component of the frontal lobe, lateral aspect (Christine Fennema-Notestine).
BAMS:MFG
BIRNLEX:1451
BTO:0004834
DHBA:12116
FMA:61859
HBA:4028
NCIT:C33118
UMLS:C0152297
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=84
ncithesaurus:Middle_Frontal_Gyrus
gyrus frontalis medialis
intermediate frontal gyrus
medial frontal gyrus
uberon
gyrus F2
gyrus frontalis medialis (Winters)
gyrus frontalis medius
gyrus frontalis secundus
medial frontal gyrus (Mai)
middle (medial) frontal gyrus
UBERON:0002702
middle frontal gyrus
true
The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted].
CGS
BAMS:cgs
BAMS:cms
BIRNLEX:1468
BM:Tel-Cx-CGS
DHBA:10615
FMA:83748
HBA:9364
UMLS:C0228189
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=43
calloso-marginal sulcus
callosomarginal fissure
callosomarginal sulcus
cingulate fissure
sulcus callosomarginalis
sulcus cingulatus
sulcus cinguli
uberon
sulcus cinguli
UBERON:0002710
cingulate sulcus
true
A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified].
LS
BAMS:lf
BAMS:ls
BIRNLEX:1487
BM:Tel-Cx-LS
DHBA:10621
DHBA:12110
FMA:77801
HBA:9402
NCIT:C32615
UMLS:C0228187
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=49
Sylvian fissure
Sylvian sulcus
fissura lateralis
fissura lateralis cerebri
fissura lateralis cerebri (sylvii)
fissura transversa cerebri
fissure of Sylvius
lateral cerebral fissure
lateral cerebral sulcus
lateral fissure
lateral fissure of Sylvius
sulcus lateralis
sulcus lateralis cerebri
transverse cerebral fissure
uberon
sulcus cerebri lateralis (Sylvii)
UBERON:0002721
lateral sulcus
true
Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK).
TODO - check area vs complex. MBA:909 this is part of the hippocampal formation via retrohippocampal region
In primates it is found on the medial surface of the temporal lobe, partially bounded ventrolaterally by the collateral sulcus in the human and by the rhinal sulcus in the macaque. It is subdivided on the basis of internal structure into eight parts in the human ( Insausti-2004 ),and seven parts in the macaque ( Paxinos-2009a ). In the rat and mouse it is divided into a lateral part of the entorhinal area and a medial part of the entorhinal area; the latter is further divided into dorsal and ventral zones to produce three subdivisions in the rodent ( Swanson-2004 )
https://www.ncbi.nlm.nih.gov/pubmed/15857433
BAMS:ENT
BAMS:Ent
BIRNLEX:1508
BM:Tel-Cx-ENT
BTO:0002650
DHBA:10317
DMBA:16102
EFO:0001920
EMAPA:35313
FMA:72356
GAID:636
MA:0003117
MBA:909
MESH:A08.186.211.577.710.225
NCIT:C97338
PBA:294022158
UMLS:C0175196
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=168
entorhinal area
uberon
Brodmann's area 28
area entorhinalis (28,34)
area entorhinalis ventralis et dorsalis
cortex entorhinalis
entorhinal cortex
UBERON:0002728
entorhinal cortex
true
Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the inferior temporal sulcus whereas the caudal boundary is designated as the temporo-occipital incisure on the cortical surface. The occipitotemporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine).
BAMS:ITG
BIRNLEX:1577
BM:Tel-ITG
DHBA:12142
FMA:61907
HBA:4147
NCIT:C32791
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=138
ncithesaurus:Inferior_Temporal_Gyrus
gyrus temporalis inferior
lateral occipitotemporal gyrus (heimer-83)
uberon
IT cortex
gyrus temporalis inferior
inferotemporal cortex
UBERON:0002751
inferior temporal gyrus
true
Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the ssuperior temporal sulcus. The caudal boundary is the cauday portion of the superior temporal gyrus (posterior to becoming continuous with the supramarginal gyrus). The medial boundary is the lateral fissure (and when present the supramarginal gyrus), and the lateral boundary is the superior temporal suclus (Christine Fennema-Notestine).
BAMS:STG
BIRNLEX:1648
BM:Tel-STG
DHBA:12140
EFO:0001944
FMA:61905
HBA:4133
NCIT:C33698
UMLS:C0152309
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=136
ncithesaurus:Superior_Temporal_Gyrus
gyrus temporalis superior
uberon
gyrus temporalis superior
UBERON:0002769
superior temporal gyrus
true
Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine).
BAMS:MTG
BIRNLEX:1653
DHBA:12141
EFO:0002466
FMA:61906
HBA:4140
NCIT:C33125
UMLS:C0152310
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=137
ncithesaurus:Middle_Temporal_Gyrus
gyrus temporalis medius
intermediate temporal gyrus
uberon
inferior temporal gyrus (Seltzer)
medial temporal gyrus
middle (medial) temporal gyrus
UBERON:0002771
middle temporal gyrus
true
The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted].
PAO
https://www.ncbi.nlm.nih.gov/pubmed/30269938
BAMS:PaOp
BAMS:pao
BIRNLEX:4029
DHBA:13230
FMA:74889
UMLS:C0228265
UMLS:C1284612
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=96
operculum parietale
uberon
UBERON:0002911
parietal operculum
true
The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted].
MS
BIRNLEX:4030
FMA:83773
UMLS:C0259792
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=98
marginal branch of cingulate sulcus
marginal ramus of cingulate sulcus
ramus marginalis sulci cingulati
ramus marginalis sulci cinguli
sulcus marginalis
uberon
pars marginalis sulci cinguli
ramus marginalis; sulcus marginalis
UBERON:0002912
marginal sulcus
true
The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted].
ITPS
BAMS:ips
BAMS:itps
BIRNLEX:4031
BM:Tel-Cx-IPS
BTO:0003787
DHBA:10620
FMA:83772
HBA:9372
NCIT:C32879
UMLS:C0228213
UMLS:C1281069
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=97
interparietal fissure
intraparietal fissure
sulcus interparietalis
uberon
Turner sulcus
intraparietal sulcus of Turner
sulcus intraparietalis
UBERON:0002913
intraparietal sulcus
https://link.springer.com/article/10.1186/s42494-019-0005-7
true
true
The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted].
POCS
BAMS:pocs
BIRNLEX:4033
BM:Tel-Cx-PoCS
DHBA:10627
FMA:83774
HBA:9371
NCIT:C33347
UMLS:C0228212
UMLS:C1281070
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=99
postcentral fissure of cerebral hemisphere
postcentral fissure-1
postcentral sulcus
structure of postcentral sulcus
sulcus postcentralis
uberon
sulcus postcentralis
UBERON:0002915
postcentral sulcus of parietal lobe
true
Portion of frontal lobe that overlaps the insular cortex (adapted from Wikipedia)
BAMS:FOp
BAMS:fro
BIRNLEX:751
DHBA:12127
FMA:74886
HBA:4078
UMLS:C0149547
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2205
uberon
nucleus ventralis oralis, pars medialis (Dewulf)
opercular region
operculum frontale
UBERON:0002947
frontal operculum
http://www.case.edu/EpSO.owl#FrontalOperculum
true
The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted].
https://www.ncbi.nlm.nih.gov/pubmed/21403025
https://www.ncbi.nlm.nih.gov/pubmed/30100562
BIRNLEX:934
BM:Tel-Cx-Cg
BTO:0003975
DHBA:10277
DMBA:16072
EFO:0000343
EMAPA:35242
MA:0000904
NCIT:C52713
UMLS:C0598179
cingulate neocortex
uberon
gyrus cingulatus
gyrus cinguli
UBERON:0003027
cingulate cortex
http://www.case.edu/EpSO.owl#CingulateSegment
true
A gray matter that is part of a brain [Automatically generated definition].
EMAPA:35184
MA:0000810
NCIT:C49333
UMLS:C1707348
brain grey matter
brain grey substance
gray matter of brain
grey matter of brain
grey substance of brain
uberon
UBERON:0003528
brain gray matter
a part or parts of the hippocampus that have a particular function
do not include ABA:HIP
BAMS:HIP
BAMS:Hi/CA
EMAPA:32772
FMA:74041
MA:0002428
hippocampus subdivision
subdivision of hippocampus
uberon
hippocampal region
hippocampus region
UBERON:0003876
hippocampal field
The brain ventricles or their associated choroid plexuses
TODO - check relationship between CP and BV. If this is part of then this class should be obsoleted
TODO merge into BV
uberon
UBERON:0003947
brain ventricle/choroid plexus
The paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles
it is not clear if the FMA class refers to CNS or heart ventricles
BAMS:IVF
BAMS:ivf
DHBA:10608
EMAPA:36067
FMA:75351
MBA:124
NCIT:C32627
UMLS:C0016520
foramen Monroi
foramen interventriculare
interventricular foramen
interventricular foramina
uberon
UBERON:0003993
interventricular foramen of CNS
true
one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid
Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct[BIRNLEX:1356].
FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The latter is a cavity, and part of the former, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies.
BIRNLEX:1356
BTO:0001442
EFO:0001914
EMAPA:32674
FMA:78447
HBA:9418
MA:0000818
MESH:D002552
NCIT:C12356
OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA
UMLS:C0007799
brain ventricles
cerebral ventricle
region of ventricular system of brain
uberon
UBERON:0004086
brain ventricle
Any tube, opening or passage that connects two distinct anatomical spaces.
FMA has both conduit and conduit space. In EHDAA2 this is a surface feature
AEO:0000080
EHDAA2:0003080
FMA:242873
foramen
foramina
uberon
opening
ostia
ostium
UBERON:0004111
anatomical conduit
The region of the cerebral cortex covering the basal surface of the frontal lobes; this region normally controls emotion and decision making
this is a gyrus in FMA
https://www.ncbi.nlm.nih.gov/pubmed/28928072
BIRNLEX:1049
DHBA:10194
EFO:0001990
FMA:242003
UMLS:C0152301
fronto-orbital cortex
orbital frontal cortex
orbito-frontal cortex
uberon
Orbitofrontal Region
segment of cortex of frontal lobe
UBERON:0004167
orbitofrontal cortex
true
true
A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix.
BAMS:SptP
BAMS:spt
BIRNLEX:1315
BTO:0003448
DHBA:12098
FMA:61844
MA:0002979
MESH:D012688
NCIT:C33536
UMLS:C0036700
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=256
septal pellucidum
septum pellucidum of telencephalic ventricle
supracommissural septum
uberon
lateral septum
pellucidum
septum gliosum
septum lucidum
UBERON:0004714
septum pellucidum
true
Brodmann area 29, also known as granular retrolimbic area 29 or granular retrosplenial cortex, is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30 (Brodmann-1909).
A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30[BTO:0003978].
B09-29
BIRNLEX:1763
BTO:0003978
FMA:68626
UMLS:C1272490
B09-29
Brodmann (1909) area 29
Brodmann area 29
Brodmann area 29, granular retrolimbic
Brodmann's area 29
area 29 of Brodmann
area 29 of Brodmann-1909
area retrolimbica granularis
uberon
BA29
granular retrolimbic area 29
UBERON:0004717
Brodmann (1909) area 29
true
.
In the human this area is called ectosplenial area 26. It is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. It is a narrow band located in the isthmus of cingulate gyrus adjacent to the fasciolar gyrus internally. It is bounded externally by the granular retrolimbic area 29[BTO:0003979].
B09-26
BIRNLEX:1757
BTO:0003979
FMA:68623
UMLS:C1272489
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1031
B09-26
Brodmann (1909) area 26
Brodmann area 26
Brodmann area 26, ectosplenial
area 26 of Brodmann
area 26 of Brodmann-1909
area ectosplenialis
ectosplenial area
uberon
BA26
area 26 of Brodmann (guenon)
brodmann's area 26
ectosplenial area 26
UBERON:0004718
Brodmann (1909) area 26
true
A part of a wall of an organ that forms a layer.
FMA:82485
uberon
UBERON:0004923
organ component layer
A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part.
we go with the FMA classification rather than the CARO one. FMA def: 'Anatomical cluster which has as direct parts cell parts from two or more cells.'
AAO:0011000
CARO:0001000
FBbt:00007060
FMA:83115
multi-cell-component structure
multi-cell-part structure
uberon
cell part cluster
UBERON:0005162
multi cell part structure
A fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP].
EMAPA:37844
NLX:147892
dorsal commissure
uberon
UBERON:0005340
dorsal telencephalic commissure
A layer in the central nervous system that lines system of communicating cavities in the brain and spinal cord.
EMAPA:35209
FMA:242770
ventricular layer
uberon
region of wall of ventricular system of neuraxis
UBERON:0005358
ventricle of nervous system
A gray matter that is part of a cerebral hemisphere.
BTO may actually be a more generic structure; FMA may represent a more specific structure. Consider merging with gray matter of telencephalon
BTO:0000823
CALOHA:TS-2361
EMAPA:37477
FMA:61821
MA:0000944
cerebral gray matter
cerebral grey matter
cerebral hemisphere grey matter
uberon
UBERON:0005401
cerebral hemisphere gray matter
FMA:10483
bone organ zone
uberon
UBERON:0005913
zone of bone organ
any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain
any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain[MP]
EMAPA:37446
uberon
UBERON:0005970
brain commissure
Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine).
https://www.ncbi.nlm.nih.gov/pubmed/21925841
BIRNLEX:1194
DHBA:12134
EFO:0001951
FMA:77536
HBA:4103
UMLS:C0152304
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=107
inferior parietal cortex
inferior parietal lobule
uberon
inferior parietal gyrus
inferior portion of parietal gyrus
lobulus parietalis inferior
subparietal district
subparietal lobule
UBERON:0006088
inferior parietal cortex
true
Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine).
BAMS:Cun
BIRNLEX:1396
DHBA:12150
FMA:61903
HBA:4184
UMLS:C0152307
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=157
cuneate lobule
cuneus
cuneus cortex
cuneus gyrus
cuneus of hemisphere
uberon
gyrus cuneus
UBERON:0006092
cuneus cortex
true
Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine).
BAMS:PCu
BAMS:PCun
BIRNLEX:1446
DHBA:12137
FMA:61900
HBA:4118
NCIT:C112399
UMLS:C0152306
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=110
precuneate lobule
precuneus
precuneus cortex
quadrate lobule
uberon
medial area of the superior parietal cortex
praecuneus
UBERON:0006093
precuneus cortex
true
A subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It occupies the anterior transverse temporal gyrus (H) in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Cytoarchitecturally it is bounded medially by the parainsular area 52 (H) and laterally by the posterior transverse temporal area 42 (H) (Brodmann-1909). Adapted from Brain Info
UBERON:0013574
B09-41
BIRNLEX:1582
BIRNLEX:1774
FMA:68638
UMLS:C1272502
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95
B09-41
BA41
Brodmann (1909) area 41
Brodmann area 41
Brodmann area 41, anterior transverse temporal
Brodmann's area 41
anterior transverse temporal area 41
anterior transverse termporal area 41
area 41 of Brodmann
area 41 of Brodmann-1909
area temporalis transversa anterior
principle auditory receptive areas
uberon
UBERON:0006095
anterior transverse temporal area 41
true
A subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Cytoarchitecturally it is bounded medially by the anterior transverse temporal area 41(H) and laterally by the superior temporal area 22 (Brodmann-1909). Adapted from Brain Info
UBERON:0013575
B09-42
BIRNLEX:1589
BIRNLEX:1775
FMA:236867
FMA:68639
UMLS:C1272506
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=96
B09-42
BA42
Brodmann (1909) area 42
Brodmann area 42
Brodmann area 42, posterior transverse temporal
Brodmann's area 42
area 42 of Brodmann
area 42 of Brodmann-1909
area temporalis transversa posterior
auditory association area
posterior transverse temporal area 42
posterior transverse termporal area 42
uberon
auditory association cortex
UBERON:0006096
posterior transverse temporal area 42
true
.
B09-1
BIRNLEX:1732
FMA:68597
UMLS:C1272523
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1022
The term area 1 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined postcentral region of cerebral cortex. In the human it is located in the postcentral gyrus where it is bounded cytoarchitecturally by the area 3 of Brodmann (human) and the area 2 of Brodmann (human) and, at its ventral tip, by the area 43 of Brodmann (human) ( Brodmann-1909 ).
B09-1
BA1
Brodmann (1909) area 1
Brodmann area 1
Brodmann's area 1
area 1 of Brodmann
area 1 of Brodmann-1909
area postcentralis intermedia
intermediate postcentral
intermediate postcentral area
uberon
area 1 of Brodmann (guenon)
UBERON:0006099
Brodmann (1909) area 1
true
The term area 1 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined postcentral region of cerebral cortex. In the human it is located in the postcentral gyrus where it is bounded cytoarchitecturally by the area 3 of Brodmann (human) and the area 2 of Brodmann (human) and, at its ventral tip, by the area 43 of Brodmann (human) ( Brodmann-1909 ).
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2391
.
B09-3
BIRNLEX:1734
FMA:68599
UMLS:C1272525
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1006
The term area 3 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined postcentral region of cerebral cortex. In the human it is located primarily in the rostral portion of the postcentral gyrus including the caudal bank of the central sulcus. At either end of the sulcus it can extend beyond the depth of the sulcus into the precentral gyrus. Cytoarchitecturally it is bounded rostrally by the area 4 of Brodmann (human) and caudally by the area 1 of Brodmann (human) ( Brodmann-1909 ).
B09-3
BA3
Brodmann (1909) area 3
Brodmann area 3
Brodmann's area 3
area 3 of Brodmann
area 3 of Brodmann-1909
area postcentralis oralis
rostral postcentral
rostral postcentral area
uberon
area 3 of Brodmann (guenon)
UBERON:0006100
Brodmann (1909) area 3
true
The term area 3 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined postcentral region of cerebral cortex. In the human it is located primarily in the rostral portion of the postcentral gyrus including the caudal bank of the central sulcus. At either end of the sulcus it can extend beyond the depth of the sulcus into the precentral gyrus. Cytoarchitecturally it is bounded rostrally by the area 4 of Brodmann (human) and caudally by the area 1 of Brodmann (human) ( Brodmann-1909 ).
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2393
.
B09-24
BAMS:ACA
BIRNLEX:1755
FMA:68621
MBA:31
UMLS:C1272542
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1007
The term area 24 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it occupies most of the anterior cingulate gyrus in an arc around the genu of the corpus callosum. Its outer border corresponds approximately to the cingulate sulcus. Cytoarchitecturally it is bounded internally by area 33 of Brodmann externally by area 32 of Brodmann (human), and caudally by area 23 of Brodmann (human) and the area 31 of Brodmann (human) ( Brodmann-1909 ).
B09-24
BA24
Brodmann (1909) area 24
Brodmann area 24
area 24 of Brodmann
area 24 of Brodmann-1909
area cingularis anterior ventralis
ventral anterior cingulate
uberon
agranular cingulate area
anterior cingulate area
area 24 of Brodmann-1905 (guenon)
brodmann's area 24
gyrus limbicus anterior
UBERON:0006101
Brodmann (1909) area 24
true
The term area 24 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it occupies most of the anterior cingulate gyrus in an arc around the genu of the corpus callosum. Its outer border corresponds approximately to the cingulate sulcus. Cytoarchitecturally it is bounded internally by area 33 of Brodmann externally by area 32 of Brodmann (human), and caudally by area 23 of Brodmann (human) and the area 31 of Brodmann (human) ( Brodmann-1909 ).
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2113
Brodmann area 35, together with Brodmann area 36, is most frequently referred to as perirhinal cortex.
Brodmann found a cytoarchitecturally homologous area in the monkey (Cercopithecus), but it was so weakly developed that he omitted it from the cortical map of that species (Brodmann-1909).
B09-35
BIRNLEX:1768
BTO:0004356
FMA:68632
UMLS:C1272496
B09-35
BA35
Brodmann (1909) area 35
Brodmann area 35
Brodmann area 35, perirhinal
Brodmann's area 35
area 35 of Brodmann
area 35 of Brodmann-1909
area perirhinalis
perirhinal area 35
uberon
UBERON:0006102
Brodmann (1909) area 35
true
Ectorhinal area 36 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. With its medial boundary corresponding approximately to the rhinal sulcus it is located primarily in the fusiform gyrus. Cytoarchitecturally it is bounded laterally and caudally by the inferior temporal area 20, medially by the perirhinal area 35 and rostrally by the temporopolar area 38 (H) (Brodmann-1909). Together with Brodmann area 35, it comprises the perirhinal cortex.
B09-36
BIRNLEX:1769
BTO:0004357
DMBA:16086
FMA:68633
UMLS:C1272497
B09-36
BA36
Brodmann (1909) area 36
Brodmann area 36
area 36 of Brodmann
area 36 of Brodmann-1909
area ectorhinalis
ectorhinal
ectorhinal area 36
uberon
UBERON:0006104
Brodmann (1909) area 36
true
Brodmann area 5 is one of Brodmann's cytologically defined regions of the brain. It is involved in somatosensory processing and association.
B09-5
BIRNLEX:1736
FMA:68601
UMLS:C1272527
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1015
B09-5
BA5
Brodmann (1909) area 5
Brodmann area 5
Brodmann area 5, preparietal
area 5 of Brodmann-1909
area praeparietalis
preparietal area 5
uberon
area 5 of Brodmann
area 5 of Brodmann (guenon)
brodmann's area 5
preparietal area
preparietal area 5
secondary somatosensory cortex
UBERON:0006471
Brodmann (1909) area 5
true
Brodmann area 6, or BA6, is part of the frontal cortex in the human brain. Situated just anterior to the primary motor cortex, it is composed of the premotor cortex and, medially, the supplementary motor area, or SMA. This large area of the frontal cortex is believed to play a role in the planning of complex, coordinated movements. Brodmann area 6 is also called agranular frontal area 6 in humans because it lacks an internal granular cortical layer (layer IV). It is a subdivision of the cytoarchitecturally defined precentral region of cerebral cortex. In the human brain, it is located on the portions of the precentral gyrus that are not occupied by the gigantopyramidal area 4; furthermore, BA6 extends onto the caudal portions of the superior frontal and middle frontal gyri. It extends from the cingulate sulcus on the medial aspect of the hemisphere to the lateral sulcus on the lateral aspect. It is bounded rostrally by the granular frontal region and caudally by the gigantopyramidal area 4 (Brodmann, 1909).
B09-6
BIRNLEX:1737
FMA:68602
UMLS:C1272528
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1020
B09-6
BA6
Brodmann (1909) area 6
Brodmann area 6
Brodmann area 6, agranular frontal
agranular frontal area 6
area 6 of Brodmann
area 6 of Brodmann-1909
area frontalis agranularis
frontal belt
uberon
agranular frontal area
agranular frontal area 6
area 6 of Brodmann (guenon)
brodmann's area 6
UBERON:0006472
Brodmann (1909) area 6
true
.
B09-18
BIRNLEX:1749
DHBA:10271
FMA:68615
PBA:10039
UMLS:C1272536
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1027
The term area 18 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the cuneus, the lingual gyrus and the middle occipital gyrus of the occipital lobe. Cytoarchitecturally it is bounded on one side by the area 17 of Brodmann (human), from which it is distinguished by absence of a band of Gennari, and on the other by the area 19 of Brodmann (human) ( Brodmann-1909 ).
B09-18
BA18
Brodmann (1909) area 18
Brodmann area 18
Brodmann area 18, parastriate
Brodmann's area 18
area 18 of Brodmann
area 18 of Brodmann-1909
area parastriata
parastriate area 18
secondary visual area
visual area II
uberon
V2
area 18 of Brodmann (guenon)
area occipitalis
occipital area
visual area two
UBERON:0006473
Brodmann (1909) area 18
true
The term area 18 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the cuneus, the lingual gyrus and the middle occipital gyrus of the occipital lobe. Cytoarchitecturally it is bounded on one side by the area 17 of Brodmann (human), from which it is distinguished by absence of a band of Gennari, and on the other by the area 19 of Brodmann (human) ( Brodmann-1909 ).
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2109
Brodmann area 30, also known as agranular retrolimbic area 30, is a subdivision of the cytoarchitecturally defined retrosplenial region of the cerebral cortex. In the human it is located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the granular retrolimbic area 29, dorsally by the ventral posterior cingulate area 23 and ventrolaterally by the ectorhinal area 36 (Brodmann-1909).
B09-30
BIRNLEX:1764
FMA:68627
UMLS:C1272491
B09-30
BA30
Brodmann (1909) area 30
Brodmann area 30
Brodmann area 30, agranular retrolimbic
Brodmann's area 30
agranular retrolimbic area 30
area 30 of Brodmann
area 30 of Brodmann-1909
area retrolimbica agranularis
area retrosplenialis agranularis
uberon
UBERON:0006474
Brodmann (1909) area 30
true
Brodmann area 31, also known as dorsal posterior cingulate area 31, is a subdivision of the cytoarchitecturally defined cingulate region of the cerebral cortex. In the human it occupies portions of the posterior cingulate gyrus and medial aspect of the parietal lobe. Approximate boundaries are the cingulate sulcus dorsally and the parieto-occipital sulcus caudally. It partially surrounds the subparietal sulcus, the ventral continuation of the cingulate sulcus in the parietal lobe. Cytoarchitecturally it is bounded rostrally by the ventral anterior cingulate area 24, ventrally by the ventral posterior cingulate area 23, dorsally by the gigantopyramidal area 4 and preparietal area 5 and caudally by the superior parietal area 7 (H) (Brodmann-1909).
B09-31
BIRNLEX:1765
FMA:68628
UMLS:C1272492
B09-31
BA31
Brodmann (1909) area 31
Brodmann area 31
Brodmann area 31, dorsal posterior cingulate
Brodmann's area 31
area 31 of Brodmann
area 31 of Brodmann-1909
area cingularis posterior dorsalis
cinguloparietal transition area
dorsal posterior cingulate area 31
uberon
UBERON:0006475
Brodmann (1909) area 31
true
Brodmann area 33, also known as pregenual area 33, is a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. It is a narrow band located in the anterior cingulate gyrus adjacent to the supracallosal gyrus in the depth of the callosal sulcus, near the genu of the corpus callosum. Cytoarchitecturally it is bounded by the ventral anterior cingulate area 24 and the supracallosal gyrus (Brodmann-1909).
B09-33
BIRNLEX:1766
FMA:68630
UMLS:C1272494
B09-33
BA33
Brodmann (1909) area 33
Brodmann area 33
Brodmann area 33, pregenual
Brodmann's area 33
area 33 of Brodmann
area 33 of Brodmann-1909
area praegenualis
pregenual area 33
uberon
UBERON:0006476
Brodmann (1909) area 33
true
Brodmann area 34 is a part of the brain. It has been described as part of the entorhinal area. It has been described as part of the superior temporal gyrus.
B09-34
BIRNLEX:1767
FMA:68631
UMLS:C1272495
B09-34
BA34
Brodmann (1909) area 34
Brodmann area 34
Brodmann area 34, dorsal entorhinal
area 34 of Brodmann
area 34 of Brodmann-1909
area entorhinalis dorsalis
dorsal entorhinal area 34
uberon
UBERON:0006477
Brodmann (1909) area 34
true
Brodmann area 37, or BA37, is part of the temporal cortex in the human brain. This area is known as occipitotemporal area 37 (H). It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the caudal portions of the fusiform gyrus and inferior temporal gyrus on the mediobasal and lateral surfaces at the caudal extreme of the temporal lobe. Cytoarchitecturally it is bounded caudally by the peristriate Brodmann area 19, rostrally by the inferior temporal area 20 and middle temporal area 21 and dorsally on the lateral aspect of the hemisphere by the angular area 39 (H) (Brodmann-1909).
B09-37
BIRNLEX:1770
FMA:68634
UMLS:C1272498
B09-37
BA37
Brodmann (1909) area 37
Brodmann area 37
Brodmann area 37, occipitotemporal
area 37 0f brodmann
area 37 of Brodmann-1909
area occipitotemporalis
occipitotemporal area 37
uberon
UBERON:0006478
Brodmann (1909) area 37
true
Brodmann area 38, also BA38 or temporopolar area 38 (H), is part of the temporal cortex in the human brain. BA 38 is at the anterior end of the temporal lobe, known as the temporal pole. BA38 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the most rostral portions of the superior temporal gyrus and the middle temporal gyrus. Cytoarchitecturally it is bounded caudally by the inferior temporal area 20, the middle temporal area 21, the superior temporal area 22 and the ectorhinal area 36 (Brodmann-1909). Cytoarchitectonic and chemoarchitectonic studies find that it contains at least seven subareas, one of which, TG, is unique to humans. 'The functional significance of this area TG is not known, but it may bind complex, highly processed perceptual inputs to visceral emotional responses.' This area is among the earliest affected by Alzheimer's disease and the earliest involved at the start of temporal lobe seizures. [
B09-38
BIRNLEX:1771
FMA:68635
UMLS:C1272499
B09-38
BA38
Brodmann (1909) area 38
Brodmann area 38
Brodmann area 38, temporopolar
area 38 of Brodmann
area 38 of Brodmann-1909
area temporopolaris
temporopolar area 38
uberon
UBERON:0006479
Brodmann (1909) area 38
true
.
B09-39
BIRNLEX:1772
FMA:68636
UMLS:C1272500
The term area 39 of Brodmann refers to a subdivision of the cytoarchitecturally defined parietal region of cerebral cortex in the human. It corresponds to the angular gyrus surrounding the caudal tip of the superior temporal sulcus. Dorsally it is bounded approximately by the intraparietal sulcus. Cytoarchitecturally it is bounded rostrally by the area 40 of Brodmann (human), dorsally and caudally by the area 19 of Brodmann (human), and ventrally by the area 37 of Brodmann (human) ( Brodmann-1909 ).
B09-39
BA39
Brodmann (1909) area 39
Brodmann area 39
Brodmann area 39, angular
angular area 39
area 39 of Brodmann
area 39 of Brodmann-1909
area angularis
uberon
UBERON:0006480
Brodmann (1909) area 39
true
The term area 39 of Brodmann refers to a subdivision of the cytoarchitecturally defined parietal region of cerebral cortex in the human. It corresponds to the angular gyrus surrounding the caudal tip of the superior temporal sulcus. Dorsally it is bounded approximately by the intraparietal sulcus. Cytoarchitecturally it is bounded rostrally by the area 40 of Brodmann (human), dorsally and caudally by the area 19 of Brodmann (human), and ventrally by the area 37 of Brodmann (human) ( Brodmann-1909 ).
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2409
Brodmann area 44, or BA44, is part of the frontal cortex in the human brain. Situated just anterior to premotor cortex and on the lateral surface, inferior to BA9. This area is also known as pars opercularis (of the inferior frontal gyrus), and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. In the human it corresponds approximately to the opercular part of inferior frontal gyrus (H). Thus, it is bounded caudally by the inferior precentral sulcus (H) and rostrally by the anterior ascending limb of lateral sulcus (H). It surrounds the diagonal sulcus (H). In the depth of the lateral sulcus it borders on the insula. Cytoarchitectonically it is bounded caudally and dorsally by the agranular frontal area 6, dorsally by the granular frontal area 9 and rostrally by the triangular area 45 (Brodmann-1909).
B09-44
BIRNLEX:1776
FMA:68641
UMLS:C1272509
B09-44
BA44
Brodmann (1909) area 44
Brodmann area 44
Brodmann area 44, opercular
area 44 of Brodmann
area 44 of Brodmann-1909
area opercularis
opercular area 44
uberon
UBERON:0006481
Brodmann (1909) area 44
true
Part of the cytoarchitecturally defined frontal region of cerebral cortex. In the human, it occupies the triangular part of the inferior frontal gyrus (human) and, surrounding the anterior horizontal limb of the lateral sulcus (human), a portion of the orbital part of the inferior frontal gyrus (human). Bounded caudally by the anterior ascending limb of the lateral sulcus (human), it borders on the insula in the depth of the lateral sulcus. Cytoarchitectonically it is bounded caudally by the opercular area 44, rostrodorsally by the area 46 of Brodmann (human) and ventrally by the area 47 of Brodmann (human) (Brodmann-1909) (Adapted from Brain Info)
Brodmann area 45 (BA45), is part of the frontal cortex in the human brain. Situated on the lateral surface, inferior to BA9 and adjacent to BA46. This area is also known as pars triangular (of the inferior frontal gyrus). In the human, it occupies the triangular part of inferior frontal gyrus (H) and, surrounding the anterior horizontal limb of lateral sulcus (H), a portion of the orbital part of inferior frontal gyrus (H). Bounded caudally by the anterior ascending limb of lateral sulcus (H), it borders on the insula in the depth of the lateral sulcus. In terms of cytoarchitecture, it is bounded caudally by the opercular area 44 (BA44), rostrodorsally by the middle frontal area 46 (BA46), and ventrally by the orbital area 47 (BA47) (Brodmann-1909)[Wikipedia:Brodmann_area_45].
B09-45
BA45
BIRNLEX:1777
FMA:68642
UMLS:C1272511
B09-45
BA45
Brodmann (1909) area 45
Brodmann area 45
Brodmann area 45, triangular
area 45 of Brodmann
area 45 of Brodmann-1909
area triangularis
triangular area 45
uberon
UBERON:0006482
Brodmann (1909) area 45
true
Brodmann area 46, or BA46, is part of the frontal cortex in the human brain. It is between BA10 and BA45. BA46 is known as middle frontal area 46. In the human it occupies approximately the middle third of the middle frontal gyrus and the most rostral portion of the inferior frontal gyrus. Brodmann area 46 roughly corresponds with the dorsolateral prefrontal cortex (DLPFC), although the borders of area 46 are based on cytoarchitecture rather than function. The DLPFC also encompasses part of granular frontal area 9, directly adjacent on the dorsal surface of the cortex. Cytoarchitecturally, BA46 is bounded dorsally by the granular frontal area 9, rostroventrally by the frontopolar area 10 and caudally by the triangular area 45 (Brodmann-1909). There is some discrepancy between the extent of BA8 (Brodmann-1905) and the same area as described by Walker (1940)
B09-46
BIRNLEX:1778
FMA:68643
UMLS:C1272512
B09-46
BA46
Brodmann (1909) area 46
Brodmann area 46
Brodmann area 46, middle frontal
area 46 of Brodmann
area 46 of Brodmann-1909
area frontalis media
middle frontal area 46
uberon
area 46
middle frontal area 46
UBERON:0006483
Brodmann (1909) area 46
true
Brodmann area 47, or BA47, is part of the frontal cortex in the human brain. Curving from the lateral surface of the frontal lobe into the ventral (orbital) frontal cortex. It is below areas BA10 and BA45, and beside BA11. This area is also known as orbital area 47. In the human, on the orbital surface it surrounds the caudal portion of the orbital sulcus (H) from which it extends laterally into the orbital part of inferior frontal gyrus (H). Cytoarchitectonically it is bounded caudally by the triangular area 45, medially by the prefrontal area 11 of Brodmann-1909, and rostrally by the frontopolar area 10 (Brodmann-1909). It incorporates the region that Brodmann identified as 'Area 12' in the monkey, and therefore, following the suggestion of Michael Petrides, some contemporary neuroscientists refer to the region as 'BA47/12. ' BA47 has been implicated in the processing of syntax in spoken and signed languages, and more recently in musical syntax.
B09-47
BIRNLEX:1779
FMA:68644
UMLS:C1272513
B09-47
BA47
Brodmann (1909) area 47
Brodmann area 47
Brodmann area 47, orbital
area 47 of Brodmann
area 47 of Brodmann-1909
area orbitalis
orbital area 47
uberon
UBERON:0006484
Brodmann (1909) area 47
true
GAID:1233
uberon
optic lobe
UBERON:0006794
This grouping class is primarily to accommodate GO
visual processing part of nervous system
The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus. These are named, from their position, the medial, anterior, lateral, and posterior orbital gyri. The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract; the portion medial to this is named the straight gyrus, and is continuous with the superior frontal gyrus on the medial surface.
BAMS:OrG
FMA:256194
orbital gyri
uberon
gyrus orbitales
UBERON:0007193
orbital gyrus
true
Gray matter of the central nervous system which is a collection of clustered nuclei.
FMA:256381
FMA:84059
uberon
cluster of neural nuclei
neural nuclei
nuclear complex
UBERON:0007245
nuclear complex of neuraxis
An axon tract that is part of a brain.
the NIFSTD class 'nerve tract' is classified under 'regional part of brain', so it may seem like it belongs here, but actually includes spinal cord tracts
FMA:83848
brain tract
uberon
landmark tracts
UBERON:0007702
tract of brain
FMA:75759
uberon
UBERON:0008334
subarachnoid sulcus
Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus.
TODO - add layers
TODO - add relationship to system (not part of, as sensory systems are peripheral)
BAMS:SS
BTO:0004353
EFO:0001391
FMA:242642
GAID:681
MBA:453
MESH:A08.186.211.730.885.213.670.675
somatic sensory cortex
uberon
primary somatic sensory cortex
somatic sensory cortex
somatosensory area
somatosensory areas
somesthetic area
UBERON:0008930
somatosensory cortex
(Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker (b71,b76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the ratbs cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the bgranular aggregateb type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the bbarrel-fieldb type (originally described by Woolsey and Van der Loos, b70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, b74).
ABA disjointness - Removed relationship: part_of UBERON:0001870 frontal cortex
S1
BAMS:S1
BAMS:SSp
DHBA:10209
EMAPA:35706
MA:0000908
MBA:322
NLX:143551
primary somatosensory cortex (area S1, areas 3,1,2)
somatosensory area 1
uberon
S1C
postcentral gyrus
primary somatosensory area
UBERON:0008933
primary somatosensory cortex
true
the area of the upper bank of the lateral sulcus that is involved in somatic sensation
TODO - check brodmann
S2
https://www.ncbi.nlm.nih.gov/pubmed/26295917
BAMS:S2
BAMS:SSs
EMAPA:35756
MA:0000918
MBA:378
somatosensory area 2
uberon
supplemental somatosensory area
UBERON:0008934
secondary somatosensory cortex
true
The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 - 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas
check dorsolateral prefrontal neocortex
DHBA:10173
FMA:276189
uberon
UBERON:0009834
dorsolateral prefrontal cortex
true
An anatomical structure that has more than one cell as a part.
CARO:0010000
FBbt:00100313
multicellular structure
uberon
UBERON:0010000
multicellular anatomical structure
A multi cell part structure that is part of a central nervous system.
FMA:83143
cell part cluster of neuraxis
neuraxis layer
uberon
UBERON:0011215
central nervous system cell part cluster
A subdivision of an anatomical system.
FBbt:00007330
FMA:67509
uberon
UBERON:0011216
organ system subdivision
A portion of gray matter that is part of a telencephalon.
UBERON:0024186
BIRNLEX:1067
FMA:83911
predominantly gray regional part of telencephalon
uberon
UBERON:0011300
gray matter of telencephalon
A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals.
sulci are considered absent from lissencephalic mammals such as mice, but they may possess fissures. For example, the Allen mouse brain Atlas includes hippocampal, rhinal and choroid fissure. For this reason we do not place a taxon constraint on this class
Indentation on the surface of the brain or spinal cord that forms a recognizable landmark, e.g., central sulcus, sulcus limitans (CUMBO)
sulci & spaces
sulcus
DHBA:10610
HBA:9352
NCIT:C32292
cerebral sulci
fissure of brain
uberon
cerebral sulci
cerebral sulcus
UBERON:0013118
sulcus of brain
Brodmann area 11 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning, reasoning, and decision making.
B09-11
area praefrontalis
BIRNLEX:1742
FMA:68608
UMLS:C1272533
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1036
B09-11
Brodmann (1909) area 11
Brodmann area 11, prefrontal
area 11 of Brodmann
area 11 of Brodmann-1909
medial orbital area
uberon
BA11
area 11 of Brodmann
area 11 of Brodmann (guenon)
area orbitalis interna
brodmann's area 11
prefrontal area 11
UBERON:0013528
Brodmann (1909) area 11
true
A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames)
BAMS:VTM
BIRNLEX:1731
FMA:68596
NCIT:C94868
WikipediaCategory:Brodmann_areas
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1032
uberon
Brodmann parcellation scheme region
Brodmann partition scheme region
Brodmann's areas
UBERON:0013529
Brodmann area
B09-2
BIRNLEX:1733
FMA:68598
UMLS:C1272524
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1033
B09-2
Brodmann (1909) area 2
Brodmann area 2
Brodmann area 2, caudal postcentral
Brodmann's area 2
area 2 of Brodmann
area 2 of Brodmann-1909
area postcentralis caudalis
caudal postcentral area
uberon
BA2
area 2 of Brodmann (guenon)
postcentral gyrus
UBERON:0013533
Brodmann (1909) area 2
true
The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter.
B09-4
BIRNLEX:1735
FMA:68600
UMLS:C1272526
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1014
B09-4
Brodmann (1909) area 4
Brodmann area 4
Brodmann area 4, gigantopyramidal
Brodmann's area 4
area 4 of Brodmann
area 4 of Brodmann-1909
area gigantopyramidalis
giant pyramidal area
uberon
BA4
area 4 of Brodmann (guenon)
UBERON:0013535
Brodmann (1909) area 4
true
Brodmann area 7 is one of Brodmann's cytologically defined regions of the brain. It is involved in locating objects in space. It serves as a point of convergence between vision and proprioception to determine where objects are in relation to parts of the body.
B09-7
BIRNLEX:1738
FMA:68604
UMLS:C1272529
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=85
B09-7
Brodmann (1909) area 7
Brodmann area 7
Brodmann area 7, superior parietal
area 7 of Brodmann
area 7 of Brodmann-1909
area parietalis superior
uberon
BA7
gyrus F3
gyrus frontalis tertius
regio subfrontalis
UBERON:0013538
Brodmann (1909) area 7
true
Brodmann area 8 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning complex movements.
B09-8
BIRNLEX:1739
FMA:68605
UMLS:C1272530
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1034
B09-8
Brodmann (1909) area 8
Brodmann area 8
Brodmann area 8, intermediate frontal
area 8 of Brodmann
area 8 of Brodmann-1909
area frontalis intermedia
intermediate frontal area
uberon
BA8
area 8 of Brodmann (guenon)
brodmann's area 8
UBERON:0013539
Brodmann (1909) area 8
true
.
B09-9
BIRNLEX:1740
FMA:68606
UMLS:C1272531
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1024
The term area 9 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex in the human. It occupies portions of the superior frontal gyrus and the middle frontal gyrus. Its approximate boundary on the medial aspect of the hemisphere is the cingulate sulcus and, on the lateral aspect, the inferior frontal sulcus. Cytoarchitecturally it is bounded dorsocaudally by area 8 of Brodmann (human), caudally by area 6 of Brodmann (human), and ventrally by area 10 of Brodmann (human), area 46 of Brodmann and area 44 of Brodmann ( Brodmann-1909 ).
B09-9
Brodmann (1909) area 9
Brodmann area 9
Brodmann area 9, granular frontal
area 9 of Brodmann
area 9 of Brodmann-1909
area frontalis granularis
granular frontal area
uberon
BA9
area 9 of Brodmann (guenon)
brodmann's area 9
UBERON:0013540
Brodmann (1909) area 9
true
The term area 9 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex in the human. It occupies portions of the superior frontal gyrus and the middle frontal gyrus. Its approximate boundary on the medial aspect of the hemisphere is the cingulate sulcus and, on the lateral aspect, the inferior frontal sulcus. Cytoarchitecturally it is bounded dorsocaudally by area 8 of Brodmann (human), caudally by area 6 of Brodmann (human), and ventrally by area 10 of Brodmann (human), area 46 of Brodmann and area 44 of Brodmann ( Brodmann-1909 ).
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2398
Brodmann area 10, or BA10, is part of the frontal cortex in the human brain. BA10 encompasses the most anterior part of the frontal cortex, known as the frontopolar region. This area is believed to play a part in strategic processes involved in memory retrieval and executive function. This area is also called frontopolar area 10, and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. It occupies the most rostral portions of the superior frontal gyrus and the middle frontal gyrus. In humans, on the medial aspect of the hemisphere it is bounded ventrally by the superior rostral sulcus (H). It does not extend as far as the cingulate sulcus. Cytoarchitecturally it is bounded dorsally by the granular frontal area 9, caudally by the middle frontal area 46, and ventrally by the orbital area 47 and by the rostral area 12 or, in an early version of Brodmann's cortical map (Brodmann-1909), the prefrontal Brodmann area 11-1909.
B09-10
BAMS:ros
BIRNLEX:1741
DHBA:146034836
FMA:68607
UMLS:C1272532
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76
B09-10
Brodmann (1909) area 10
Brodmann area 10
Brodmann area 10, frontoplar
area 10 of Brodmann
area 10 of Brodmann-1909
area frontopolaris
lateral orbital area
uberon
BA10
rostral sulcus
sulcus rectus
sulcus rectus (Krieg)
UBERON:0013541
Brodmann (1909) area 10
true
Brodmann area 12 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It occupies the most rostral portion of the frontal lobe. Brodmann-1909 did not regard it as homologous, either topographically or cytoarchitecturally, to rostral area 12 of the human. Distinctive features (Brodmann-1905): a quite distinct internal granular layer (IV) separates slender pyramidal cells of the external pyramidal layer (III) and the internal pyramidal layer (V); the multiform layer (VI) is expanded, contains widely dispersed spindle cells and merges gradually with the underlying cortical white matter; all cells, including the pyramidal cells of the external and internal pyramidal layers are inordinately small; the internal pyramidal layer (V) also contains spindle cells in groups of two to five located close to its border with the internal granular layer (IV).
UBERON:0013530
B09-12
area praefrontalis
BIRNLEX:1743
FMA:68609
UMLS:C1272534
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=77
B09-12
Brodmann (1909) area 12
Brodmann area 12
Brodmann area 12, prefrontal
area 12 of Brodmann
area 12 of Brodmann-1909
area praefrontalis
frontopolar area
uberon
BA12
sulcus fronto-orbitalis
UBERON:0013543
Brodmann (1909) area 12
true
Brodmann area 19, or BA19, is part of the occipital lobe cortex in the human brain. Along with area 18, it comprises the extrastriate (or peristriate) cortex. In normally-sighted humans, extrastriate cortex is a visual association area, with feature-extracting, shape recognition, attentional, and multimodal integrating functions. This area is also known as peristriate area 19, and it refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the lingual gyrus, the cuneus, the lateral occipital gyrus (H) and the superior occipital gyrus (H) of the occipital lobe where it is bounded approximately by the parieto-occipital sulcus. Cytoarchitecturally it is bounded on one side by the parastriate area 18 which it surrounds. Rostrally it is bounded by the angular area 39 (H) and the occipitotemporal area 37 (H) (Brodmann-1909).
B09-19
BIRNLEX:1750
FMA:68616
UMLS:C1272537
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1028
B09-19
Brodmann (1909) area 19
Brodmann area 19
Brodmann area 19, peristriate
Brodmann's area 19
area 19 of Brodmann
area 19 of Brodmann-1909
area peristriata
preoccipital area
uberon
BA19
area 19 of Brodmann (guenon)
area praeoccipitalis
UBERON:0013550
Brodmann (1909) area 19
true
Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted].
B09-21
BIRNLEX:1752
FMA:68618
UMLS:C1272539
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1016
B09-21
BA21
Brodmann (1909) area 21
Brodmann area 21
Brodmann area 21, middle temporal
area 21 of Brodmann
area 21 of Brodmann-1909
uberon
area 21 of Brodmann (guenon)
area temporalis media
brodmann's area 21
UBERON:0013552
Brodmann (1909) area 21
true
Brodmann area 22 is one of Brodmann's cytologically defined regions of the brain. It is involved in auditory processing.
B09-22
BIRNLEX:1753
FMA:68619
UMLS:C1272540
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1017
B09-22
Brodmann (1909) area 22
Brodmann area 22
Brodmann area 22, superior temporal
Superior temporal area
area 22 of Brodmann
area 22 of Brodmann-1909
area temporalis superior
uberon
BA22
area 22 of Brodmann (guenon)
brodmann's area 22
UBERON:0013553
Brodmann (1909) area 22
true
The term area 23 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. Brodmann regarded it as topographically and cytoarchitecturally homologous to the combined ventral posterior cingulate area 23 and dorsal posterior cingulate area 31 of the human (Brodmann-1909). Distinctive Features (Brodmann-1905): the cortex is relatively thin; smaller cells predominate; the cell density of the multiform layer (VI) is great, producing a distinct boundary with the subcortical white matter; the internal granular layer (IV) is rather well developed; the internal pyramidal layer (V) contains a dense population of round, medium-sized ganglion cells concentrated at the border with layer IV; layers V and VI are narrow with a distinct mutual boundary.nn* Definition Source NeuroNames
B09-23
BIRNLEX:1754
FMA:68620
UMLS:C1272541
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1018
B09-23
Brodmann (1909) area 23
Brodmann area 23
Brodmann area 23, ventral posterior cingulate
area 23 of Brodmann
area 23 of Brodmann-1909
area cingularis posterior ventralis
granular cingulate area
posterior cingulate area
uberon
BA23
area 23 of Brodmann (guenon)
area cingularis posterior
brodmann's area 23
ventral posterior cingulate area
UBERON:0013554
Brodmann (1909) area 23
true
Brodmann area 25 (BA25) is an area in the cerebral cortex of the brain and delineated based on its cytoarchitectonic characteristics. It is also called the subgenual area or area subgenualis. It is the 25th 'Brodmann area' defined by Korbinian Brodmann (thus its name). BA25 is located in the cingulate region as a narrow band in the caudal portion of the subcallosal area adjacent to the paraterminal gyrus. The posterior parolfactory sulcus separates the paraterminal gyrus from BA25. Rostrally it is bound by the prefrontal area 11 of Brodmann.
B09-25
BIRNLEX:1756
FMA:68622
UMLS:C1272543
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1029
B09-25
Brodmann (1909) area 25
Brodmann area 25
Brodmann area 25, subgenual
Brodmann's area 25
area 25 of Brodmann
area 25 of Brodmann-1909
area subgenualis
uberon
BA25
area 25 of Brodmann (guenon)
UBERON:0013556
Brodmann (1909) area 25
true
Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted].
B09-27
BIRNLEX:1758
FMA:68624
UMLS:C0175194
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1039
B09-27
BA27
Brodmann (1909) area 27
Brodmann area 26, presubicular
Brodmann area 27
area 27
area 27 of Brodmann
area 27 of Brodmann-1909
area praesubicularis
presubicular area
uberon
area 27 of Brodmann (guenon)
brodmann's area 27
UBERON:0013558
Brodmann (1909) area 27
true
.
B09-28
https://www.ncbi.nlm.nih.gov/pubmed/10775518
BIRNLEX:1759
FMA:68625
UMLS:C0598377
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1030
B09-28
BA28
Brodmann (1909) area 28
Brodmann area 28
Brodmann area 28, entorhinal
area 28 of Brodmann
area 28 of Brodmann (Crosby)
area 28 of Brodmann-1909
area entorhinalis
area entorhinalis ventralis
uberon
area 28 of Brodmann (guenon)
UBERON:0013559
Brodmann (1909) area 28
true
The Brodmann area 32, also known in the human brain as the dorsal anterior cingulate area 32, refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it forms an outer arc around the anterior cingulate gyrus. The cingulate sulcus defines approximately its inner boundary and the superior rostral sulcus (H) its ventral boundary; rostrally it extends almost to the margin of the frontal lobe. Cytoarchitecturally it is bounded internally by the ventral anterior cingulate area 24, externally by medial margins of the agranular frontal area 6, intermediate frontal area 8, granular frontal area 9, frontopolar area 10, and prefrontal area 11-1909. (Brodmann19-09). Dorsal region of anterior cingulate gyrus is associated with rational thought processes, most notably active during the Stroop task.
B09-32
BIRNLEX:1760
EMAPA:36447
FMA:68629
MBA:972
UMLS:C1272493
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1021
B09-32
Brodmann (1909) area 32
Brodmann area 32
Brodmann area 32, dorsal anterior cingulate
Prelimbic area
area 32 of Brodmann
area 32 of Brodmann-1909
area cingularis anterior dorsalis
uberon
BA32
area 25 of Brodmann-1905
area 32 of Brodmann (guenon)
area praelimbica
brodmann's area 32
UBERON:0013560
Brodmann (1909) area 32
true
Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted].
B09-40
BIRNLEX:1773
FMA:68637
UMLS:C1272501
B09-40
Brodmann (1909) area 40
Brodmann area 40
Brodmann area 40, supramarginal
Supramarginal area 40
area 40 of Brodmann
area 40 of Brodmann-1909
area supramarginalis
uberon
UBERON:0013573
Brodmann (1909) area 40
true
A gyrus that is part of a occipital lobe.
BAMS:OG
BIRNLEX:747
UMLS:C1110642
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=152
uberon
gyrus occipitalis
UBERON:0014640
occipital gyrus
A gyrus that is part of a frontal cortex.
NCIT:C32636
uberon
UBERON:0015593
frontal gyrus
Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border.
Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though
frontal region
regio frontalis
BAMS:Frontal_lobe
BIRNLEX:928
BM:Tel-Cx-FR
CALOHA:TS-0389
DHBA:12113
EFO:0000913
EV:0100167
FMA:61824
HBA:4009
MAT:0000505
MESH:A08.186.211.730.885.213.270
NCIT:C12352
OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA
UMLS:C0016733
UMLS:C1268977
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=56
lobi frontales
lobus frontalis
frontal cortex
uberon
UBERON:0016525
frontal lobe
http://www.case.edu/EpSO.owl#FrontalLobe
true
Subdivision of telencephalon which is one of a number of subdivisions of each hemisphere separated by both real landmarks (sulci and fissures) and arbitrary boundaries[FMA,modified].
UBERON:0000322
BIRNLEX:922
BTO:0000445
FMA:61823
cerebral hemisphere lobe
cerebral lobe
lobe of cerebral cortex
lobe parts of cerebral cortex
lobi cerebri
uberon
cerebral cortical segment
lobes of the brain
regional organ part of cerebral cortex
segment of cerebral cortex
UBERON:0016526
We use the term lobe broadly as a rough regional area, encompassing homologous regions in smooth-brained mammals. We subdivide the lobes into white matter and neocortical parts.
lobe of cerebral hemisphere
Grey matter neocortex region of a lobe of the cerebral hemisphere.
FMA:242197
cortex of cerebral hemisphere lobe
cortex of lobe of cerebral hemisphere
uberon
gray matter of lobe of cerebral hemisphere
neocortical part of cerebral hemisphere
UBERON:0016529
cortex of cerebral lobe
Gray matter of the parietal region of the neocortex, located in the parietal lobe of gyrencephalic animals. It is continuous anteriorly with the frontal cortex, posteriorly with the occipital cortex and medially with the insular cortex and with the temporal cortex on the posterior/inferior border.
https://www.ncbi.nlm.nih.gov/pubmed/29519472
DHBA:10208
DMBA:16016
EMAPA:35667
FMA:242203
MA:0000916
NLX:79282
cortex of parietal lobe
parietal lobe cortex
parietal neocortex
uberon
gray matter of parietal lobe
UBERON:0016530
parietal cortex
true
A layer of of the central nervous system that is part of gray matter.
grey matter layer
FMA:83142
CNS gray matter layer
CNS grey matter layer
gray matter layer of neuraxis
grey matter layer of neuraxis
uberon
UBERON:0016548
central nervous system gray matter layer
The premotor cortex is an area of motor cortex lying within the frontal lobe of the brain. It extends 3 mm anterior to the primary motor cortex, near the Sylvian fissure, before narrowing to approximately 1 mm near the medial longitudinal fissure, which serves as the posterior border for the prefrontal cortex. The premotor cortex is largely equivalent to Brodmann area 6. Activity within this region is critical to the sensory guidance of movement and control of proximal and trunk muscles of the body.
DHBA:10168
FMA:224852
MBA:993
premotor cortex (area 6)
uberon
intermediate precentral cortex
nonprimary motor cortex
premotor
premotor area
premotor cortex
premotor region
promotor cortex
secondary motor areas
secondary motor cortex
secondary somatomotor areas
UBERON:0016634
premotor cortex
true
DHBA:10157
FMA:268608
uberon
UBERON:0019264
gray matter of forebrain
HBA:9220
telencephalic commissures
uberon
UBERON:0019294
commissure of telencephalon
HBA:9386
NCIT:C33196
occipital lobe sulcus
uberon
UBERON:0019303
occipital sulcus
Single layer of a laminar structure, identified by different density, arrangement or size of cells and processes arranged in flattened layers or lamina[CUMBO].
this is currently used to group some cellular layers that may not strictly conform to the CARO definition of cell-part layer. Consider genericisizing and introducing subtypes for cellular layer, fibrous layer and cell soma layer
lamina
layer
NLX:149357
uberon
UBERON:0022303
nervous system cell part layer
BIRNLEX:1304
composite part spanning multiple base regional parts of brain
uberon
UBERON:0022776
composite part spanning multiple base regional parts of brain
The ventral topographic division of the midbrain; the dorsal topographic division is the tectum. Meckel (1817; see English translation, 1832, vol. 2, p. 467) apparently introduced the term and roughly its definition here for macrodissected adult humans, except he excluded the cerebral peduncle (Tarin, 1753), a white matter tract at the base of the midbrain, which is still common today but is included here. As defined here, tegmentum refers to the whole of the midbrain (Baer, 1837) excluding the tectum but including the pretectal region (Scalia, 1972); see Swanson (2000, pp. 522, 526). Usage of this term is very complex, inconsistent, and illogical; see for example Crosby et al. (1962, pp. 221, 260, 262), Carpenter (1976, p. 367 ff.).
https://www.ncbi.nlm.nih.gov/pubmed/3987648
BIRNLEX:1031
tegmentum
uberon
UBERON:0024151
tegmentum
true
https://www.ncbi.nlm.nih.gov/pubmed/26063964
BIRNLEX:4014
The term superior calcarine sulcus refers to one of two extensions of the calcarine sulcus where it splits into two short vertically oriented branches near the occipital pole. This is the dorsally curved superior branch; the other is a symmetrical, ventrally curved inferior calcarine sulcus.
superior calcarine sulcus
uberon
sulcus calcarinus superior
superior ramus of calcarine fissure
upper calcarine sulcus
UBERON:0025096
superior calcarine sulcus
true
The term superior calcarine sulcus refers to one of two extensions of the calcarine sulcus where it splits into two short vertically oriented branches near the occipital pole. This is the dorsally curved superior branch; the other is a symmetrical, ventrally curved inferior calcarine sulcus.
http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=147
The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex.
DHBA:10236
FMA:272953
primary auditory cortex (core)
uberon
A1C
auditory complex area A1
auditory core region
primary auditory area
primary auditory cortex
UBERON:0034751
primary auditory cortex
true
The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex.
https://www.ncbi.nlm.nih.gov/pubmed/11377839
DHBA:10239
FMA:272944
belt auditory area
peripheral auditory cortex
second auditory area
secondary auditory cortex (belt, area 42)
uberon
A42
belt area of auditory complex
second auditory area
second auditory cortex
UBERON:0034752
secondary auditory cortex
true
A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology.
uberon
UBERON:0034768
morphological feature
A collection of anatomical structures that are alike in terms of their morphology or developmental origin.
resolve if this should be a subclass of disconnected anatomical group. Some collections (e.g. the skeleton or skull) are arguably connected
uberon
UBERON:0034925
anatomical collection
FMA:55268
organ sector
organ zonal region
organ zone
uberon
organ region with floating fiat boundary
UBERON:0034944
zone of organ
A brain region defined by functional criteria, e.g. auditory cortex, rather than by structural or histological criteria.
NLX:155513
uberon
UBERON:0035014
functional part of brain
HBA:9370
parietal lobe sulci
parietal lobe sulcus
uberon
PLs
UBERON:0035927
sulcus of parietal lobe
The junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe.
BTO:0005601
FMA:77534
RadLex:RID6449
Talairach:1047
lobulus paracentralis
uberon
UBERON:0035933
paracentral lobule
true
true
Non-invasive methods of visualizing and measuring the CENTRAL NERVOUS SYSTEM, especially the brain, by various imaging modalities e.g. CT scan
Dani Welter
true
brain imaging
is about MSH:D059906
neuroimaging measurement
quantification of the pattern of links between distinct units within a nervous system through neuroimaging techniques such a MRI
Dani Welter
true
brain connectivity measurement
https://www.ncbi.nlm.nih.gov/pubmed/18209276
The Zung Self-Rating Anxiety Scale (SAS) is a method of measuring levels of anxiety in patients who have anxiety-related symptoms. The scale focuses on the most common general anxiety disorders; coping with stress typically causes anxiety. The SAS test is self-administered, with each response using a 4-point scale, from ‘none of the time” to “most of the time.” There are 20 questions with 15 increasing anxiety level questions and 5 decreasing anxiety questions. There are two formats, self-evaluations and clinical evaluations.
self-rating anxiety scale
Zung self-rating anxiety scale
true
The Zung Self-Rating Anxiety Scale (SAS) is a method of measuring levels of anxiety in patients who have anxiety-related symptoms. The scale focuses on the most common general anxiety disorders; coping with stress typically causes anxiety. The SAS test is self-administered, with each response using a 4-point scale, from ‘none of the time” to “most of the time.” There are 20 questions with 15 increasing anxiety level questions and 5 decreasing anxiety questions. There are two formats, self-evaluations and clinical evaluations.
https://www.statisticssolutions.com/zung-self-rating-anxiety-scale-sas/
The 'risk factor TM_BIN' concept enables a compilation of diverse concepts that are related to risk factors in Epilepsy via the Axiome 'isRiskFactorFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
risk factor TM_BIN
The 'diagnosis TM_BIN' concept enables a compilation of diverse concepts that are related to diagnosis in Epilepsy via the Axiome 'isDiagnosisFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
diagnosis TM_BIN
The 'sign and symptom TM_BIN' concept enables a compilation of diverse concepts that are related to signs and symptoms in Epilepsy via the Axiome 'isSignAndSymptomsFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
sign and symptom TM_BIN
The 'epilepsy syndrome TM_BIN' concept enables a compilation of diverse concepts that are related to syndromes in Epilepsy via the Axiome 'isSyndromeFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
epilepsy syndrome TM_BIN
The 'epilepsy imitator TM_BIN' concept enables a compilation of diverse concepts that are related to imitators of Epilepsy via the Axiome 'isImitatorFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
epilepsy imitator TM_BIN
The 'etiology TM_BIN' concept enables a compilation of diverse concepts that are related to the etiology of Epilepsy via the Axiome 'isEtiologyFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
etiology TM_BIN
The 'seizure classification TM_BIN' concept enables a compilation of diverse concepts that are related to seizure classification in Epilepsy via the Axiome 'isSeizureClassificationFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
seizure classification TM_BIN
The 'treatment TM_BIN' concept enables a compilation of diverse concepts that are related to treatment of Epilepsy via the Axiome 'isTreatmentFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
treatment TM_BIN
The 'anatomical entity TM_BIN' concept enables a compilation of diverse concepts that are related to anatomical entities in Epilepsy via the Axiome 'isAnatomicalEntityFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
anatomical entity TM_BIN
The 'cellular process TM_BIN' concept enables a compilation of diverse concepts that are related to cellular processes in Epilepsy via the Axiome 'isAnatomicalEntityFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
cellular process TM_BIN
connectivity
functional connectivity
Functional connectivity is defined as the temporal dependency of neuronal activation patterns of anatomically separated brain regions.
brain functional connectivity
brain connectivity
seizure event
seizure network
epileptic seizure network
brain functional connectivity network
functional connectivity measure
global connectivity measure
brain functional connectivity measure
https://pubmed.ncbi.nlm.nih.gov/21447894/
preictal
Preictal psychiatric symptoms usually consist of cluster of symptoms preceding seizures of variable duration, ranging from a few minutes up to three days.
pre-ictal
https://pubmed.ncbi.nlm.nih.gov/32174810/
stereotactic EEG
Stereotactic electroencephalogaphy (sEEG) utilizes localized, penetrating depth electrodes to measure electrophysiological brain activity.
stereotactic electroencephalogaphy
https://pubmed.ncbi.nlm.nih.gov/21447894/
interictal
Patients with epilepsy may experience psychiatric symptoms preceding the seizure (preictal), following the seizure (postictal), independently of seizure occurrence (interictal), or as an expression of the seizure (ictal).
inter-ictal
https://pubmed.ncbi.nlm.nih.gov/22460695/
The intracranial electrode is used for interacranial monitoring: depth electrodes, subdural strip electrodes, and subdural grid electrodes.
intracranial electrode
Automotor seizures are complex motor seizures characterized primarily by automatisms of the distal segments of body, including in particular the fingers, hands, tongue and lips.
automotor seizure
multi-contact electrode
AMPA receptor antibodies may present with limbic encephalitis and are most commonly found in older patients in association with cancers of the thymus, breast or lung. Diagnosis is supported by identification of AMPA receptor antibody in serum. Given the risk of cancer, this should be excluded.
AMPA receptor antibody
true
AMPA receptor antibodies may present with limbic encephalitis and are most commonly found in older patients in association with cancers of the thymus, breast or lung. Diagnosis is supported by identification of AMPA receptor antibody in serum. Given the risk of cancer, this should be excluded.
https://www.epilepsydiagnosis.org/aetiology/antibody-mediated-overview.html#ampa
https://www.ncbi.nlm.nih.gov/pubmed/29960852
The Atkins diet is a low-carb diet, usually recommended for weight loss.
Atkins diet
http://purl.bioontology.org/ontology/SNOMEDCT/407667003
true
The Atkins diet is a low-carb diet, usually recommended for weight loss.
https://www.healthline.com/nutrition/atkins-diet-101
https://www.ncbi.nlm.nih.gov/pubmed/11684349
El mouse is a model of hereditary sensory precipitated temporal lobe epilepsy. All adult El mice given rhythmic vestibular stimulation (e.g. tossing, rocking) during development will experience tonic-clonic convulsions when given similar stimulation as adults.
El mice
El mouse
true
El mouse is a model of hereditary sensory precipitated temporal lobe epilepsy. All adult El mice given rhythmic vestibular stimulation (e.g. tossing, rocking) during development will experience tonic-clonic convulsions when given similar stimulation as adults.
https://www.ncbi.nlm.nih.gov/pubmed/2498069
GABA-B receptor antibodies may present with limbic encephalitis and are most commonly found in adults with small cell lung cancer. Diagnosis is supported by identification of GABA-B receptor antibody in serum.
GABA-B receptor antibody
true
GABA-B receptor antibodies may present with limbic encephalitis and are most commonly found in adults with small cell lung cancer. Diagnosis is supported by identification of GABA-B receptor antibody in serum.
https://www.epilepsydiagnosis.org/aetiology/antibody-mediated-overview.html#gabab
Low titers of GAD65 are commonly seen as a marker of thyrogastric autoimmunity and are not concerning for neurological disease. Very high titers (>20 nmol/l in serum) can be associated with variable neurological symptoms including limbic encephalitis. Diagnosis is supported by identification of GAD65 antibody in serum.
GAD65 antibody
true
Low titers of GAD65 are commonly seen as a marker of thyrogastric autoimmunity and are not concerning for neurological disease. Very high titers (>20 nmol/l in serum) can be associated with variable neurological symptoms including limbic encephalitis. Diagnosis is supported by identification of GAD65 antibody in serum.
https://www.epilepsydiagnosis.org/aetiology/antibody-mediated-overview.html#gad65
The International League Against Epilepsy (ILAE) presents a revised operational classification of seizure types. The purpose of such a revision is to recognize that some seizure types can have either a focal or generalized onset, to allow classification when the onset is unobserved, to include some missing seizure types, and to adopt more transparent names.
ILAE classification
International League Against Epilepsy classification
The International League Against Epilepsy (ILAE) presents a revised operational classification of seizure types. The purpose of such a revision is to recognize that some seizure types can have either a focal or generalized onset, to allow classification when the onset is unobserved, to include some missing seizure types, and to adopt more transparent names.
https://www.ilae.org/guidelines/definition-and-classification/operational-classification-2017
A burst of somewhat variable appearance, consisting most commonly of a high voltage negative slow wave followed by a smaller positive slow wave frequently associated with a sleep spindle. Amplitude is generally maximal in the frontal vertex. K complexes occur during non- REM sleep, apparently spontaneously, or in response to sudden sensory stimuli, and are not specific for any individual sensory modality.
K complex
https://emedicine.medscape.com/article/1139332-overview#a1
true
A burst of somewhat variable appearance, consisting most commonly of a high voltage negative slow wave followed by a smaller positive slow wave frequently associated with a sleep spindle. Amplitude is generally maximal in the frontal vertex. K complexes occur during non- REM sleep, apparently spontaneously, or in response to sudden sensory stimuli, and are not specific for any individual sensory modality.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23K_Complex&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/1834893
A seizure model involving slow intravenous infusion of the excitatory amino acid N-methyl-DL-aspartate (NMDLA) in the mouse, eliciting tonic-clonic seizure in dose-depended manner.
N-methyl-DL-aspartate model
Modified definition
true
Panayiotopoulos syndrome is characterized by the onset in early childhood of focal autonomic seizures that are often prolonged. The EEG commonly shows high amplitude focal spikes and may be activated by sleep. Seizures are infrequent in most patients, with 25% only having a single seizure (which may be autonomic status epilepticus) and 50% having six seizures or less. Seizures are self-limiting with remission typically within a few years from onset.
Panayiotopoulos syndrome
true
Panayiotopoulos syndrome is characterized by the onset in early childhood of focal autonomic seizures that are often prolonged. The EEG commonly shows high amplitude focal spikes and may be activated by sleep. Seizures are infrequent in most patients, with 25% only having a single seizure (which may be autonomic status epilepticus) and 50% having six seizures or less. Seizures are self-limiting with remission typically within a few years from onset.
https://www.epilepsydiagnosis.org/syndrome/panayiotopoulos-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/25568300
SCN8A-related epilepsy with encephalopathy is a condition characterized by recurrent seizures (epilepsy), abnormal brain function (encephalopathy), and intellectual disability. The signs and symptoms of this condition typically begin in infancy.The seizures in SCN8A-related epilepsy with encephalopathy include involuntary muscle contractions that occur before age 1 (infantile spasms), partial or complete loss of consciousness (absence seizures), involuntary muscle twitches (myoclonic seizures), or loss of consciousness with muscle rigidity and convulsions (tonic-clonic seizures). Most people with SCN8A-related epilepsy with encephalopathy have more than one type of seizure.
SCN8A-Related Epilepsy syndromes Class
SCN8A-related epilepsy with encephalopathy
true
SCN8A-related epilepsy with encephalopathy is a condition characterized by recurrent seizures (epilepsy), abnormal brain function (encephalopathy), and intellectual disability. The signs and symptoms of this condition typically begin in infancy.The seizures in SCN8A-related epilepsy with encephalopathy include involuntary muscle contractions that occur before age 1 (infantile spasms), partial or complete loss of consciousness (absence seizures), involuntary muscle twitches (myoclonic seizures), or loss of consciousness with muscle rigidity and convulsions (tonic-clonic seizures). Most people with SCN8A-related epilepsy with encephalopathy have more than one type of seizure.
https://ghr.nlm.nih.gov/condition/scn8a-related-epilepsy-with-encephalopathy
Subclinical rhythmic non-epileptiform electrographic discharges in adults (SREDA) consists of mixed-frequency components in the delta and theta frequency ranges that evolve into a rhythmic pattern consisting of sharp-contoured components of 5-7 Hz.
SREDA
https://www.ncbi.nlm.nih.gov/books/NBK390352/
subclinical rhythmical discharge of adults
http://www.case.edu/EpSO.owl#SubclinicalRhythmicElectrographicDischargesinAdult
Subclinical rhythmic non-epileptiform electrographic discharges in adults (SREDA) consists of mixed-frequency components in the delta and theta frequency ranges that evolve into a rhythmic pattern consisting of sharp-contoured components of 5-7 Hz.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23SubclinicalRhythmicElectrographicDischargesinAdult&jump_to_nav=true
Vertex sharp transient.
V wave
https://emedicine.medscape.com/article/1139332-overview#a1
true
Vertex sharp transient.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23V_Wave&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/31044310
The Wada test, also known as the Intracarotid Amobarbital Procedure (IAP), was named after Dr. Juhn Wada. He developed the combination of neuro-imaging and neuropsychological testing methods to examine independent functions of the brain such as memory and language. It is useful in determining which hemisphere is “dominant” for speech and if memory is functional on one or both sides of the brain.
Intracarotid Amobarbital Procedure
Wada test
true
The Wada test, also known as the Intracarotid Amobarbital Procedure (IAP), was named after Dr. Juhn Wada. He developed the combination of neuro-imaging and neuropsychological testing methods to examine independent functions of the brain such as memory and language. It is useful in determining which hemisphere is “dominant” for speech and if memory is functional on one or both sides of the brain.
http://epilepsyontario.org/wada-test/
https://www.ncbi.nlm.nih.gov/pubmed/25228809
Absence seizures are characterized by usually brief (5–10 seconds), nonconvulsive episodes of behavioral arrest and apparent unconsciousness. The WAG/Rij strain can be used as an audiogenic seizure model, it is better known as a genetic model of absence seizures.
absence seizure model
Modified definition
true
A rotation of the eyes, head, or trunk about the long axis of the body
adversive movement
true
A rotation of the eyes, head, or trunk about the long axis of the body
https://medical-dictionary.thefreedictionary.com/adversive+movement
The single-evoked epileptic afterdischarges model (AD) is another important approach to electrical stimulation. It is induced in specific brain regions, resembling complex partial seizures if applied into limbic structures and myoclonic seizures if applied into the sensorimotor cortex. AD is useful for investigating electrophysiological and behavioral correlates of focally generated seizure-like patterns that often spread to nonstimulated networks
afterdischarges model
true
The single-evoked epileptic afterdischarges model (AD) is another important approach to electrical stimulation. It is induced in specific brain regions, resembling complex partial seizures if applied into limbic structures and myoclonic seizures if applied into the sensorimotor cortex. AD is useful for investigating electrophysiological and behavioral correlates of focally generated seizure-like patterns that often spread to nonstimulated networks
https://www.ncbi.nlm.nih.gov/pubmed/25228809
https://www.ncbi.nlm.nih.gov/pubmed/25845493
In allylglycine model , DL-allylglycine inhibits glutamic acid decarboxylase (GAD) - the key enzyme in γ-aminobutyric acid (GABA) biosynthesis - leading to GABA depletion, seizures, and neuronal damage.
allylglycine model
Modified definition
true
Alpha coma / Alpha stupor (AS) refers to EEG of a comatose/stuporous patient in which alpha activity predominates.
alpha stupor
alpha coma
http://www.case.edu/EpSO.owl#AlphaComa
Alpha coma / Alpha stupor (AS) refers to EEG of a comatose/stuporous patient in which alpha activity predominates.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23AlphaComa&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603104/
Alpha rhythm is the initial starting point for visual analysis of EEG, originates from occipital region of brain and has a frequency of 8 to 13 Hertz in adults
alpha rhythm
http://www.case.edu/EpSO.owl#AlphaRhythm
https://emedicine.medscape.com/article/1139332-overview#a1
true
Alpha rhythm is the initial starting point for visual analysis of EEG, originates from occipital region of brain and has a frequency of 8 to 13 Hertz in adults
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23AlphaRhythm&jump_to_nav=true
Alpha variant consists of activity over the posterior head regions that have a harmonic relationship to the alpha rhythm and show similar activity and distribution.
alpha variant
http://www.case.edu/EpSO.owl#AlphaVariant
https://neurology.mhmedical.com/content.aspx?bookid=1042§ionid=59078723#1101635347
Alpha variant consists of activity over the posterior head regions that have a harmonic relationship to the alpha rhythm and show similar activity and distribution.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23AlphaVariant&jump_to_nav=true
Aluminum encephalopathy syndrome is a progressive encephalopathy of infants and children with chronic renal insufficiency who have taken aluminum-containing products such as phosphate binders for several years.
encephalopathy aluminum
aluminum encephalopathy syndrome
true
Aluminum encephalopathy syndrome is a progressive encephalopathy of infants and children with chronic renal insufficiency who have taken aluminum-containing products such as phosphate binders for several years.
https://www.epilepsy.com/learn/professionals/co-existing-disorders/renal-disorders/aluminum-encephalopathy-syndrome
An ambulatory EEG is where brain activity is recorded throughout the day and night over a period of one or more days. The electrodes will be attached to a small portable EEG recorder that can be clipped onto clothing.
Portable EEG
ambulatory EEG
ambulatory electroencephalography
https://www.epilepsysociety.org.uk/eeg-electroencephalogram#.XFE6tFwzbIU
true
An ambulatory EEG is where brain activity is recorded throughout the day and night over a period of one or more days. The electrodes will be attached to a small portable EEG recorder that can be clipped onto clothing.
https://www.nhs.uk/conditions/electroencephalogram/
Temporal lobe epilepsy with amygdala enlargement (TLE-AE) is increasingly recognized as a distinct adult electroclinical syndrome of heterogeneous aetiology. It is often associated with autoantibody (aab)-positive limbic encephalitis (LE) but also occurs as a (yet) aab-negative condition sometimes associated with focal cortical dysplasias or tumors of the amygdala.
amgdalar epilepsy
http://www.case.edu/EpSO.owl#AmgdalarEpilepsy
Temporal lobe epilepsy with amygdala enlargement (TLE-AE) is increasingly recognized as a distinct adult electroclinical syndrome of heterogeneous aetiology. It is often associated with autoantibody (aab)-positive limbic encephalitis (LE) but also occurs as a (yet) aab-negative condition sometimes associated with focal cortical dysplasias or tumors of the amygdala.
https://www.ncbi.nlm.nih.gov/pubmed/29934574
Pure amnestic seizures are defined as seizures during which the only clinical manifestation is the patients' inability to retain in memory what occurs during the seizure coupled with the preservation of other cognitive functions and the ability to interact normally with their physical and social environment. It is postulated that PAS result from selective ictal inactivation of mesial temporal (MT) structures without isocortical involvement.
amnestic seizure
http://www.case.edu/EpSO.owl#AmnesticSeizure
Pure amnestic seizures are defined as seizures during which the only clinical manifestation is the patients' inability to retain in memory what occurs during the seizure coupled with the preservation of other cognitive functions and the ability to interact normally with their physical and social environment. It is postulated that PAS result from selective ictal inactivation of mesial temporal (MT) structures without isocortical involvement.
https://www.ncbi.nlm.nih.gov/pubmed/1628200
Amygdala kindling is a model of temporal lobe epilepsy (TLE) with convulsion. The rapid amygdala kindling has an advantage on quick development of motor seizures and for antiepileptic drugs screening.
amygdala kindling
true
Amygdala kindling is a model of temporal lobe epilepsy (TLE) with convulsion. The rapid amygdala kindling has an advantage on quick development of motor seizures and for antiepileptic drugs screening.
https://www.ncbi.nlm.nih.gov/pubmed/27445726
Use of neuroimaging technology to measure the aspect of brain anatomy, including the integrity of brain structures and their interconnections.
anatomic neuroimaging
https://www.apa.org/action/resources/research-in-action/scan
modified definition
true
Anterior cingulate epilepsy is a diagnostic and therapeutic challenge, with a broad range of nonspecific symptoms. Seizures can arise from any region of the anterior cingulate cortex (ACC) and manifest distinctive features based on the area of onset and pattern of spread.
anterior cingulate epilepsy
http://www.case.edu/EpSO.owl#AnteriorCingulateEpilepsy
Anterior cingulate epilepsy is a diagnostic and therapeutic challenge, with a broad range of nonspecific symptoms. Seizures can arise from any region of the anterior cingulate cortex (ACC) and manifest distinctive features based on the area of onset and pattern of spread.
https://www.ncbi.nlm.nih.gov/pubmed/17514157
https://www.ncbi.nlm.nih.gov/pubmed/21532379
Frontopolar cortex (FPC) is a large region occupying the anterior portion of the brain’s frontal lobe, and has been suggested to play a role in complex, higher order behavior.
anterior frontopolar cortex
true
true
Frontopolar cortex (FPC) is a large region occupying the anterior portion of the brain’s frontal lobe, and has been suggested to play a role in complex, higher order behavior.
https://www.pnas.org/content/112/9/E1020
https://www.ncbi.nlm.nih.gov/pubmed/9932952
Epilepsy characterized by seizures arising from abnormalities in anterior temporal lobe of brain
anterior temporal epilepsy
http://www.case.edu/EpSO.owl#AnteriorTemporalEpilepsy
modified definition
Anteromesial temporal lobectomy (AMTL) is the most commonly performed surgical procedure for the treatment of patients with medically refractory epilepsy
anteromesial temporal lobectomy
Anteromesial temporal lobectomy (AMTL) is the most commonly performed surgical procedure for the treatment of patients with medically refractory epilepsy
http://www.thieme.com/media/samples/pubid1193255185.pdf
Artifact-obscured EEG refers to an ictal record that is obscured by artifacts, thereby making its interpretation difficult or impossible.
artifact obscured EEG
http://www.case.edu/EpSO.owl#ArtifactObscuredEEG
Artifact-obscured EEG refers to an ictal record that is obscured by artifacts, thereby making its interpretation difficult or impossible.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23ArtifactObscuredEEG&jump_to_nav=true
Asymmetry refers exclusively to amplitude differences of physiological EEG activity between the two hemispheres.
asymmetry pattern
http://www.case.edu/EpSO.owl#AsymmetryPattern
Asymmetry refers exclusively to amplitude differences of physiological EEG activity between the two hemispheres.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23AsymmetryPattern&jump_to_nav=true
Audiogenic models of epilepsy have been used not only for reflex epilepsy and TLE studies but also to characterize comorbidities associated with the epilepsies.
audiogenic model
true
Audiogenic models of epilepsy have been used not only for reflex epilepsy and TLE studies but also to characterize comorbidities associated with the epilepsies.
https://www.ncbi.nlm.nih.gov/pubmed/25228809
Auditory illusions are false perceptions of a real external stimulus, for example a change in intensity or a duplication of the stimulus
auditory illusion
true
Auditory illusions are false perceptions of a real external stimulus, for example a change in intensity or a duplication of the stimulus
https://www.sciencedirect.com/topics/medicine-and-dentistry/auditory-illusion
The autoimmune epilepsies are immunologically mediated disorders in which recurrent seizures are a primary and persistent clinical feature. Autoimmune epilepsy are characterized by seizures which are a common manifestation of autoimmune limbic encephalitis and multifocal paraneoplastic disorders
autoimmune epilepsy
true
The autoimmune epilepsies are immunologically mediated disorders in which recurrent seizures are a primary and persistent clinical feature. Autoimmune epilepsy are characterized by seizures which are a common manifestation of autoimmune limbic encephalitis and multifocal paraneoplastic disorders
https://www.ncbi.nlm.nih.gov/pubmed/27112680
https://www.ncbi.nlm.nih.gov/pubmed/30714986
Autoimmune disorders have long been recognized as potential causes of seizures. In the extreme, autoimmune mechanisms can lead to limbic encephalitis, an acute disorder. Patients with such disorders may respond to immunosuppressant therapies.
autoimmune seizure
true
Autoimmune disorders have long been recognized as potential causes of seizures. In the extreme, autoimmune mechanisms can lead to limbic encephalitis, an acute disorder. Patients with such disorders may respond to immunosuppressant therapies.
https://www.mayoclinic.org/medical-professionals/neurology-neurosurgery/news/new-approach-to-autoimmune-epilepsy/mac-20430556
https://www.ncbi.nlm.nih.gov/pubmed/30139784
Autonomic dysfunction was manifested by: the observation that autonomic cardiac nerves did not always respond in a predictable manner to changes in blood pressure; the development of a marked increase in variability in mean autonomic cardiac sympathetic and parasympathetic neural discharge.
autonomic imbalance
true
Autonomic dysfunction was manifested by: the observation that autonomic cardiac nerves did not always respond in a predictable manner to changes in blood pressure; the development of a marked increase in variability in mean autonomic cardiac sympathetic and parasympathetic neural discharge.
https://www.ncbi.nlm.nih.gov/pubmed/7173131
Autonomic status epilepticus is a condition lasting at least 30 minutes and characterized by epileptic activity causing altered autonomic function of any type at seizure onset or in which manifestations consistent with altered autonomic function are prominent even if not present at seizure onset.
autonomic status epilepsy
true
Autonomic status epilepticus is a condition lasting at least 30 minutes and characterized by epileptic activity causing altered autonomic function of any type at seizure onset or in which manifestations consistent with altered autonomic function are prominent even if not present at seizure onset.
https://www.ncbi.nlm.nih.gov/pubmed/17442005
https://www.ncbi.nlm.nih.gov/pubmed/28324947
AR model represents a class of linear predictive models in which the future outcome of the observed variable is predicted based on a linear combination of past outcomes and an independent identically distributed random variable.
autoregressive model
true
AR model represents a class of linear predictive models in which the future outcome of the observed variable is predicted based on a linear combination of past outcomes and an independent identically distributed random variable.
https://www.ncbi.nlm.nih.gov/pubmed/22995680
Mutations of the leucine-rich glioma-inactivated 1 (LGI1) gene cause an autosomal dominant partial epilepsy with auditory features also known as autosomal dominant lateral temporal lobe epilepsy (ADLTE).
ADLTE
autosomal-dominant lateral temporal lobe epilepsy model
true
Mutations of the leucine-rich glioma-inactivated 1 (LGI1) gene cause an autosomal dominant partial epilepsy with auditory features also known as autosomal dominant lateral temporal lobe epilepsy (ADLTE).
https://www.ncbi.nlm.nih.gov/pubmed/25312505
The frequency of the background rhythm is below the normal value.
background slow activity
true
The frequency of the background rhythm is below the normal value.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Background_Slow_Activity&jump_to_nav=true
Background suppression refers to activity which is less than 10µV.
background suppression
http://www.case.edu/EpSO.owl#BackgroundSuppression
Background suppression refers to activity which is less than 10µV.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23BackgroundSuppression&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/2345619
basal temporal epilepsy
http://www.case.edu/EpSO.owl#BasalTemporalEpilepsy
true
https://www.ncbi.nlm.nih.gov/books/NBK390347/
https://www.ncbi.nlm.nih.gov/books/NBK390352/
benign electroencephalographic (EEG) patterns which are morphologically epileptiform but are non-epileptic.
benign EEG pattern
http://www.case.edu/EpSO.owl#BenignEEGPattern
true
benign electroencephalographic (EEG) patterns which are morphologically epileptiform but are non-epileptic.
https://www.ncbi.nlm.nih.gov/pubmed/20231918
https://www.ncbi.nlm.nih.gov/books/NBK390347/
https://www.ncbi.nlm.nih.gov/books/NBK390352/
https://www.ncbi.nlm.nih.gov/pubmed/20231918
EEG patterns which are morphologically epileptiform but are non-epileptic.
benign EEG pattern
benign electroencephalographic pattern
http://www.case.edu/EpSO.owl#BenignEEGPattern
Benign focal epileptiform discharges of childhood refer to regional or multiregional sharp waves that are normally followed by a negative slow wave with lower amplitude than the negative peak of the sharp wave and ocassionally show a dipolar distribution.
BFEDC
benign focal epileptiform discharge of childhood
http://www.case.edu/EpSO.owl#BenignFocalEpileptiformDischargeofChildhood
Benign focal epileptiform discharges of childhood refer to regional or multiregional sharp waves that are normally followed by a negative slow wave with lower amplitude than the negative peak of the sharp wave and ocassionally show a dipolar distribution.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23BenignFocalEpileptiformDischargeofChildhood&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/11292215
Benign myoclonus of infancy and shuddering attacks are both benign (self limiting) variants of normal behaviour in infants and may be related conditions with differing durations of attacks. These attacks typically have onset from 4 months of age and can persist up to the age of 6-7 years, with a remitting and relapsing course.
benign myoclonus of infancy and shuddering attack
true
Benign myoclonus of infancy and shuddering attacks are both benign (self limiting) variants of normal behaviour in infants and may be related conditions with differing durations of attacks. These attacks typically have onset from 4 months of age and can persist up to the age of 6-7 years, with a remitting and relapsing course.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#shud-attacks
https://www.ncbi.nlm.nih.gov/pubmed/15032388
https://www.ncbi.nlm.nih.gov/pubmed/16302879
Benign neonatal sleep myoclonus is a normal sleep phenomenon which can be very frequent in some infants leading to misdiagnosis as myoclonic seizures or generalized tonic-clonic seizures.
BNSM
Benign neonatal sleep myoclonus
benign neonatal sleep myoclonus
true
Benign neonatal sleep myoclonus is a normal sleep phenomenon which can be very frequent in some infants leading to misdiagnosis as myoclonic seizures or generalized tonic-clonic seizures.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#bnsm
Benign paroxysmal vertigo is considered a migraine variant of childhood and is characterized by a subjective experience described by the child of the world spinning (vertigo).
benign paroxysmal vertigo
true
Benign paroxysmal vertigo is considered a migraine variant of childhood and is characterized by a subjective experience described by the child of the world spinning (vertigo).
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#benign-vertigo
https://www.ncbi.nlm.nih.gov/pubmed/1396544
In this model, beta-carbolines induce clonic and tonic-clonic seizures follwing intrapritoneal or subcutaneous administration.
beta-carboline model
true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603104/
Beta activity refers to activity with frequency range 13 to 30 Hz.
beta activity
http://www.case.edu/EpSO.owl#BetaActivity
https://emedicine.medscape.com/article/1139332-overview#a1
true
Beta activity refers to activity with frequency range 13 to 30 Hz.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23BetaActivity&jump_to_nav=true
Beta coma (BC) / Beta stupor (BS) refers to predominance of beta activity with amplitudes higher than 30µV in a comatose/stuporous patient.
beta stupor
beta coma
http://www.case.edu/EpSO.owl#BetaComa
Beta coma (BC) / Beta stupor (BS) refers to predominance of beta activity with amplitudes higher than 30µV in a comatose/stuporous patient.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23BetaComa&jump_to_nav=true
As a GABA antagonist of the action of this neurotransmitter , bicuculline produces acute focus epileptic convulsions when administered systematically or when applied topically to rats.
bicuculline model
As a GABA antagonist of the action of this neurotransmitter , bicuculline produces acute focus epileptic convulsions when administered systematically or when applied topically to rats.
https://www.ncbi.nlm.nih.gov/pubmed/20868357
bifocal encephalomalacia
http://www.case.edu/EpSO.owl#BifocalEncephalomalacia
In bi-PLEDs, periodic or semi-periodic sharp waves occur in both hemispheres but do so asynchronously between the two hemispheres
Bi-PLED
bilateral periodic lateralized epileptiform discharge
http://www.case.edu/EpSO.owl#Bi-PeriodicLateralizedEpileptiformDischarge
In bi-PLEDs, periodic or semi-periodic sharp waves occur in both hemispheres but do so asynchronously between the two hemispheres
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23Bi-PeriodicLateralizedEpileptiformDischarge&jump_to_nav=true
In biotinidase deficiency, the endogenous recycling of biotin is impaired. Epilepsy is frequent, often starting after the first 3 or 4 months of life, and often as epileptic spasms; optic atrophy and hearing loss are also often seen. Clues to the diagnosis are alopecia and dermatitis. The refractory seizures respond promptly to small doses of biotin. In holocarboxylase synthase deficiency, symptoms start during the neonatal period. Seizures are less frequent, occurring in 25-50% of all children. Biotin also is effective in this disorder.
biotinidase and holocarboxylase synthase deficiency
true
In biotinidase deficiency, the endogenous recycling of biotin is impaired. Epilepsy is frequent, often starting after the first 3 or 4 months of life, and often as epileptic spasms; optic atrophy and hearing loss are also often seen. Clues to the diagnosis are alopecia and dermatitis. The refractory seizures respond promptly to small doses of biotin. In holocarboxylase synthase deficiency, symptoms start during the neonatal period. Seizures are less frequent, occurring in 25-50% of all children. Biotin also is effective in this disorder.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html#biotinidase
a look that shows one does not understand what someone has said or does not know the answer to a question
blank stare
true
a look that shows one does not understand what someone has said or does not know the answer to a question
https://www.merriam-webster.com/dictionary/blank%20stare
Rumbling sounds caused by gas moving through the intestines
borborygmi
true
Rumbling sounds caused by gas moving through the intestines
https://www.medicinenet.com/script/main/art.asp?articlekey=25872
brain junction
true
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Breach rhythm refers to high-voltage activity that occurs in the region of a skull defect and have a spiky appearance and consist of sharply contoured arciform waveforms that usually have a frequency of 6-11 Hz.
breach rhythm
http://www.case.edu/EpSO.owl#BreachRhythm
true
Breach rhythm refers to high-voltage activity that occurs in the region of a skull defect and have a spiky appearance and consist of sharply contoured arciform waveforms that usually have a frequency of 6-11 Hz.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23BreachRhythm&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/29623857
Potassium channels are activated by the increase of the intracellular Ca2+ concentration, a consequence of neuronal excitation, and then terminate the action potential with the outward K+ flux and precludes excessive Ca2+ influx. Considering this negative feedback effect, BK channel seemly acts to decrease membrane excitability in order to prevent hyperexcitation which is a typical characteristic of epilepsy.
calcium-activated potassium channel model
modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/1283140
Seizures caused due to blockage of voltage dependent channels
channel blocker-induced seizure
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/25228809
https://www.ncbi.nlm.nih.gov/pubmed/25312505
Chemical mutagenesis is a powerful strategy to produce genetically modified mutations in many species, in which N-ethyl-N-nitrosourea (ENU) induced the mutations.
chemical mutagenesis derived model
modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/15941650
Benign childhood epilepsy with occipital paroxysms is classified among childhood benign partial epilepsies. The absence of neurological and neuropsychological deficits has long been considered as a prerequisite for a diagnosis of benign childhood partial epilepsy.
childhood epilepsy with occipital paroxysm
http://www.case.edu/EpSO.owl#ChildhoodEpilepsyWithOccipitalParoxysms
modified definition
https://www.ncbi.nlm.nih.gov/pubmed/9024190
In animal moels of chronic spontaneous limbic epilepsy, the electrographic seizures resemble the seizures recorded in humans with mesial temporal lobe epilepsy.
chronic spontaneous limbic seizure model
modified definition
true
Seizures are characterized by automatisms at onset with impaired awareness, emotion/mood and autonomic features. Focal emotional seizures with laughter (gelastic seizures) may occur.
cingulate cortex seizure
true
Seizures are characterized by automatisms at onset with impaired awareness, emotion/mood and autonomic features. Focal emotional seizures with laughter (gelastic seizures) may occur.
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/10802766
A subgroup of “frontal” focal cortical epilepsy involves the pericallosal gyrus. This type of epilepsy, termed “cingulate epilepsy,” demonstrates variable clinical seiniology and poorly localizing scalp EEG patterns.
cingulate epilepsy
http://www.case.edu/EpSO.owl#CingulateEpilepsy
modified definition
This partial crisis model is induced with the application of cobalt powder or wire on the motor cortex, and the thalamus of rats and cats. Cobalt powder is reportedly applied in high doses, resulting in the chronic status epilepticus (SE) model.
cobalt model
true
This partial crisis model is induced with the application of cobalt powder or wire on the motor cortex, and the thalamus of rats and cats. Cobalt powder is reportedly applied in high doses, resulting in the chronic status epilepticus (SE) model.
https://www.ncbi.nlm.nih.gov/pubmed/20868357
Characterized by the feeling of strangeness to people, words, and well-known circumstances, incapacity to recall the name of a known person, or incapacity to understand the words seen
cognitive aura
true
Characterized by the feeling of strangeness to people, words, and well-known circumstances, incapacity to recall the name of a known person, or incapacity to understand the words seen
https://www.ncbi.nlm.nih.gov/pubmed/28139515
Patients may have both generalized and focal seizure types, with interictal and/or ictal EEG findings that accompany both seizure types. Patients with Dravet syndrome and Lennox Gastaut syndrome may have generalized and focal epilepsy.
combined generalized and focal epilepsy
true
Patients may have both generalized and focal seizure types, with interictal and/or ictal EEG findings that accompany both seizure types. Patients with Dravet syndrome and Lennox Gastaut syndrome may have generalized and focal epilepsy.
https://www.epilepsydiagnosis.org/epilepsy/focal-generalized-epilepsy-groupoverview.html
https://www.ncbi.nlm.nih.gov/pubmed/25228809
Models exhibiting seizures longer than 15 minutes with focal onset and possible recurrence within 24 hours.
complex febrile model
modified definition
true
Complex visual hallucinations may affect some normal individuals on going to sleep and are also seen in pathological states, often in association with a sleep disturbance. The content of these hallucinations is striking and relatively stereotyped, often involving animals and human figures in bright colours and dramatic settings. Conditions causing these hallucinations include narcolepsy-cataplexy syndrome, peduncular hallucinosis, treated idiopathic Parkinson's disease, Lewy body dementia without treatment, migraine coma, Charles Bonnet syndrome (visual hallucinations of the blind), schizophrenia, hallucinogen-induced states and epilepsy.
complex visual hallucination
http://www.case.edu/EpSO.owl#ComplexVisualHallucination
Complex visual hallucinations may affect some normal individuals on going to sleep and are also seen in pathological states, often in association with a sleep disturbance. The content of these hallucinations is striking and relatively stereotyped, often involving animals and human figures in bright colours and dramatic settings. Conditions causing these hallucinations include narcolepsy-cataplexy syndrome, peduncular hallucinosis, treated idiopathic Parkinson's disease, Lewy body dementia without treatment, migraine coma, Charles Bonnet syndrome (visual hallucinations of the blind), schizophrenia, hallucinogen-induced states and epilepsy.
https://www.ncbi.nlm.nih.gov/pubmed/9798740
Compulsive valsalva can cause frequent syncope in people with learning disability, particularly those with autism. Individuals learn that through hyperventilation, followed by breath holding and a valsalva manoeuvre they can self-induce a syncope. It is presumed that this produces a pleasurable sensation. These children may also have epileptic seizures, a particular example being Rett syndrome. Video is invaluable in making the diagnosis
compulsive valsalva
true
Compulsive valsalva can cause frequent syncope in people with learning disability, particularly those with autism. Individuals learn that through hyperventilation, followed by breath holding and a valsalva manoeuvre they can self-induce a syncope. It is presumed that this produces a pleasurable sensation. These children may also have epileptic seizures, a particular example being Rett syndrome. Video is invaluable in making the diagnosis
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#compvalsalva
Stroke may occur prenatally or perinatally, with middle cerebral artery distribution stroke being common due to the nature of stroke etiologies in this age group. Infants may present with hemiplegia, which may only be diagnosed as development progresses and asymmetric motor function is recognized, such as early hand preference. Seizures may be the presenting symptom, and may have onset in the neonatal period or later. Because of the middle cerebral artery territory involvement, seizures with focal features that relate to sensori-motor cortex occur. Epileptic spasms occur in around one third of patients, generally responding to medication.
congenital stroke
true
Stroke may occur prenatally or perinatally, with middle cerebral artery distribution stroke being common due to the nature of stroke etiologies in this age group. Infants may present with hemiplegia, which may only be diagnosed as development progresses and asymmetric motor function is recognized, such as early hand preference. Seizures may be the presenting symptom, and may have onset in the neonatal period or later. Because of the middle cerebral artery territory involvement, seizures with focal features that relate to sensori-motor cortex occur. Epileptic spasms occur in around one third of patients, generally responding to medication.
https://www.epilepsydiagnosis.org/aetiology/stroke-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/30528098
The conventional EEG (cEEG) records the cerebral electrical activity of the brain. Conventional EEG provides a sensitive, direct measure of neonatal brain function and is valuable in early prediction of the neurodevelopmental outcomes of infants after brain injuries. Conventional EEG acquires the electrocortical signal through electrodes attached to the scalp
Routine EEG
conventional EEG
conventional electroencephalography
true
The conventional EEG (cEEG) records the cerebral electrical activity of the brain. Conventional EEG provides a sensitive, direct measure of neonatal brain function and is valuable in early prediction of the neurodevelopmental outcomes of infants after brain injuries. Conventional EEG acquires the electrocortical signal through electrodes attached to the scalp
https://www.medscape.com/viewarticle/749602_2
https://www.ncbi.nlm.nih.gov/pubmed/25769270
Models based on the systemic administration of chemoconvulsants to induce an initial precipitating injury (status epilepticus) that is followed by the appearance of recurrent seizures originating from limbic structures.
convulsant drug model
Modified definition
https://www.ncbi.nlm.nih.gov/pubmed/26920416
Convulsive status epilepticus is defined as a convulsive seizure lasting more than 5 min or consecutive seizures without recovery of consciousness.
convulsive status epilepticus
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/10510977
Kindling of male mice via transcorneal electrical stimulation
corneal kindling
Modified definition
true
Corpus callosotomy (CC) has been utilized as a palliative procedure for DRE for more than half a century. Transection is intended to disrupt rapid interhemispheric transcallosal propagation of seizures, particularly from regions of cortex associated with ictal motor manifestations. The target for resection is typically the anterior to mid callosum, with sparing of the posterior fibers in an attempt to mitigate the risks of a sensory disconnection syndrome.
callosotomy
corpus callosotomy
true
Corpus callosotomy (CC) has been utilized as a palliative procedure for DRE for more than half a century. Transection is intended to disrupt rapid interhemispheric transcallosal propagation of seizures, particularly from regions of cortex associated with ictal motor manifestations. The target for resection is typically the anterior to mid callosum, with sparing of the posterior fibers in an attempt to mitigate the risks of a sensory disconnection syndrome.
https://www.ncbi.nlm.nih.gov/pubmed/30806817
Delta Coma (DC) / Delta stupor (DS) refers to irregular, high voltage delta background activity in a comatose/stuporous patient.
delta stupor
delta coma
http://www.case.edu/EpSO.owl#DeltaComa
Delta Coma (DC) / Delta stupor (DS) refers to irregular, high voltage delta background activity in a comatose/stuporous patient.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23DeltaComa&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603104/
Delta activity refers to activity with a frequency range of 1 to 3 Hz.
delta rhythm
http://www.case.edu/EpSO.owl#DeltaRhythm
https://emedicine.medscape.com/article/1139332-overview#a1
true
Delta activity refers to activity with a frequency range of 1 to 3 Hz.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23DeltaRhythm&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/22995680
Deterministic models are computational models of epilepsy aim to represent the dynamics of an epileptic brain by limiting their analysis to a given spatial scale of resolution using specified initial conditions and the system parameters.
deterministic model
Modified definition
true
Diaphragmatic breathing is a type of a breathing exercise that helps strengthen your diaphragm, an important muscle that helps you breathe. This breathing exercise is also sometimes called belly breathing or abdominal breathing
deep respiration
diaphragmatic breathing
Diaphragmatic breathing is a type of a breathing exercise that helps strengthen your diaphragm, an important muscle that helps you breathe. This breathing exercise is also sometimes called belly breathing or abdominal breathing
https://www.healthline.com/health/diaphragmatic-breathing
Focal cognitive seizures are seen characterized by language impairment with difficulties reading, calculating and writing.
dominant parieto-temporal region seizure
true
Focal cognitive seizures are seen characterized by language impairment with difficulties reading, calculating and writing.
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/23027094
Dorsolateral lateral frontal lobe is one of major areas in frontal lobe. Due to its diverse functions (e.g. motor, language, cognitive and higher brain functions), dorsolateral frontal lobe seizures can present with a range of semiology. Some of these are classic, stereotypic patterns, such as the Jacksonian march associated with seizure originating in motor cortex, others can appear bizarre and suggest psychogenic events.
dorsolateral frontal cortex
true
Dorsolateral lateral frontal lobe is one of major areas in frontal lobe. Due to its diverse functions (e.g. motor, language, cognitive and higher brain functions), dorsolateral frontal lobe seizures can present with a range of semiology. Some of these are classic, stereotypic patterns, such as the Jacksonian march associated with seizure originating in motor cortex, others can appear bizarre and suggest psychogenic events.
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
The ‘dreamy state’ refers to a sensation of déjà vécu and/or complex visual hallucinations (e.g. of scenes, faces or people) and sensation of ‘strangeness’. Jackson localized this in the mesial temporal lobe (MTL).
dreamy state
true
true
The ‘dreamy state’ refers to a sensation of déjà vécu and/or complex visual hallucinations (e.g. of scenes, faces or people) and sensation of ‘strangeness’. Jackson localized this in the mesial temporal lobe (MTL).
https://academic.oup.com/brain/article/130/1/88/348244
Mouse mutant ducky, a model for absence epilepsy, is characterized by spike-wave seizures and ataxia.
ducky mouse
true
Mouse mutant ducky, a model for absence epilepsy, is characterized by spike-wave seizures and ataxia.
https://www.ncbi.nlm.nih.gov/pubmed/11487633
Dysmature EEG pattern.
EEGs are considered dysmature if they contain patterns that are at least 2 weeks immature for the conceptional age.
dysmature
http://www.case.edu/EpSO.owl#Dysmature
modified definition
Dysmature EEG pattern.
https://www.ncbi.nlm.nih.gov/pubmed/9105658
Seizures consist of autonomic and behavioural disturbances with vomiting and deviation of the eyes lasting from minutes to hours. They are mainly nocturnal and often progress to convulsions. Consciousness is usually impaired from onset or during the ictus. By definition, seizures lasting for more than half an hour are status epilepticus. In one third of these children, the phase of deviation of the eyes with vomiting and impairment of consciousness is prolonged for more than 30 minutes (partial status epilepticus) and usually ends with generalised convulsions.
Early onset benign childhood occipital epilepsy (Panayiotopoulos type)
early-onset benign childhood occipital seizure
true
Seizures consist of autonomic and behavioural disturbances with vomiting and deviation of the eyes lasting from minutes to hours. They are mainly nocturnal and often progress to convulsions. Consciousness is usually impaired from onset or during the ictus. By definition, seizures lasting for more than half an hour are status epilepticus. In one third of these children, the phase of deviation of the eyes with vomiting and impairment of consciousness is prolonged for more than 30 minutes (partial status epilepticus) and usually ends with generalised convulsions.
https://adc.bmj.com/content/78/1/3
Electrical kindling is performed 1–2 weeks after surgery, using a protocol of one stimulation per day in adult cats, and multiple stimulations per day in kittens
electrically kindled cat
true
Electrical kindling is performed 1–2 weeks after surgery, using a protocol of one stimulation per day in adult cats, and multiple stimulations per day in kittens
https://www.ncbi.nlm.nih.gov/pubmed/22938964
https://www.ncbi.nlm.nih.gov/pubmed/25687591
Electrocerebral inactivity (ECI) or electrocerebral silence (ECS) is defined as no cerebral activity greater than 2µV, having first ruled out the possible influence of sedative drugs, metabolic disorders or hypothermia.
electrocerebral inactivity
http://www.case.edu/EpSO.owl#ElectrocerebralInactivity
modified definition
https://www.ncbi.nlm.nih.gov/pubmed/24405074
Implanted EEG electrodes are often necessary to pinpoint the origin of seizure activity. They are particularly helpful for more precisely localizing seizure activity that has been identified with scalp EEG recordings. For example, the scalp recordings may determine that seizures arise from the right hemisphere. Implanted EEG electrodes can then reveal whether the epileptogenic activity arises specifically from the frontal lobe, rather than the temporal, parietal, or occipital lobes. These invasive electrodes allow EEG recording directly from the surface of the brain or from deeper cortical structures.
electrode implantation
true
Implanted EEG electrodes are often necessary to pinpoint the origin of seizure activity. They are particularly helpful for more precisely localizing seizure activity that has been identified with scalp EEG recordings. For example, the scalp recordings may determine that seizures arise from the right hemisphere. Implanted EEG electrodes can then reveal whether the epileptogenic activity arises specifically from the frontal lobe, rather than the temporal, parietal, or occipital lobes. These invasive electrodes allow EEG recording directly from the surface of the brain or from deeper cortical structures.
https://www.epilepsy.com/learn/professionals/diagnosis-treatment/surgery/implanted-eeg-electrodes
A focal or generalized flattening of the EEG due to a sudden desynchronization of brain activity.
electrodecrement
http://www.case.edu/EpSO.owl#Electrodecrement
A focal or generalized flattening of the EEG due to a sudden desynchronization of brain activity.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23Electrodecrement&jump_to_nav=true
Electrographic seizures are seizures that are evident on EEG monitoring. They are common in critically ill children and neonates with acute encephalopathy. Most electrographic seizures have no associated clinical changes, and continuous EEG monitoring is necessary for identification.
electrographic seizure
true
Electrographic seizures are seizures that are evident on EEG monitoring. They are common in critically ill children and neonates with acute encephalopathy. Most electrographic seizures have no associated clinical changes, and continuous EEG monitoring is necessary for identification.
https://www.ncbi.nlm.nih.gov/pubmed/24229615
https://www.ncbi.nlm.nih.gov/pubmed/20492865
Electrical stimulation of the brain by placing electrodes on the cornea or ears to induce motor convulsions that depend on the intensity of the stimulation
electroshock stimulation model
true
Electrical stimulation of the brain by placing electrodes on the cornea or ears to induce motor convulsions that depend on the intensity of the stimulation
https://www.ncbi.nlm.nih.gov/pubmed/20868357
Partial seizures with elementary motor symptoms, formerly called focal motor seizures, typically consist of rhythmic jerking (clonic movement) of a body region that may be limited to one finger or extend to an entire side of the body
elementary partial seizure
true
Partial seizures with elementary motor symptoms, formerly called focal motor seizures, typically consist of rhythmic jerking (clonic movement) of a body region that may be limited to one finger or extend to an entire side of the body
https://www.sciencedirect.com/topics/neuroscience/partial-seizures
Ictal vomiting or emetic seizure is considered as a localizing sign in patients with partial seizures of temporal origin.
EmeticSeizure
emetic seizure
http://www.case.edu/EpSO.owl#EmeticSeizure
Ictal vomiting or emetic seizure is considered as a localizing sign in patients with partial seizures of temporal origin.
https://www.ncbi.nlm.nih.gov/pubmed/18054131
epilepsy classification
https://www.epilepsydiagnosis.org/epilepsy/epilepsy-classification-groupoverview.html
true
There are a range of conditions associated with recurrent paroxysmal events that may imitate and be misdiagnosed as epilepsies, these are presented in this section of EpilepsyDiagnosis.org with reference to the epilepsies that they may imitate and important discriminating features. It is important that these disorders are considered in the evaluation of paroxysmal events as misdiagnosis rates in epilepsy are high throughout the world. History remains the key to a correct diagnosis with video recordings very helpful. There are some conditions in which epileptic and non-epileptic events can co-exist.
epilepsy imitator
https://stanfordhealthcare.org/medical-conditions/brain-and-nerves/epilepsy/symptoms/imitators.html
true
There are a range of conditions associated with recurrent paroxysmal events that may imitate and be misdiagnosed as epilepsies, these are presented in this section of EpilepsyDiagnosis.org with reference to the epilepsies that they may imitate and important discriminating features. It is important that these disorders are considered in the evaluation of paroxysmal events as misdiagnosis rates in epilepsy are high throughout the world. History remains the key to a correct diagnosis with video recordings very helpful. There are some conditions in which epileptic and non-epileptic events can co-exist.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#overview
epilepsy with general tonic clonic seizure on awakening
http://www.case.edu/EpSO.owl#EpilepsyWithGeneralTonicClonicSeizureOnAwakening
https://www.epilepsy.com/learn/types-epilepsy-syndromes/epilepsy-generalized-tonic-clonic-seizures-alone
true
Epileptic encephalopathy with continuous spike-and-wave during sleep is a syndrome characterized by continuous spike-and-wave during sleep, seizures and progressive decline in cognitive, behavioral and psychiatric functioning.
epileptic encephalopathy with continous spikes and wave during sleep
true
Epileptic encephalopathy with continuous spike-and-wave during sleep is a syndrome characterized by continuous spike-and-wave during sleep, seizures and progressive decline in cognitive, behavioral and psychiatric functioning.
https://www.epilepsydiagnosis.org/syndrome/ee-csws-overview.html
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Eileptiform benign variant have an epileptiform appearance but are not epileptogenic, that is, they are not associated with seizures.
epileptiform benign variant
http://www.case.edu/EpSO.owl#EpileptiformBenignVariant
true
Eileptiform benign variant have an epileptiform appearance but are not epileptogenic, that is, they are not associated with seizures.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23EpileptiformBenignVariant&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4329510/
Mutation in Kcna1 gene, which encodes for the α subunit of the voltage-gated potassium channel Kv1.1, cause episodic ataxia type 1 (EA1).
episodic ataxia type-1 model
Modified definition
true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4329510/
Cacna1a missense mutation in a N-Methyl-N-nitrosourea (MNU)-induced mutant rat strain GRY, resulted in the discovery of episodic ataxia type 2 (EA2) model rats.
episodic ataxia type-2 model
Modified definition
true
Excessive fast (EF) refers to an EEG recording in which at least 50 % of the awake recording is dominated by generalized beta activity of amplitude exceeding 50µV (reference derivation).
excessive fast pattern
http://www.case.edu/EpSO.owl#ExcessiveFastPattern
Excessive fast (EF) refers to an EEG recording in which at least 50 % of the awake recording is dominated by generalized beta activity of amplitude exceeding 50µV (reference derivation).
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23ExcessiveFastPattern&jump_to_nav=true
Experiential symptoms are illusions or hallucinations that result in erroneous interpretations of the present experience.Frequent types of experiential symptoms include deja-vu, jamais-vu, hyperfamiliarity, and out-of-body experiences termed autoscopy.
experiential sensory seizure
true
Experiential symptoms are illusions or hallucinations that result in erroneous interpretations of the present experience.Frequent types of experiential symptoms include deja-vu, jamais-vu, hyperfamiliarity, and out-of-body experiences termed autoscopy.
http://www.medlink.com/article/focal_sensory_seizures_with_experiential_symptoms
Extensor spasticity is an involuntary straightening of the legs. Extensor spasticity involves the quadriceps (muscles on the front of the upper leg) and the adductors (inner thigh muscles).
Extensor spasticity
extensor spasm
true
Extensor spasticity is an involuntary straightening of the legs. Extensor spasticity involves the quadriceps (muscles on the front of the upper leg) and the adductors (inner thigh muscles).
https://www.aans.org/Patients/Neurosurgical-Conditions-and-Treatments/Spasticity
https://www.ncbi.nlm.nih.gov/pubmed/27093945
Seizures in this area are associated with more complex formed visual hallucinations such as pictures of people, animals or scenes. These are considered as focal cognitive seizures
extra striate cortex seizure
true
true
Seizures in this area are associated with more complex formed visual hallucinations such as pictures of people, animals or scenes. These are considered as focal cognitive seizures
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/7925156
An extratemporal cortical resection is an operation to resect, or cut away, brain tissue that contains a seizure focus. Extratemporal means the tissue is located in an area of the brain other than the temporal lobe. The frontal lobe is the most common extratemporal site for seizures. In some cases, tissue may be removed from more than one area/lobe of the brain.
extratemporal cortical resection
true
true
An extratemporal cortical resection is an operation to resect, or cut away, brain tissue that contains a seizure focus. Extratemporal means the tissue is located in an area of the brain other than the temporal lobe. The frontal lobe is the most common extratemporal site for seizures. In some cases, tissue may be removed from more than one area/lobe of the brain.
https://www.webmd.com/epilepsy/guide/extratemporal-cortical-resection#1
https://www.ncbi.nlm.nih.gov/pubmed/17162190
eye rotation
true
true
Missense mutations of the Nav1.1 channel (Scn1a), which alter channel properties, have been reported in a familial syndrome of generalized epilepsy with febrile seizures plus (GEFS+).
febrile seizure model
true
Missense mutations of the Nav1.1 channel (Scn1a), which alter channel properties, have been reported in a familial syndrome of generalized epilepsy with febrile seizures plus (GEFS+).
https://www.ncbi.nlm.nih.gov/pubmed/25312505
https://www.ncbi.nlm.nih.gov/pubmed/30057567
first line immunotherapy
true
Streaks or specks of light in vision are described as flashes.
Flashes of light
flash
https://www.aao.org/eye-health/symptoms/flashes-of-light
https://www.healthline.com/health/seeing-stars-in-vision
Modified definition
true
Flexor spasticity is an involuntary bending of the hips or knees (primarily involving the hamstring muscles on the back of the upper leg). The hips and knees bend up toward the chest.
Flexor spasticity
flexor spasm
true
Flexor spasticity is an involuntary bending of the hips or knees (primarily involving the hamstring muscles on the back of the upper leg). The hips and knees bend up toward the chest.
https://www.aans.org/Patients/Neurosurgical-Conditions-and-Treatments/Spasticity
flickering light
https://www.epilepsysociety.org.uk/photosensitive-epilepsy#.Xmob-fkzbIU
true
true
In this model, a single episode of severe fluid percussion injury is sufficient to cause posttraumatic epilepsy and it may progress from frontal-parietal epilepsy to mesial temporal lobe epilepsy with dual pathology.
fluid percussion injury model
true
In this model, a single episode of severe fluid percussion injury is sufficient to cause posttraumatic epilepsy and it may progress from frontal-parietal epilepsy to mesial temporal lobe epilepsy with dual pathology.
https://www.ncbi.nlm.nih.gov/pubmed/25228809
https://www.ncbi.nlm.nih.gov/pubmed/20868357
In this model, brief exposures to flurothyl gas result in clonic seizures, followed by tonic-clonic convulsions.
flurothyl model
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/17525024
An automatism is a coordinated, repetitive motor activity, often resembling a voluntary movement, but undertaken without volition. They often occur in seizures with impaired awareness, but can occur in aware states. Focal automatism seizures can be further described using the following descriptors:
Orofacial: lip smacking, lip pursing, chewing, swallowing, clicking, eye-blinking.
Manual: unilateral or bilateral, fumbling, tapping, manipulating or exploratory movements with the hands.
Pedal: bilateral or unilateral movements of the feet/legs, these may include pacing, walking or running. The movement is more reminiscent of normal movements in amplitude, and is less frenetic or rapid in comparison to the movements seen in focal hyperkinetic seizures involving the legs.
Perseverative: the movement consists of an inappropriate continuation of pre-seizure movement.
Vocal: single or repetitive sounds such as shrieks or grunts.
Verbal: single or repetitive words, phrases or brief sentences.
Sexual: sexual behaviours.
Other: automatisms can include head nodding, undressing and a range of other automatic movements.
focal automatism seizure
true
true
An automatism is a coordinated, repetitive motor activity, often resembling a voluntary movement, but undertaken without volition. They often occur in seizures with impaired awareness, but can occur in aware states. Focal automatism seizures can be further described using the following descriptors:
Orofacial: lip smacking, lip pursing, chewing, swallowing, clicking, eye-blinking.
Manual: unilateral or bilateral, fumbling, tapping, manipulating or exploratory movements with the hands.
Pedal: bilateral or unilateral movements of the feet/legs, these may include pacing, walking or running. The movement is more reminiscent of normal movements in amplitude, and is less frenetic or rapid in comparison to the movements seen in focal hyperkinetic seizures involving the legs.
Perseverative: the movement consists of an inappropriate continuation of pre-seizure movement.
Vocal: single or repetitive sounds such as shrieks or grunts.
Verbal: single or repetitive words, phrases or brief sentences.
Sexual: sexual behaviours.
Other: automatisms can include head nodding, undressing and a range of other automatic movements.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Seizures accompanied by autonomic symptoms or signs such as sexual arousal, penile erection, and orgasm
focal autonomic seizure with erection
http://epilepsyontario.org/about-epilepsy/types-of-seizures/simple-partial-seizures/
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
Modified definition
true
Complex partial seizures characterized by lacrimation or running tears as the initial and most prominent ictal event, with no sign of crying
focal autonomic seizure with lacrimation
https://emedicine.medscape.com/article/1186872-overview
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
true
true
true
Complex partial seizures characterized by lacrimation or running tears as the initial and most prominent ictal event, with no sign of crying
https://www.ncbi.nlm.nih.gov/pubmed/25160772
Ictal piloerection (‘‘goose bumps’’) is an infrequent form ofautonomic seizures and is commonly overlooked as an ictalepileptic manifestation. Piloerection is principally considered to bean expression of ictal temporal lobe activity although otherseizure origins such as frontal or hypothalamic have beenreported. The described etiology has shown a wide variety ofstructural causes such as mesial temporal sclerosis, tumors,posttraumatic, cavernomas, and cryptogenic epilepsies
focal autonomic seizure with piloerection
http://epilepsyontario.org/about-epilepsy/types-of-seizures/simple-partial-seizures/
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
https://www.neurology-asia.org/articles/neuroasia-2018-23(2)-163.pdf
true
true
Ictal piloerection (‘‘goose bumps’’) is an infrequent form ofautonomic seizures and is commonly overlooked as an ictalepileptic manifestation. Piloerection is principally considered to bean expression of ictal temporal lobe activity although otherseizure origins such as frontal or hypothalamic have beenreported. The described etiology has shown a wide variety ofstructural causes such as mesial temporal sclerosis, tumors,posttraumatic, cavernomas, and cryptogenic epilepsies
https://www.ncbi.nlm.nih.gov/pubmed/24890932
A focal behaviour arrest seizure is characterized by a decrease in amplitude and/or rate or arrest of ongoing motor activity during the seizure. Because brief behaviour arrest is common and difficult to identify at the start of many seizures, the arrest must be persistent and dominant through the entire seizure.
focal behaviour arrest seizure
true
A focal behaviour arrest seizure is characterized by a decrease in amplitude and/or rate or arrest of ongoing motor activity during the seizure. Because brief behaviour arrest is common and difficult to identify at the start of many seizures, the arrest must be persistent and dominant through the entire seizure.
https://www.epilepsydiagnosis.org/seizure/behaviour-arrest-overview.html
The seizure commences in one hemisphere but involves bilateral muscle groups rapidly at seizure onset. Certain frontal lobe seizure sub-types have bilateral motor features at onset, often with asymmetric posturing. Typically, there is extension of the upper limb (at the elbow) contralateral to the hemisphere of seizure onset (often with a clenched fist and flexion at the wrist) and flexion of the ipsilateral upper limb at the elbow. This type of seizure is also described as a 'fencer's posture' or a figure of 4. Awareness can be preserved during the bilateral movement, resulting in misdiagnosis of the seizure as a non-epileptic seizure. These seizures can progress to a focal to bilateral tonic-clonic seizure.
focal bilateral motor seizure
true
The seizure commences in one hemisphere but involves bilateral muscle groups rapidly at seizure onset. Certain frontal lobe seizure sub-types have bilateral motor features at onset, often with asymmetric posturing. Typically, there is extension of the upper limb (at the elbow) contralateral to the hemisphere of seizure onset (often with a clenched fist and flexion at the wrist) and flexion of the ipsilateral upper limb at the elbow. This type of seizure is also described as a 'fencer's posture' or a figure of 4. Awareness can be preserved during the bilateral movement, resulting in misdiagnosis of the seizure as a non-epileptic seizure. These seizures can progress to a focal to bilateral tonic-clonic seizure.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
A focal cognitive seizure involves an alteration in a cognitive function (which can be a deficit or a positive phenomenon such as forced thought), which occurs at seizure onset. To be classified as a focal cognitive seizure, the change in cognitive function should be specific and out of proportion to other relatively unimpaired aspects of cognition, because all cognition is impaired in a focal impaired awareness seizure.
cognitive
focal cognitive seizure
true
A focal cognitive seizure involves an alteration in a cognitive function (which can be a deficit or a positive phenomenon such as forced thought), which occurs at seizure onset. To be classified as a focal cognitive seizure, the change in cognitive function should be specific and out of proportion to other relatively unimpaired aspects of cognition, because all cognition is impaired in a focal impaired awareness seizure.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/16563807
There is a specific difficulty naming everyday objects.
focal cognitive seizure with anomia
true
true
There is a specific difficulty naming everyday objects.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/books/NBK2605
Characterized by the inability to recognize or differentiate between sounds/words or relate them to their meaning. For example a person may hear a ringing sound, but may not connect this with the concept that the sound is from a telephone ringing.
focal cognitive seizure with auditory agnosia
true
true
Characterized by the inability to recognize or differentiate between sounds/words or relate them to their meaning. For example a person may hear a ringing sound, but may not connect this with the concept that the sound is from a telephone ringing.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/23667393
Characterized by an experience of being disconnected from, though aware of, self or environment.
focal cognitive seizure with dissociation
true
true
Characterized by an experience of being disconnected from, though aware of, self or environment.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/24649451
Characterized by the presence of intrusive thoughts, ideas or crowding of thoughts occurring at seizure onset. This is a rare seizure type, seen in mesial parietal, posterior parahippocampal and frontal lobe seizures.
focal cognitive seizure with forced thinking
https://www.epilepsy.com/connect/forums/living-epilepsy-adults/forced-thinking
true
true
true
Characterized by the presence of intrusive thoughts, ideas or crowding of thoughts occurring at seizure onset. This is a rare seizure type, seen in mesial parietal, posterior parahippocampal and frontal lobe seizures.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/22832396
Characterized by the creation of composite perceptions without the presence of external sensory stimuli, these may be visual (e.g. formed images), auditory (e.g. hearing voices) or involve other sensory modalities, without change in awareness. The sensory phenomena may be accompanied by associated emotion or interpretation e.g. a formed visual image may be accompanied by fear, or may be experienced as persecutory or with paranoia (i.e. with unjustified suspicion / mistrust).
focal cognitive seizure with hallucination
true
true
Characterized by the creation of composite perceptions without the presence of external sensory stimuli, these may be visual (e.g. formed images), auditory (e.g. hearing voices) or involve other sensory modalities, without change in awareness. The sensory phenomena may be accompanied by associated emotion or interpretation e.g. a formed visual image may be accompanied by fear, or may be experienced as persecutory or with paranoia (i.e. with unjustified suspicion / mistrust).
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/books/NBK2605/
Characterized by an alteration of actual perception involving visual, auditory, somatosensory, olfactory, and/or gustatory phenomena, often without obvious change in awareness.
focal cognitive seizure with illusion
true
true
Characterized by an alteration of actual perception involving visual, auditory, somatosensory, olfactory, and/or gustatory phenomena, often without obvious change in awareness.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
Characterized by inability to distinguish right from left, at the onset of the seizure. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
focal cognitive seizure with left-right confusion
true
Characterized by inability to distinguish right from left, at the onset of the seizure. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/29376090
The onset of inability to retain memory for events occurring during the seizure, while other cognitive functions and awareness are preserved in the seizure.
focal cognitive seizure with memory impairment
https://www.epilepsysociety.org.uk/how-epilepsy-can-affect-memory#.XH926ogzbIU
true
true
true
The onset of inability to retain memory for events occurring during the seizure, while other cognitive functions and awareness are preserved in the seizure.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
Characterized by unilateral failure to report or respond/orient to stimuli presented contralaterally.
focal cognitive seizure with neglect
true
Characterized by unilateral failure to report or respond/orient to stimuli presented contralaterally.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/19846832
Characterized by the presence of anger, which may be accompanied by aggressive behaviour. This is a rare seizure type, anger and aggression, if present, are mostly seen in the post-ictal period. This seizure type localizes to prefrontal or mesial temporal regions of the brain. Focal emotional seizures with anger are distinguished from tantrums and rage reactions by the absence of organized, purposeful goal-directed aggressive behaviour, by their stereotyped evolution during each event, and by the presence of other epileptic seizure features as the seizure evolves.
focal emotional seizure with anger
https://www.epilepsy.com/learn/challenges-epilepsy/moods-and-behavior/mood-and-behavior-101/aggression
true
true
true
Characterized by the presence of anger, which may be accompanied by aggressive behaviour. This is a rare seizure type, anger and aggression, if present, are mostly seen in the post-ictal period. This seizure type localizes to prefrontal or mesial temporal regions of the brain. Focal emotional seizures with anger are distinguished from tantrums and rage reactions by the absence of organized, purposeful goal-directed aggressive behaviour, by their stereotyped evolution during each event, and by the presence of other epileptic seizure features as the seizure evolves.
https://www.epilepsydiagnosis.org/seizure/emotional-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/26924970
Characterized by the presence of a positive emotional experience with pleasure, bliss, joy, enhanced personal well-being, heightened self-awareness or ecstasy. This is a rare seizure type, seen in seizures arising in the anterior insular cortex.
focal emotional seizure with pleasure
http://www.medlink.com/article/focal_sensory_seizures_with_experiential_symptoms
true
true
true
Characterized by the presence of a positive emotional experience with pleasure, bliss, joy, enhanced personal well-being, heightened self-awareness or ecstasy. This is a rare seizure type, seen in seizures arising in the anterior insular cortex.
https://www.epilepsydiagnosis.org/seizure/emotional-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/30361137
A sustained contraction of both agonist and antagonist muscles producing athetoid or twisting movements, which produces abnormal postures.
focal motor seizure with dystonia
true
true
true
A sustained contraction of both agonist and antagonist muscles producing athetoid or twisting movements, which produces abnormal postures.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/8848969
A sudden interruption in normal tonic muscle activity lasting 500 milliseconds or less, without evidence of preceding myoclonus. This is seen in the epilepsy syndrome atypical childhood epilepsy with centrotemporal spikes, where an upper limb or the head is affected by localized brief interruption in normal muscle tone. The interruption in muscle tone is briefer than seen in a focal atonic seizure. The patient may correct for the loss of tone with overshoot past the primary position.
focal motor seizure with negative myoclonus
true
true
A sudden interruption in normal tonic muscle activity lasting 500 milliseconds or less, without evidence of preceding myoclonus. This is seen in the epilepsy syndrome atypical childhood epilepsy with centrotemporal spikes, where an upper limb or the head is affected by localized brief interruption in normal muscle tone. The interruption in muscle tone is briefer than seen in a focal atonic seizure. The patient may correct for the loss of tone with overshoot past the primary position.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Onset of sustained, forced conjugate ocular, cephalic,and/or truncal rotation or lateral deviation from the midline. The laterality is important to specify as this assists in hemispheric lateralization, for example the seizure might be a focal motor seizure with ocular and cephalic version to the right.
focal motor seizure with version
true
Onset of sustained, forced conjugate ocular, cephalic,and/or truncal rotation or lateral deviation from the midline. The laterality is important to specify as this assists in hemispheric lateralization, for example the seizure might be a focal motor seizure with ocular and cephalic version to the right.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
Non-motor seizures can cause changes in any one of the senses. Generally, a person experiencing a focal onset non-motor Seizure remains alert and able to interact, and these types of seizures generally last seconds to less than two minutes.
non motor onset
focal non-motor onset seizure
https://www.epilepsydiagnosis.org/seizure/focal-seizure-overview.html
https://www.webmd.com/epilepsy/child-focal-seizure-symptoms#1
true
true
Non-motor seizures can cause changes in any one of the senses. Generally, a person experiencing a focal onset non-motor Seizure remains alert and able to interact, and these types of seizures generally last seconds to less than two minutes.
https://epilepsynewengland.org/knowledge-center/types-of-seizures/seizure-onset
https://www.ncbi.nlm.nih.gov/pubmed/26336950
focal non convulsive status epilepticus
true
https://www.ncbi.nlm.nih.gov/pubmed/26336950
focal non convulsive status epilepticus with impairment of consciousness
true
Focal seizure classification should only occur if the seizure is a focal epileptic seizure and epilepsy imitators have been excluded. Focal seizure classification is undertaken at two levels. The seizure is first classified according to level of awareness, as this is of critical importance for safety and independence in day to day life. If awareness is impaired at any point in the seizure, the seizure is a focal impaired awareness seizure. Because the first symptom/sign of the seizure is the most useful feature for identification of the regional brain network in which the seizure arises, focal onset seizures are also classified by their initial onset feature, even if this is not the most prominent feature overall in the seizure.
focal seizure classification by onset feature
true
Focal seizure classification should only occur if the seizure is a focal epileptic seizure and epilepsy imitators have been excluded. Focal seizure classification is undertaken at two levels. The seizure is first classified according to level of awareness, as this is of critical importance for safety and independence in day to day life. If awareness is impaired at any point in the seizure, the seizure is a focal impaired awareness seizure. Because the first symptom/sign of the seizure is the most useful feature for identification of the regional brain network in which the seizure arises, focal onset seizures are also classified by their initial onset feature, even if this is not the most prominent feature overall in the seizure.
https://www.epilepsydiagnosis.org/seizure/focal-seizure-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/15642493
Characterized by a sensation in the head such as light-headedness or headache.
focal sensory seizure with cephalic sensation
true
true
Characterized by a sensation in the head such as light-headedness or headache.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/15642493
https://www.ncbi.nlm.nih.gov/pubmed/27857611
Characterized by sensations of feeling hot and then cold.
focal sensory seizure with hot-cold sensation
true
true
Characterized by sensations of feeling hot and then cold.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
Characterized by symptoms of dizziness, spinning, vertigo or sense of rotation. These seizures involve the parietal cortex, temporo-parieto-occipital junction or parieto-temporal cortex.
focal sensory vestibular seizure
https://link.springer.com/chapter/10.1007/978-1-4757-3801-8_14
true
true
Characterized by symptoms of dizziness, spinning, vertigo or sense of rotation. These seizures involve the parietal cortex, temporo-parieto-occipital junction or parieto-temporal cortex.
https://www.epilepsydiagnosis.org/seizure/sensory-overview.html
A focal seizure may spread to involve wider brain networks, resulting in a focal to bilateral tonic-clonic seizure. This was previously known as a secondary generalized seizure. Consciousness is impaired. Motor components in such a situation include tonic and clonic features. This type of seizure may follow after other focal seizures types, such as focal motor seizures, focal cognitive seizures, focal sensory seizures or focal impaired awareness seizures. Alternatively, the spread in brain networks may be so rapid that no preceding focal seizure type is identified.
focal to bilateral tonic clonic seizure
https://epilepsynewengland.org/knowledge-center/types-of-seizures/focal-bilateral-tonic-clonic-seizures
https://www.epilepsy.com/learn/types-seizures/focal-bilateral-tonic-clonic-seizures-aka-secondarily-generalized-seizures
true
true
A focal seizure may spread to involve wider brain networks, resulting in a focal to bilateral tonic-clonic seizure. This was previously known as a secondary generalized seizure. Consciousness is impaired. Motor components in such a situation include tonic and clonic features. This type of seizure may follow after other focal seizures types, such as focal motor seizures, focal cognitive seizures, focal sensory seizures or focal impaired awareness seizures. Alternatively, the spread in brain networks may be so rapid that no preceding focal seizure type is identified.
https://www.epilepsydiagnosis.org/seizure/focal-bilateral-tonic-clonic-overview.html
https://www.ncbi.nlm.nih.gov/books/NBK2605/
fragmentary behavior
true
true
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Frontal arousal rhythm (FAR) consists of trains of 7 to 20Hz waveforms that occur predominantly over the frontal regions in runs lasting up to 20 seconds.
FAR
frontal arousal rhythm
http://www.case.edu/EpSO.owl#FrontalArousalRhythm
true
Frontal arousal rhythm (FAR) consists of trains of 7 to 20Hz waveforms that occur predominantly over the frontal regions in runs lasting up to 20 seconds.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23FrontalArousalRhythm&jump_to_nav=true
Fairly regular, approximately sinusoidal or saw-tooth waves, mostly occurring in bursts at 1.5-2.5 Hz over the frontal areas of one or both sides of the head.
frontal intermittent rhythmic delta activity
true
Fairly regular, approximately sinusoidal or saw-tooth waves, mostly occurring in bursts at 1.5-2.5 Hz over the frontal areas of one or both sides of the head.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Frontal_Intermittent_Rhythmic_Delta_Activity_FIRDA&jump_to_nav=true
Frontal lobe seizures are usually brief events (< 2 minutes), with stereotyped features seen from seizure to seizure and preserved awareness. Parasomnias are usually longer in duration (> 10 minutes), have variable features from event to event and are characterized by a confusional state with the patient having no memory of the event afterwards.
In parasomnias, clustering is rare and the common non-REM parasomnias typically occur 1-2 hours after falling asleep, in the first cycle of deep slow wave sleep. Nocturnal frontal lobe seizures typically occur throughout the night, and more frequently within half an hour of falling asleep or awakening.
frontal lobe seizure
https://www.mayoclinic.org/diseases-conditions/frontal-lobe-seizures/symptoms-causes/syc-20353958
true
true
Frontal lobe seizures are usually brief events (< 2 minutes), with stereotyped features seen from seizure to seizure and preserved awareness. Parasomnias are usually longer in duration (> 10 minutes), have variable features from event to event and are characterized by a confusional state with the patient having no memory of the event afterwards.
In parasomnias, clustering is rare and the common non-REM parasomnias typically occur 1-2 hours after falling asleep, in the first cycle of deep slow wave sleep. Nocturnal frontal lobe seizures typically occur throughout the night, and more frequently within half an hour of falling asleep or awakening.
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
Seizures are characterized by facial (mouth and tongue) clonic movements (which may be unilateral), laryngeal symptoms, articulation difficulty, swallowing or chewing movements and hyper-salivation. Autonomic (e.g. epigastric, urogenital, gastrointestinal, cardiovascular or respiratory) and emotional (e.g. fear) features are common. Gustatory hallucinations are particularly common.
fronto-parietal operculum seizure
true
Seizures are characterized by facial (mouth and tongue) clonic movements (which may be unilateral), laryngeal symptoms, articulation difficulty, swallowing or chewing movements and hyper-salivation. Autonomic (e.g. epigastric, urogenital, gastrointestinal, cardiovascular or respiratory) and emotional (e.g. fear) features are common. Gustatory hallucinations are particularly common.
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
Seizures may be characterized by forced thoughts, impaired awareness, ipsilateral head and eye version with possible progression to contralateral version, autonomic features and axial tonic-clonic movements resulting in falls.
frontopolar cortex seizure
true
Seizures may be characterized by forced thoughts, impaired awareness, ipsilateral head and eye version with possible progression to contralateral version, autonomic features and axial tonic-clonic movements resulting in falls.
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/19679190
frontopolar epilepsy
http://www.case.edu/EpSO.owl#FrontopolarEpilepsy
true
https://www.ncbi.nlm.nih.gov/pubmed/11554899
Seizures induced exclusively by gait disorder (characterized by abnormal posturing and movement of the left leg while walking).
gait induced seizure
Modified definition
true
true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603104/
An EEG rhythm between 30- 45 Hz.
gamma rhythm
modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/29722352
Gene panel analyses enable cost-efficient and high-quality parallel analysis of anywhere from a small number of disease-related genes to several hundred within a short period of time using next-generation sequencing.
gene panel sequencing
true
Gene panel analyses enable cost-efficient and high-quality parallel analysis of anywhere from a small number of disease-related genes to several hundred within a short period of time using next-generation sequencing.
https://www.mgz-muenchen.com/genetic-testing/gene-panel-sequencing-114
Generalized linear models (GLM) are extension of linear regression models and are used to evaluate the prevalence of cognitive co-morbidities in epilepsy
generalized linear model
true
Generalized linear models (GLM) are extension of linear regression models and are used to evaluate the prevalence of cognitive co-morbidities in epilepsy
https://www.ncbi.nlm.nih.gov/pubmed/22995680
A Generalized Onset Motor Seizure and is what most people think of when they hear the word seizure. An older term for this type of seizure is grand mal. A person loses consciousness, muscles stiffen, and jerking movements are seen. As implied by the name, they combine the characteristics of tonic seizures and clonic seizures.
generalized motor onset seizure
https://www.epilepsydiagnosis.org/seizure/generalized-seizure-groupoverview.html
true
A Generalized Onset Motor Seizure and is what most people think of when they hear the word seizure. An older term for this type of seizure is grand mal. A person loses consciousness, muscles stiffen, and jerking movements are seen. As implied by the name, they combine the characteristics of tonic seizures and clonic seizures.
https://epilepsynewengland.org/knowledge-center/types-of-seizures/generalized-motor-seizures-tonic-clonic
https://www.ncbi.nlm.nih.gov/pubmed/29327337
An absence seizure is a Generalized Onset Non-Motor Seizure. An absence seizure causes a short period of blanking out or staring into space, and are usually so brief that they frequently escape notice. Like other kinds of seizures, they are caused by abnormal activity in a person’s brain.
generalized non-motor onset seizure
https://www.epilepsydiagnosis.org/seizure/generalized-seizure-groupoverview.html
true
true
An absence seizure is a Generalized Onset Non-Motor Seizure. An absence seizure causes a short period of blanking out or staring into space, and are usually so brief that they frequently escape notice. Like other kinds of seizures, they are caused by abnormal activity in a person’s brain.
https://epilepsynewengland.org/knowledge-center/types-of-seizures/generalized-non-motor-absence-seizures
https://www.ncbi.nlm.nih.gov/pubmed/26336950
generalized non convulsive status epilepticus without coma
true
The concept of genetic epilepsy is that the epilepsy is, as best we understand, the direct result of a known or presumed genetic defect(s) in which seizures are the core symptom of the disorder. The genetic defect may arise at a chromosomal or molecular level. It is important to emphasize that "genetic" does not mean the same as "inherited" as de novo mutations are not uncommon. Having a genetic etiology does not preclude an environmental contribution to the epilepsy.
Genetic Defect
genetic etiology
http://www.case.edu/EpSO.owl#GeneticDefect
true
The concept of genetic epilepsy is that the epilepsy is, as best we understand, the direct result of a known or presumed genetic defect(s) in which seizures are the core symptom of the disorder. The genetic defect may arise at a chromosomal or molecular level. It is important to emphasize that "genetic" does not mean the same as "inherited" as de novo mutations are not uncommon. Having a genetic etiology does not preclude an environmental contribution to the epilepsy.
https://www.epilepsydiagnosis.org/aetiology/genetic-groupoverview.html
Genital automatisms (GAs) are uncommon clinical phenomena of focal seizures. They are defined as repeated fondling, grabbing, or scratching of the genitals.
genital automatism
true
Genital automatisms (GAs) are uncommon clinical phenomena of focal seizures. They are defined as repeated fondling, grabbing, or scratching of the genitals.
https://www.ncbi.nlm.nih.gov/pubmed/29414563
https://www.ncbi.nlm.nih.gov/pubmed/19423297
Also known as taste illusion. The term gustatory illusion is indebted to the Latin noun gustus, which means taste. It is used to denote an aberrant taste sensation occurring in the presence of a tastant. The group of gustatory illusions comprises dysgeusia, hypergeusia, and parageusia. The gustatory illusion is commonly classified as a chemosensory disorder.
gustatory illusion
true
Also known as taste illusion. The term gustatory illusion is indebted to the Latin noun gustus, which means taste. It is used to denote an aberrant taste sensation occurring in the presence of a tastant. The group of gustatory illusions comprises dysgeusia, hypergeusia, and parageusia. The gustatory illusion is commonly classified as a chemosensory disorder.
https://hallucinations.enacademic.com/744/gustatory_illusion
https://www.ncbi.nlm.nih.gov/pubmed/8021672
A hallucination in which one sees one's own body from a distance
heautoscopy
true
true
A hallucination in which one sees one's own body from a distance
https://www.yourdictionary.com/heautoscopy
Elevated [K+] seizure models are particularly relevant to studies of astrocytes, which play a key role in buffering extracellular K+ affecting neuronal excitability.
high potassium slice model
true
Elevated [K+] seizure models are particularly relevant to studies of astrocytes, which play a key role in buffering extracellular K+ affecting neuronal excitability.
https://www.ncbi.nlm.nih.gov/pubmed/24013377
https://www.ncbi.nlm.nih.gov/pubmed/24777136
hippocampal epilepsy
http://www.case.edu/EpSO.owl#HippocampalEpilepsy
http://www.medlink.com/article/hippocampal_and_parahippocampal_seizures
true
https://www.ncbi.nlm.nih.gov/pubmed/27070861
Hippocampal kindling models are animal models, where there is a progressive increase in electrographic and behavioral seizure activity in response to repeated stimulation of a limbic brain region such as hippocampus with an initially subconvulsive current. Kindling is associated with a progressive increase in seizure severity and duration, a decrease in focal seizure threshold, and neuronal degeneration in limbic brain regions that resemble human temporal lobe epilepsy
hippocampal kindling model
Modified definition
true
Hippocampal sclerosis is characterized pathologically by loss of pyramidal neurons, granule cell dispersion and gliosis in the hippocampus. It can be associated with changes in nearby structures, known as mesial temporal sclerosis.It a common cause of temporal lobe seizures that do not respond to medication. It is an acquired structural abnormality, and is known to occur as a consequence of seizures, especially prolonged febrile seizures. It can co-occur with other structural brain abnormalities, including malformations of cortical development and vascular malformations (e.g. Sturge Weber syndrome), known as 'dual pathology'.
hippocampal sclerosis
http://www.case.edu/EpSO.owl#MesialTemporalSclerosis
true
Hippocampal sclerosis is characterized pathologically by loss of pyramidal neurons, granule cell dispersion and gliosis in the hippocampus. It can be associated with changes in nearby structures, known as mesial temporal sclerosis.It a common cause of temporal lobe seizures that do not respond to medication. It is an acquired structural abnormality, and is known to occur as a consequence of seizures, especially prolonged febrile seizures. It can co-occur with other structural brain abnormalities, including malformations of cortical development and vascular malformations (e.g. Sturge Weber syndrome), known as 'dual pathology'.
https://www.epilepsydiagnosis.org/aetiology/hippocampal-sclerosis-overview.html
Oscillatory eye movements both in horizontal direction.
horizontal occular oscillation
https://iovs.arvojournals.org/article.aspx?articleid=2165843
Modified definition
true
hypehydrotic seizure
http://www.case.edu/EpSO.owl#HypehydroticSeizure
https://www.ncbi.nlm.nih.gov/pubmed/16302879
Hyper-cyanotic spells are most frequently seen in infants with Tetralogy of Fallot (known as 'tet spells'), however can be seen in other congenital cardiac defects with pulmonary or subpulmonary stenosis and a ventriculoseptal defect and in pulmonary hypertension. Spells may be precipitated by tachypnea or tachycardia and by dehydration. Spells may be characterized by crying, panic, rapid deep breathing, deepening cyanosis, limpness and subsequently a tonic-clonic episode. It is important that hyper-cyanotic spells are recognized as failure to manage these events correctly can lead to prolonged hypoxia and death.
hyper-cyanotic spell
true
true
Hyper-cyanotic spells are most frequently seen in infants with Tetralogy of Fallot (known as 'tet spells'), however can be seen in other congenital cardiac defects with pulmonary or subpulmonary stenosis and a ventriculoseptal defect and in pulmonary hypertension. Spells may be precipitated by tachypnea or tachycardia and by dehydration. Spells may be characterized by crying, panic, rapid deep breathing, deepening cyanosis, limpness and subsequently a tonic-clonic episode. It is important that hyper-cyanotic spells are recognized as failure to manage these events correctly can lead to prolonged hypoxia and death.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#hypercyanotic
Rodent pups have their core temperature increased to 40°C-42°C by hot air stream for 30 minutes, stimulating prolonged convulsions.
hyperthermic seizure model
true
Rodent pups have their core temperature increased to 40°C-42°C by hot air stream for 30 minutes, stimulating prolonged convulsions.
https://www.ncbi.nlm.nih.gov/pubmed/25228809
https://www.ncbi.nlm.nih.gov/pubmed/16302879
https://www.ncbi.nlm.nih.gov/pubmed/23190285
Hyperventilation syncope is a transient loss of consciousness with or without an anoxic seizure triggered by hyperventilation.
hyperventilation syncope
true
true
Hyperventilation syncope is a transient loss of consciousness with or without an anoxic seizure triggered by hyperventilation.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#hyperventilation
https://www.ncbi.nlm.nih.gov/books/NBK2609/
Sleep starts or hypnic or hypnogogic jerks are normal phenomena experienced by the majority of children and adults at sleep onset, to variable degrees. They are more common in children with motor and developmental disorders and are occasionally presented as potentially epileptic events if they are repetitive or if the child has epileptic seizures at other times. Repetitive sleep starts can cause recurrent wakening. They may be mistaken for myoclonic seizures or epileptic spasms.
Hypnic jerk
Sleep start jerks
hypnogogic jerk
http://purl.bioontology.org/ontology/SNOMEDCT/443438009
true
true
true
Sleep starts or hypnic or hypnogogic jerks are normal phenomena experienced by the majority of children and adults at sleep onset, to variable degrees. They are more common in children with motor and developmental disorders and are occasionally presented as potentially epileptic events if they are repetitive or if the child has epileptic seizures at other times. Repetitive sleep starts can cause recurrent wakening. They may be mistaken for myoclonic seizures or epileptic spasms.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#hypnogogic
Seizures due to Hypnogogic hallucination. Hypnogogic (or hypnopompic) hallucinations also occur while falling asleep (or waking up). Cataplexy, hypnagogic hallucinations, and sleep paralysis can occur in the absence of narcolepsy, and in these cases are more likely to be mistaken for epilepsy.
hypnogogic seizure
http://www.case.edu/EpSO.owl#HypnogogicSeizure
http://www.columbianeurology.org/sites/default/files/nocturnal_seizures_SemNeurol_2004.pdf
Modified definition
https://www.ncbi.nlm.nih.gov/pubmed/21030341
Ictal awakening is probably a common and well-described relationship between epilepsy and sleep. Arousal from sleep as the only, or at least main, manifestation of some epileptic seizures. And this phenomenon is described as hypnopompic (arousing) seizures.
hypnopompic seizure
http://www.case.edu/EpSO.owl#HypnopompicSeizure
Modified definition
Hypothalamic hamartomas may be associated with gelastic seizures, focal seizures, and a generalized epileptic encephalopathy, with severe seizures and cognitive and behavior decline.
Hypothalamic hamartoma
hypothalamic epilepsy
http://www.case.edu/EpSO.owl#HypothalamicEpilepsy
Hypothalamic hamartomas may be associated with gelastic seizures, focal seizures, and a generalized epileptic encephalopathy, with severe seizures and cognitive and behavior decline.
https://www.ncbi.nlm.nih.gov/pubmed/12823582
In this model of global hypoxia, rat pups are exposed to graded global hypoxia (7%–4% oxygen) for 15 minutes in a gas chamber.
hypoxia model
true
In this model of global hypoxia, rat pups are exposed to graded global hypoxia (7%–4% oxygen) for 15 minutes in a gas chamber.
https://www.ncbi.nlm.nih.gov/pubmed/25228809
Hypoxic-ischemic structural brain abnormalities include loss of cerebral volume and scarring ('gliosis'). Acute seizures typically occur, maximal in the first 24 hours of the hypoxic-ischemic event. If epilepsy occurs following hypoxic-ischemic brain injury, there is typically a latent period after the hypoxic-ischemic event, followed by emergence of seizures.
hypoxic-ischemic
true
Hypoxic-ischemic structural brain abnormalities include loss of cerebral volume and scarring ('gliosis'). Acute seizures typically occur, maximal in the first 24 hours of the hypoxic-ischemic event. If epilepsy occurs following hypoxic-ischemic brain injury, there is typically a latent period after the hypoxic-ischemic event, followed by emergence of seizures.
https://www.epilepsydiagnosis.org/aetiology/hypoxic-ischemic-overview.html
Hypoxic-ischemic brain injury can occur due to many causes and at any age in life. It can cause acute seizures at the time of the injury, as well as epilepsy as a longer-term complication.
Hypoxic Ischemic Injury
hypoxic and ischemic injury
http://www.case.edu/EpSO.owl#HypoxicIschemicInjury
true
Hypoxic-ischemic brain injury can occur due to many causes and at any age in life. It can cause acute seizures at the time of the injury, as well as epilepsy as a longer-term complication.
https://www.epilepsydiagnosis.org/aetiology/hypoxic-ischemic-injury-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/26038597
Seizure-related cardiac arrhythmias are frequently reported and have been implicated as potential pathomechanisms of Sudden Unexpected Death in Epilepsy (SUDEP). Sinus tachycardia is the most common cardiac consequence of epileptic seizures and may occur in up to 80% of seizures. It may be associated with palpitations, but not with clinical signs such as syncope. Of all clinically relevant ictal arrhythmias, ictal asystole has gained much attention as it may cause syncope and subsequent falls, fractures and traffic accidents.
Seizure-related cardiac arrhythmias
ictal or post-ictal cardiac abnormality
Modified definition
true
Seizure-related respiratory dysfunction may play a critical role in the pathophysiology of sudden unexpected death in epilepsy (SUDEP). In the majority of observed SUDEP cases, there is some evidence of breathing difficulty prior to death. In addition, simultaneous recording of respiratory function in patients undergoing video-EEG monitoring has shown that abnormalities, such as hypoxemia, apnea, and hypercarbia, are commonly seen following seizures
Seizure-related respiratory dysfunction
ictal or post-ictal respiratory abnormality
true
Seizure-related respiratory dysfunction may play a critical role in the pathophysiology of sudden unexpected death in epilepsy (SUDEP). In the majority of observed SUDEP cases, there is some evidence of breathing difficulty prior to death. In addition, simultaneous recording of respiratory function in patients undergoing video-EEG monitoring has shown that abnormalities, such as hypoxemia, apnea, and hypercarbia, are commonly seen following seizures
https://www.epilepsy.com/article/2015/9/breathing-problems-and-sudep
https://www.ncbi.nlm.nih.gov/pubmed/26304794
EEG pattern of an ictal event
ictal pattern
http://www.case.edu/EpSO.owl#IctalPattern
true
EEG pattern of an ictal event
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375749/
Seizures and epilepsy are common sequelae of acute brain insults such as stroke, traumatic brain injury, and central nervous system infections. Early, or acute symptomatic, seizures occur at the time of the brain insult and may be a marker of severity of injury.
immediate and early post cerebral insult seizure
true
Seizures and epilepsy are common sequelae of acute brain insults such as stroke, traumatic brain injury, and central nervous system infections. Early, or acute symptomatic, seizures occur at the time of the brain insult and may be a marker of severity of injury.
https://www.ncbi.nlm.nih.gov/pubmed/12428028
Posttraumatic seizures are commonly derived into three classes: ‘immediate seizures’, ‘early seizures’, and ‘late seizures’. Immediate seizures refer to those that happen at or minutes after impact; seizures that occur one week after head injury are called early seizures, and late posttraumatic seizures are defined as those occurring >1 week after injury.
immediate and early post traumatic seizure
true
Posttraumatic seizures are commonly derived into three classes: ‘immediate seizures’, ‘early seizures’, and ‘late seizures’. Immediate seizures refer to those that happen at or minutes after impact; seizures that occur one week after head injury are called early seizures, and late posttraumatic seizures are defined as those occurring >1 week after injury.
https://www.ncbi.nlm.nih.gov/pubmed/26015908
Immune epilepsies are conceptualized as having a distinct immune-mediated etiology with evidence of central nervous system inflammation, that has been demonstrated to be associated with a substantially increased risk of developing epilepsy.
immune etiology
true
Immune epilepsies are conceptualized as having a distinct immune-mediated etiology with evidence of central nervous system inflammation, that has been demonstrated to be associated with a substantially increased risk of developing epilepsy.
https://www.epilepsydiagnosis.org/aetiology/immune-groupoverview.html
https://www.ncbi.nlm.nih.gov/pubmed/22995680
In silico modelling, in which computer models are developed to model a pharmacologic or physiologic process, is a logical extension of controlled in vitro experimentation.
in silico model
true
In silico modelling, in which computer models are developed to model a pharmacologic or physiologic process, is a logical extension of controlled in vitro experimentation.
https://www.ncbi.nlm.nih.gov/pubmed/22099916
Like, suitable for, or characteristic of an infant; babyish; childish or childlike; immature
infantile
infantile behavior
true
Like, suitable for, or characteristic of an infant; babyish; childish or childlike; immature
https://www.yourdictionary.com/infantile
https://www.ncbi.nlm.nih.gov/pubmed/26423537
infectious cause of seizure
true
Immune epilepsies are conceptualized as having a distinct immune-mediated etiology with evidence of central nervous system inflammation, that has been demonstrated to be associated with a substantially increased risk of developing epilepsy.
infectious etiology
true
Immune epilepsies are conceptualized as having a distinct immune-mediated etiology with evidence of central nervous system inflammation, that has been demonstrated to be associated with a substantially increased risk of developing epilepsy.
https://www.epilepsydiagnosis.org/aetiology/immune-groupoverview.html
Inhibitory motor seizures are ictal motor epileptic events of central paresis usually unilateral mono- or hemiparesis while consciousness is intact. They are reported under a number of different names, which may be confusing. Inhibitory motor seizures are contralateral to the epileptogenic region, and they are usually associated with other subjective or objective manifestations (predominantly sensory or motor clonic), which mainly precede but may also occur concurrently with the paresis.
inhibitory motor seizure
true
Inhibitory motor seizures are ictal motor epileptic events of central paresis usually unilateral mono- or hemiparesis while consciousness is intact. They are reported under a number of different names, which may be confusing. Inhibitory motor seizures are contralateral to the epileptogenic region, and they are usually associated with other subjective or objective manifestations (predominantly sensory or motor clonic), which mainly precede but may also occur concurrently with the paresis.
http://www.medlink.com/article/inhibitory_motor_seizures
Insular epilepsy can mimic features of frontal, parietal, or temporal seizures. Insular epilepsy should be considered when a combination of somatosensory, visceral, and motor symptoms is observed early in a seizure.
insular epilepsy
http://www.case.edu/EpSO.owl#InsularEpilepsy
Insular epilepsy can mimic features of frontal, parietal, or temporal seizures. Insular epilepsy should be considered when a combination of somatosensory, visceral, and motor symptoms is observed early in a seizure.
https://www.ncbi.nlm.nih.gov/pubmed/28386920
https://www.ncbi.nlm.nih.gov/pubmed/15329073
Seizures that arise from any part of the insula and frequently spread to adjacent medial opercular regions which share some functional commonalities with the insula. The best example is the painful seizure, where the ictal discharges often involve the posterior insula as well as the medial parietal operculum and such functional commonality is well supported by the neurophysiological evidence. Therefore, it is often more accurate to describe these as insulo-opercular seizures, rather than strictly insular seizures.
insular lobe seizure
true
Seizures that arise from any part of the insula and frequently spread to adjacent medial opercular regions which share some functional commonalities with the insula. The best example is the painful seizure, where the ictal discharges often involve the posterior insula as well as the medial parietal operculum and such functional commonality is well supported by the neurophysiological evidence. Therefore, it is often more accurate to describe these as insulo-opercular seizures, rather than strictly insular seizures.
https://www.sciencedirect.com/science/article/pii/S0035378718308117
https://www.ncbi.nlm.nih.gov/pubmed/20161538
A distinct syndrome of interictal behavior changes occurs in many patients with temporal lobe epilepsy. These changes include alterations in sexual behavior, religiosity, and a tendency toward extensive, and in some cases compulsive, writing and drawing.
Interictal Behavior Syndrome
interictal behavior disorder
true
true
A distinct syndrome of interictal behavior changes occurs in many patients with temporal lobe epilepsy. These changes include alterations in sexual behavior, religiosity, and a tendency toward extensive, and in some cases compulsive, writing and drawing.
https://jamanetwork.com/journals/jamapsychiatry/article-abstract/491470
https://www.ncbi.nlm.nih.gov/pubmed/20161538
Interictal dysphoric disorder is a proposed epilepsy-specific psychiatric condition characterized by a conglomerate of symptoms such as depression, irritability, euphoria, and anxiety.
interictal dysphoric disorder
true
Interictal dysphoric disorder is a proposed epilepsy-specific psychiatric condition characterized by a conglomerate of symptoms such as depression, irritability, euphoria, and anxiety.
https://www.ncbi.nlm.nih.gov/pubmed/29414382
A slow activity that occurs intermittently and is not caused by drowsiness. Intermittent slow can be irregular or rhythmical.
intermittent slow activity
true
A slow activity that occurs intermittently and is not caused by drowsiness. Intermittent slow can be irregular or rhythmical.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Intermittent_Slow_Activity&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/28637636
intracranial infections progress rapidly and result in significant morbidity and mortality if appropriate therapies are not initiated promptly. Clinical presentations of intracranial infection vary significantly. Common manifestations include altered mental status, seizures, as well as more subtle focal deficits, such as cranial nerve palsies
intracranial infection
true
intracranial infections progress rapidly and result in significant morbidity and mortality if appropriate therapies are not initiated promptly. Clinical presentations of intracranial infection vary significantly. Common manifestations include altered mental status, seizures, as well as more subtle focal deficits, such as cranial nerve palsies
https://www.ncbi.nlm.nih.gov/pubmed/17924219
Invasive evaluations play important roles in identifying epileptogenic zones and functional areas in patients with intractable focal epilepsy.
invasive preoperative exploration
true
Invasive evaluations play important roles in identifying epileptogenic zones and functional areas in patients with intractable focal epilepsy.
https://www.ncbi.nlm.nih.gov/pubmed/26948700
https://www.ncbi.nlm.nih.gov/pubmed/12744361
Subdural grid recordings provide more accurate delineation of regions of eloquent cortex and epileptogenic foci than do noninvasive strategies or awake craniotomy. The information derived from chronic subdural recordings can be used to plan an aggressive approach to the epileptogenic focus to maximize favorable outcomes
invasive subdural grid monitoring
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/6149233
Jitteriness is common in the newborn period, commonly occurring in an otherwise well-appearing infant on the first day of life as a transient, self-limiting finding. Medical causes of jitteriness may include hypocalcemia and neonatal abstinence syndrome. Jitteriness can be distinguished from epileptic seizures as it can be increased when the infant is unwrapped, stimulated, startled or crying, but suppresses when the infant is wrapped or the affected limb is held gently.
jitteriness
true
Jitteriness is common in the newborn period, commonly occurring in an otherwise well-appearing infant on the first day of life as a transient, self-limiting finding. Medical causes of jitteriness may include hypocalcemia and neonatal abstinence syndrome. Jitteriness can be distinguished from epileptic seizures as it can be increased when the infant is unwrapped, stimulated, startled or crying, but suppresses when the infant is wrapped or the affected limb is held gently.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#misc
Kainic-acid-induced seizures are associated with massive increases in parasympathetic (vagus nerves) and sympathetic (cervical sympathetic ganglion, renal sympathetic nerve, splanchnic nerve, cardiac sympathetic nerve) activity.
kainic acid-induced seizure
true
Kainic-acid-induced seizures are associated with massive increases in parasympathetic (vagus nerves) and sympathetic (cervical sympathetic ganglion, renal sympathetic nerve, splanchnic nerve, cardiac sympathetic nerve) activity.
https://www.sciencedirect.com/topics/medicine-and-dentistry/kainic-acid-induced-seizure
https://www.ncbi.nlm.nih.gov/pubmed/25228809
In this model, kainic acid, an L-glutamate analog, the systemic or intracerebral administration of which causes neuronal depolarization and seizures, preferentially targeting the hippocampus.
kainic acid model
Modified definition
true
Lambda waves refer to the sharp, transient waves with a duration of 160 to 250 milliseconds, occuring when an individual's eye is open, coming from occipital regions bilaterally when the individual's eyes are focused on an illuminated or patterned visual field.
lambda wave
http://www.case.edu/EpSO.owl#LambdaWave
https://emedicine.medscape.com/article/1139332-overview#a1
Lambda waves refer to the sharp, transient waves with a duration of 160 to 250 milliseconds, occuring when an individual's eye is open, coming from occipital regions bilaterally when the individual's eyes are focused on an illuminated or patterned visual field.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23LambdaWave&jump_to_nav=true
The LTG-resistant kindled model is one of the most recently and widely investigated for the kindling process and drug resistance. The kindling process depicts epileptogenesis that could be achieved from stimulation either by a low-intensity electric current at the amygdala or by the administration of a subconvulsive dose of
a CNS stimulant such as pentylenetetrazole (PTZ), picrotoxin or strychnine once daily or every other day over a period of time to induce a permanent alteration in the epileptogenic sensitivity of the brain
LTG-resistant kindled model
lamotrigine resistant kindled model
true
The LTG-resistant kindled model is one of the most recently and widely investigated for the kindling process and drug resistance. The kindling process depicts epileptogenesis that could be achieved from stimulation either by a low-intensity electric current at the amygdala or by the administration of a subconvulsive dose of
a CNS stimulant such as pentylenetetrazole (PTZ), picrotoxin or strychnine once daily or every other day over a period of time to induce a permanent alteration in the epileptogenic sensitivity of the brain
https://www.ncbi.nlm.nih.gov/pubmed/24674593
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3420488/
The use of functional magnetic resonance imaging (fMRI), which is a non-invasive mapping method, to investigate patients’ language function.
language fMRI
language functional magnetic resonance imaging
https://www.frontiersin.org/articles/10.3389/fnhum.2019.00183/full
Modified definition
true
true
language regression due to other etiology
https://www.epilepsydiagnosis.org/syndrome/lks-diffdiagnoses.html
true
Seizures manifest with visual hallucinations and/or blindness, they are frequent, mainly diurnal lasting from seconds to less than three minutes. They may progress to other seizure manifestations, mainly hemiconvulsions. Loss of consciousness may occur with or without convulsions. A postictal headache occurs in 30% of patients. Mean age at onset is 7–8 years, and prognosis is usually good with remission often occurring within two to three years.
Late onset childhood occipital epilepsy (Gastaut type)
late-onset benign occipital seizure
true
Seizures manifest with visual hallucinations and/or blindness, they are frequent, mainly diurnal lasting from seconds to less than three minutes. They may progress to other seizure manifestations, mainly hemiconvulsions. Loss of consciousness may occur with or without convulsions. A postictal headache occurs in 30% of patients. Mean age at onset is 7–8 years, and prognosis is usually good with remission often occurring within two to three years.
https://adc.bmj.com/content/78/1/3
A seizure more than seven days after a brain injury is called a late post-traumatic seizure. About 80% of people who have a late post-traumatic seizure will have another seizure (epilepsy).
late post-traumatic seizure
true
A seizure more than seven days after a brain injury is called a late post-traumatic seizure. About 80% of people who have a late post-traumatic seizure will have another seizure (epilepsy).
https://msktc.org/tbi/factsheets/seizures-after-traumatic-brain-injury
https://www.ncbi.nlm.nih.gov/pubmed/19286474
lateral frontal epilepsy
http://www.case.edu/EpSO.owl#LateralFrontalEpilepsy
https://www.ncbi.nlm.nih.gov/pubmed/15788545
lateral occipital epilepsy
http://www.case.edu/EpSO.owl#LateralOccipitalEpilepsy
https://www.ncbi.nlm.nih.gov/pubmed/23872083
lateral parietal epilepsy
http://www.case.edu/EpSO.owl#LateralParietalEpilepsy
Anaplastic astrocytomas developed in the left frontal lobe of the cerebrum. A tumor in the frontal lobe may cause memory problems, changes in personality and mood, and paralysis (hemiplegia) on the side of the body opposite of the tumor.
left frontal astrocytoma
http://www.case.edu/EpSO.owl#LeftFrontalAstrocytoma
https://rarediseases.org/rare-diseases/anaplastic-astrocytoma/
Modified definition
https://www.ncbi.nlm.nih.gov/pubmed/26317672
left hemisphere tumor resection
http://www.case.edu/EpSO.owl#LeftHemisphereTumorResection
https://www.ncbi.nlm.nih.gov/pubmed/21896690
left mesial temporal lesion
http://www.case.edu/EpSO.owl#LeftMesialTemporalLesion
Lethargic (lh) mice are spontaneous mutant mice presenting a loss of β4 subunit of voltage-gated calcium channels (VGCC) due to a mutation in the gene encoding for β4, Cacnb4. These lh mice are characterized by a complex phenotype with notably severe neurobehavioral defects.
lethargic mouse
true
Lethargic (lh) mice are spontaneous mutant mice presenting a loss of β4 subunit of voltage-gated calcium channels (VGCC) due to a mutation in the gene encoding for β4, Cacnb4. These lh mice are characterized by a complex phenotype with notably severe neurobehavioral defects.
http://www.novapublishers.org/catalog/product_info.php?products_id=33768
https://www.ncbi.nlm.nih.gov/pubmed/31846897
limbic epilepsy
true
true
https://www.ncbi.nlm.nih.gov/pubmed/25667835
displaying or expressing enjoyment or pleasure, esp at the taste of food or drink
lip smacking
true
displaying or expressing enjoyment or pleasure, esp at the taste of food or drink
https://www.collinsdictionary.com/dictionary/english/lip-smacking
https://www.ncbi.nlm.nih.gov/pubmed/1324090
In this model, lithium is used to potentiate the ability of pilocarpine to induce status epilepticus in rats. Lithium followed by pilocarpine, induced hyperactivity, tremor, loss of postural control and scratching but no electrographic seizures in rats.
lithium-pilocarpine model
Modified definition
true
loss of awareness
https://www.epilepsy.com/learn/types-seizures/focal-onset-impaired-awareness-seizures-aka-complex-partial-seizures
true
true
Low or zero-Mg2+ is a commonly used in vitro model of epileptiform activity in entorrhinal-hippocampal slices used to determine the effect of drugs on seizure activity and mechanisms of antiepileptiform activity.
low magnesium slice model
true
Low or zero-Mg2+ is a commonly used in vitro model of epileptiform activity in entorrhinal-hippocampal slices used to determine the effect of drugs on seizure activity and mechanisms of antiepileptiform activity.
https://www.ncbi.nlm.nih.gov/pubmed/24013377
Macroscale models attempt to model the averaged activity an ensemble of neural populations, involving multiple brain regions at the expense of the biophysical realism of the underlying networks.
macro-scale model
true
Macroscale models attempt to model the averaged activity an ensemble of neural populations, involving multiple brain regions at the expense of the biophysical realism of the underlying networks.
https://www.ncbi.nlm.nih.gov/pubmed/22995680
Malaria-associated seizures (MAS) can occur within two settings, either as isolated seizures within the setting of fever or in the setting of cerebral malaria. In cerebral malaria, other severe neurological symptoms such as coma and cerebral edema are observed, which are probably due to impaired capillary perfusion. In cerebral malaria, seizures can also occur without fever.
malaria-related seizure
true
Malaria-associated seizures (MAS) can occur within two settings, either as isolated seizures within the setting of fever or in the setting of cerebral malaria. In cerebral malaria, other severe neurological symptoms such as coma and cerebral edema are observed, which are probably due to impaired capillary perfusion. In cerebral malaria, seizures can also occur without fever.
http://epilepsygenetics.net/2013/08/19/malaria-seizures-and-genes/
https://www.ncbi.nlm.nih.gov/pubmed/23027093
Mesial frontal lobe epilepsies are epilepsies arising from the anterior cingulate gyrus and those of the supplementary sensorimotor area.
mesial frontal epilepsy
http://www.case.edu/EpSO.owl#MesialFrontalEpilepsy
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/15788545
mesial occipital epilepsy
http://www.case.edu/EpSO.owl#MesialOccipitalEpilepsy
https://www.ncbi.nlm.nih.gov/pubmed/23872083
mesial parietal epilepsy
http://www.case.edu/EpSO.owl#MesialParietalEpilepsy
true
https://www.ncbi.nlm.nih.gov/pubmed/23027091
mesial temporal lobe epilepsy by specific etiology
true
true
Seizures that arise in the mesial temporal lobe may be characterized by distinctive seizure onset features such as an autonomic seizure with rising epigastric sensation or abdominal discomfort, or cognitive seizure with deja vu/jamais vu, or emotional seizure with fear. Unpleasant olfactory and gustatory sensory seizures may also occur. These focal seizure types may occur in isolation or may be followed by the onset of behavioral arrest with slowly progressive impairment of awareness and oral (chewing, lip-smacking, swallowing, tongue movements) and manual automatisms.
mesial temporal lobe seizure including hippocampus
true
Seizures that arise in the mesial temporal lobe may be characterized by distinctive seizure onset features such as an autonomic seizure with rising epigastric sensation or abdominal discomfort, or cognitive seizure with deja vu/jamais vu, or emotional seizure with fear. Unpleasant olfactory and gustatory sensory seizures may also occur. These focal seizure types may occur in isolation or may be followed by the onset of behavioral arrest with slowly progressive impairment of awareness and oral (chewing, lip-smacking, swallowing, tongue movements) and manual automatisms.
https://www.epilepsydiagnosis.org/seizure/temporal-overview.html
Metabolic epilepsies are conceptualized as having a distinct metabolic abnormality that has been demonstrated to be associated with a substantially increased risk of developing epilepsy in appropriately designed studies.
Metabolic Cause
metabolic etiology
http://www.case.edu/EpSO.owl#MetabolicCause
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html
true
Metabolic epilepsies are conceptualized as having a distinct metabolic abnormality that has been demonstrated to be associated with a substantially increased risk of developing epilepsy in appropriately designed studies.
https://www.epilepsydiagnosis.org/aetiology/metabolic-groupoverview.html
Metabolic imaging is a field of molecular imaging that focuses and targets changes in metabolic pathways for the evaluation of different clinical conditions
metabolic imaging
true
Metabolic imaging is a field of molecular imaging that focuses and targets changes in metabolic pathways for the evaluation of different clinical conditions
https://www.ncbi.nlm.nih.gov/pubmed/26687855
Metaldehyde-induced seizures.
metaldehyde-induced seizure
true
Metaldehyde-induced seizures.
https://www.ncbi.nlm.nih.gov/pubmed/7143555
Metallic taste perceived in the oral cavity independent of any external stimuli.
metallic taste hallucination
true
Metallic taste perceived in the oral cavity independent of any external stimuli.
https://www.sciencedirect.com/topics/neuroscience/gustatory-hallucination
https://www.ncbi.nlm.nih.gov/pubmed/6133913
Animal model in which generalized seizures are induced by methoxypyridoxine.
methoxypyridoxine model
Modified definition
true
Micro-scale models are typically confined to neuronal networks within a given brain region, such as the hippocampus and aim to preserve the biophysical reality of neuronal dynamics.
micro-scale model
true
Micro-scale models are typically confined to neuronal networks within a given brain region, such as the hippocampus and aim to preserve the biophysical reality of neuronal dynamics.
https://www.ncbi.nlm.nih.gov/pubmed/22995680
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Midline theta rhythm occurs as a focal rhythm over the midline region and usually is most prominant in the central vertex lead.
midline theta rhythm
http://www.case.edu/EpSO.owl#MidlineThetaRhythm
true
Midline theta rhythm occurs as a focal rhythm over the midline region and usually is most prominant in the central vertex lead.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23MidlineThetaRhythm&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/books/NBK98193/
Migraine associated with other illnesses.
migraine associated disorder
https://americanmigrainefoundation.org/resource-library/migraine-and-common-co-morbidities/
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#migraine
Modified definition
true
true
https://www.ncbi.nlm.nih.gov/pubmed/24632481
The Mini-international neuropsychiatric interview is a short structured clinical interview which enables researchers to make diagnoses of psychiatric disorders according to DSM-IV (Diagnostic and Statistical Manual of Mental Disorders) or ICD-10. The administration time of the interview is approximately 15 minutes and was designed for epidemiological studies and multicenter clinical trials.
mini-international neuropsychiatric interview
true
The Mini-international neuropsychiatric interview is a short structured clinical interview which enables researchers to make diagnoses of psychiatric disorders according to DSM-IV (Diagnostic and Statistical Manual of Mental Disorders) or ICD-10. The administration time of the interview is approximately 15 minutes and was designed for epidemiological studies and multicenter clinical trials.
http://www.ebi.ac.uk/efo/EFO_0004786
Mixed spasms are the most common type, consisting of flexion of the neck and arms and extension of the legs or of flexion of the legs and extension of the arms.
mixed spasm
true
Mixed spasms are the most common type, consisting of flexion of the neck and arms and extension of the legs or of flexion of the legs and extension of the arms.
https://emedicine.medscape.com/article/1176431-clinical
https://www.ncbi.nlm.nih.gov/pubmed/20627816
To make a long, low sound of pain, suffering, or another strong emotion.
moan
true
true
To make a long, low sound of pain, suffering, or another strong emotion.
https://dictionary.cambridge.org/dictionary/english/moan
https://www.ncbi.nlm.nih.gov/pubmed/1915173
Distinct EEG activity appearing to be composed of one dominant activity.
monomorphic wave
https://www.medicine.mcgill.ca/physio/vlab/biomed_signals/eeg_n.htm
Modified definition
true
Mu rhythm refers to central rhythm of alpha activity frequency (usually 8 to 10 hz) in which the individual waves have an arch like shape.
mu rhythm
http://www.case.edu/EpSO.owl#MuRhythm
https://emedicine.medscape.com/article/1139332-overview#a1
Mu rhythm refers to central rhythm of alpha activity frequency (usually 8 to 10 hz) in which the individual waves have an arch like shape.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23MuRhythm&jump_to_nav=true
Multifocal epileptic activity is an unfavourable feature of a number of epileptic syndromes (Lennox-Gastaut syndrome, West syndrome, severe focal epilepsies) which suggests an overall vulnerability of the brain to pathological synchronization.
multifocal epilepsy
http://www.case.edu/EpSO.owl#MultiFocalEpilepsy
true
https://www.ncbi.nlm.nih.gov/pubmed/9757434
Multilobar resectionis a surgical option available for the treatment of medically intractable seizures arising from a diffuse area of epileptogenicity that remains unilateral but extends beyond one lobe.
multilobar resection
https://pdfs.semanticscholar.org/1758/8f2f2affb26e5ac437702e13af64499fd522.pdf
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/8194189
The multiple sleep latency test (MSLT) tests for excessive daytime sleepiness by measuring how quickly you fall asleep in a quiet environment during the day.
Daytime nap study
multiple sleep latency test
true
The multiple sleep latency test (MSLT) tests for excessive daytime sleepiness by measuring how quickly you fall asleep in a quiet environment during the day.
http://sleepeducation.org/disease-detection/multiple-sleep-latency-test/overview-and-facts
Multiple subpial transection (MST) is a novel technique in surgery for epilepsy, employed in patients where some or all of the epileptogenic zone cannot be resected because it lies in a vital cortical area.
multiple subpial transection
https://www.webmd.com/epilepsy/guide/multiple-subpial-transection-mst
true
true
Multiple subpial transection (MST) is a novel technique in surgery for epilepsy, employed in patients where some or all of the epileptogenic zone cannot be resected because it lies in a vital cortical area.
https://www.ncbi.nlm.nih.gov/pubmed/7897419
Musical hallucination (MH) is the experience of hearing music when none is being played.
music hallucination
true
Musical hallucination (MH) is the experience of hearing music when none is being played.
https://www.tinnitus.org.uk/musical-hallucination
music tone
true
Myoclonic absence status epilepticus consists of proximal, predominantly upper extremity myoclonic jerks corresponding with 3 Hz spike-wave discharges in the EEG. It can last hours or even days and is usually resistant to therapy.
myoclonic absence status epilepticus
true
Myoclonic absence status epilepticus consists of proximal, predominantly upper extremity myoclonic jerks corresponding with 3 Hz spike-wave discharges in the EEG. It can last hours or even days and is usually resistant to therapy.
https://www.medlink.com/article/absence_status_epilepticus
Seizure manifesting motor arrest, that is, negative motor seizure (NMS), is a rare epileptic condition in which only inability to conduct voluntary movements or praxis is produced, although consciousness is preserved. The negative motor area (NMA) seems to be responsible, but its generator mechanism has not yet been clarified.
negative motor seizure
true
Seizure manifesting motor arrest, that is, negative motor seizure (NMS), is a rare epileptic condition in which only inability to conduct voluntary movements or praxis is produced, although consciousness is preserved. The negative motor area (NMA) seems to be responsible, but its generator mechanism has not yet been clarified.
https://www.ncbi.nlm.nih.gov/pubmed/19453721
https://www.ncbi.nlm.nih.gov/pubmed/12908748
negative visual illusion
true
true
Neocortical epilepsy is a type of seizure disorder that can be either partial (focal) or generalized, in which the seizures originate in the neocortex, part of the external surface layer of the brain. Neocortical epilepsy differs from other kinds of epilepsy because often there is no clearly defined area from which the seizures originate.
neocortical epilepsy
true
Neocortical epilepsy is a type of seizure disorder that can be either partial (focal) or generalized, in which the seizures originate in the neocortex, part of the external surface layer of the brain. Neocortical epilepsy differs from other kinds of epilepsy because often there is no clearly defined area from which the seizures originate.
https://www.columbianeurosurgery.org/conditions/neocortical-epilepsy/
https://www.ncbi.nlm.nih.gov/pubmed/25228809
In this model neonatal animals were exposed to graded global hypoxia to develop spontaneous seizures later in life, as well as mossy fiber sprouting and long-term behavioral alterations, including social deficits, memory impairments, and aggressiveness. Despite the lack of early neuronal injury, hypoxia-induced seizures promote hyperexcitability immediately after seizure recovery, facilitating long-term potentiation induction and generating longer ADs. Increased excitability persists in the adult hippocampus, suggesting that the epileptogenic effects of hypoxia are mediated by permanent effects on excitability and plasticity within hippocampal networks.
neonatal hypoxia model
Modified definition
true
The Neurological Disorders Depression Inventory for Epilepsy (NDDI-E) was developed and proven efficient for the rapid detection of a major depressive episode in people with epilepsy.
neurological disorders depression inventory for epilepsy
true
The Neurological Disorders Depression Inventory for Epilepsy (NDDI-E) was developed and proven efficient for the rapid detection of a major depressive episode in people with epilepsy.
https://www.ncbi.nlm.nih.gov/pubmed/26900772
Neurological causes of syncope include Chiari malformation, hyperekplexia (startle disease) and paroxysmal extreme pain disorder. With a Chiari malformation, coughing and straining on the toilet may trigger a transient loss of consciousness similar to a syncope. The exact mechanism is uncertain but increased downward herniation of the brain may compress the vertebro-basilar arteries and cranial nerves IX and X. A history of chronic headache and sensory symptoms associated with the collapse should lead to consideration of neuroimaging as decompression surgery can be curative.
neurological syncope
true
Neurological causes of syncope include Chiari malformation, hyperekplexia (startle disease) and paroxysmal extreme pain disorder. With a Chiari malformation, coughing and straining on the toilet may trigger a transient loss of consciousness similar to a syncope. The exact mechanism is uncertain but increased downward herniation of the brain may compress the vertebro-basilar arteries and cranial nerves IX and X. A history of chronic headache and sensory symptoms associated with the collapse should lead to consideration of neuroimaging as decompression surgery can be curative.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#neurosyncope
https://www.ncbi.nlm.nih.gov/pubmed/22995680
Non-deterministic models comes under the category of computaional model that aims to capture the inherent variability of the recorded brain activity.
non-deterministic model
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/23531441
https://www.ncbi.nlm.nih.gov/pubmed/2369876
Non-epileptic head drops can occur in infants and may mimic epileptic spasms or atonic seizures. Infants typically experience frequent (more than a hundred) events per day, the head drop can be intense, may occur in a series (resulting in head bobbing) and may be accompanied by crying. The fall of the head (flexion of the neck) and rise of the head occur at the same velocity unlike in an epileptic seizure where the fall of the head is typically more rapid than the rise of the head. Non-epileptic head drops begin between age 3 - 6 months, and resolve by 12 months. Infants develop normally.
non-epileptic head drop
true
true
Non-epileptic head drops can occur in infants and may mimic epileptic spasms or atonic seizures. Infants typically experience frequent (more than a hundred) events per day, the head drop can be intense, may occur in a series (resulting in head bobbing) and may be accompanied by crying. The fall of the head (flexion of the neck) and rise of the head occur at the same velocity unlike in an epileptic seizure where the fall of the head is typically more rapid than the rise of the head. Non-epileptic head drops begin between age 3 - 6 months, and resolve by 12 months. Infants develop normally.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#head-drops
Non-epileptic seizures (previously known as non-epileptic attacks, psychogenic seizures and pseudoseizures) resemble epileptic seizures, but have no electrophysiological correlate or clinical evidence for epilepsy. The etiology of non-epileptic seizures is heterogeneous, with different predisposing, precipitating and promoting factors in different affected individuals. Psychogenic factors may promote the emergence of non-epileptic seizures, but psychogenic factors may not be able to be identified in all cases. The seizure-like event may include movement or impaired awareness, and can imitate focal motor seizures or focal impaired awareness seizures. Motor features that distinguish these attacks from seizures include a prominence of proximal or truncal movements, waxing and waning pattern of movements, variable rate and direction of jerking, horizontal movements of the head, crying during or after the event, and eye closure with resistance to passive eye opening. Diagnosing non-epileptic seizures is important because of the potential serious side effects of anti-seizure medications and associated procedures for treating epilepsy such as intubation and ventilation. The failure to recognize the psychological factors contributing to these events also delays implementation of appropriate psychological treatment. Video EEG monitoring and concomitant psychological evaluation is typically required to establish the diagnosis and the treatment plan.
non-epileptic seizure
true
Non-epileptic seizures (previously known as non-epileptic attacks, psychogenic seizures and pseudoseizures) resemble epileptic seizures, but have no electrophysiological correlate or clinical evidence for epilepsy. The etiology of non-epileptic seizures is heterogeneous, with different predisposing, precipitating and promoting factors in different affected individuals. Psychogenic factors may promote the emergence of non-epileptic seizures, but psychogenic factors may not be able to be identified in all cases. The seizure-like event may include movement or impaired awareness, and can imitate focal motor seizures or focal impaired awareness seizures. Motor features that distinguish these attacks from seizures include a prominence of proximal or truncal movements, waxing and waning pattern of movements, variable rate and direction of jerking, horizontal movements of the head, crying during or after the event, and eye closure with resistance to passive eye opening. Diagnosing non-epileptic seizures is important because of the potential serious side effects of anti-seizure medications and associated procedures for treating epilepsy such as intubation and ventilation. The failure to recognize the psychological factors contributing to these events also delays implementation of appropriate psychological treatment. Video EEG monitoring and concomitant psychological evaluation is typically required to establish the diagnosis and the treatment plan.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#psychogenic
https://www.ncbi.nlm.nih.gov/pubmed/9109891
https://www.ncbi.nlm.nih.gov/pubmed/9832214
Non-invasive method to assess the hemispheric dominance for language.
non-invasive assessment of language dominance
Modified definition
true
Non-invasive localization of focal epileptogenic discharges in patients considered for surgical treatment.
non-invasive epileptic focus localization
true
Non-invasive localization of focal epileptogenic discharges in patients considered for surgical treatment.
https://www.ncbi.nlm.nih.gov/pubmed/9741750
https://www.ncbi.nlm.nih.gov/pubmed/7631075
non-invasive multichannel magnetoencephalography
true
https://www.ncbi.nlm.nih.gov/pubmed/27627857
Non-invasive pre-surgical evaluation.
non-invasive preoperative evaluation
Modified definition
true
Non-pharmacological treatment of epilepsy includes surgery, vagal nerve stimulation, ketogenic diet, and other alternative/complementary therapies. Alternative therapies include techniques such as yoga, acupuncture, chiropractic, massage therapy, EEG biofeedback, aromatherapy, homeopathy, herbal remedies (traditional Chinese medicine), etc. Most people with epilepsy need to take antiepileptic medication to control their seizures and alternative therapies are more often complementary.
non-pharmacological treatment of epilepsy
true
Non-pharmacological treatment of epilepsy includes surgery, vagal nerve stimulation, ketogenic diet, and other alternative/complementary therapies. Alternative therapies include techniques such as yoga, acupuncture, chiropractic, massage therapy, EEG biofeedback, aromatherapy, homeopathy, herbal remedies (traditional Chinese medicine), etc. Most people with epilepsy need to take antiepileptic medication to control their seizures and alternative therapies are more often complementary.
https://www.ncbi.nlm.nih.gov/pubmed/22028523
https://www.ncbi.nlm.nih.gov/pubmed/24163755
Non-surgical brain stimulation refers to techniques that use electrical currents or magnetic fields to change brain activity
non-surgical stimulation
Modified definition
true
Seizures may be characterized by body image distortions with feelings of movement (e.g. floating) or altered posture (e.g. twisting movement) in a stationary limb. Somatic illusions such as feeling of a body part being enlarged (macrosomatognosia), shrunken (microsomatognosia) or absent (asomatognosia), or elongated (hyperschematica) or shortened (hyposchematica) may also occur. Distal body parts and the tongue are more commonly affected.
non dominant parietal cortex seizure
true
true
Seizures may be characterized by body image distortions with feelings of movement (e.g. floating) or altered posture (e.g. twisting movement) in a stationary limb. Somatic illusions such as feeling of a body part being enlarged (macrosomatognosia), shrunken (microsomatognosia) or absent (asomatognosia), or elongated (hyperschematica) or shortened (hyposchematica) may also occur. Distal body parts and the tongue are more commonly affected.
https://www.epilepsydiagnosis.org/seizure/parietal-overview.html
https://www.ncbi.nlm.nih.gov/books/NBK390343/
The electroencephalogram (EEG) is a recording of the electrical activity of the brain from the scalp. The recorded waveforms reflect the cortical electrical activity.Signal intensity: EEG activity is quite small, measured in microvolts (mV).
Signal frequency: the main frequencies of the human EEG waves are, Delta, Theta, Alpha, Beta.
normal EEG pattern
http://www.case.edu/EpSO.owl#NormalEEGPattern
The electroencephalogram (EEG) is a recording of the electrical activity of the brain from the scalp. The recorded waveforms reflect the cortical electrical activity.Signal intensity: EEG activity is quite small, measured in microvolts (mV).
Signal frequency: the main frequencies of the human EEG waves are, Delta, Theta, Alpha, Beta.
https://www.medicine.mcgill.ca/physio/vlab/biomed_signals/eeg_n.htm
object distortion
true
object spatial inclination
true
https://www.ncbi.nlm.nih.gov/pubmed/12684556
Fairly regular or approximately sinusoidal waves, mostly occurring in bursts at 2-3 Hz over the occipital areas of one or both sides of the head.
Occipital intermittent rhythmic delta activity (OIRDA) is described as an intermittent, sawtooth shaped, unilateral or bilateral, symmetrical, medium or high amplitude, paroxysmal and regular delta frequency activity occurring in the occipital region during electroencephalography (EEG) monitorization
occipital intermittent rhythmic delta activity
http://www.case.edu/EpSO.owl#OccipitalIntermittentRythmicDeltaActivity
true
true
Fairly regular or approximately sinusoidal waves, mostly occurring in bursts at 2-3 Hz over the occipital areas of one or both sides of the head.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Occipital_Intermittent_Rhythmic_Delta_Activity_OIRDA&jump_to_nav=true
Occipital intermittent rhythmic delta activity (OIRDA) is described as an intermittent, sawtooth shaped, unilateral or bilateral, symmetrical, medium or high amplitude, paroxysmal and regular delta frequency activity occurring in the occipital region during electroencephalography (EEG) monitorization
http://www.journalagent.com/epilepsi/pdfs/JTES-27146-CASE_REPORT-CABALAR.pdf
Occipital lobe epilepsy is a relatively rare form of focal epilepsy, with a variety of causes. Paroxysmal visual manifestations are the hallmark of epileptic seizures arising from the occipital lobe.
occipital lobe epilepsy
http://www.case.edu/EpSO.owl#LateralFrontalEpilepsy
true
Occipital lobe epilepsy is a relatively rare form of focal epilepsy, with a variety of causes. Paroxysmal visual manifestations are the hallmark of epileptic seizures arising from the occipital lobe.
https://www.ncbi.nlm.nih.gov/pubmed/15489401
https://www.ncbi.nlm.nih.gov/pubmed/15489401
https://www.ncbi.nlm.nih.gov/pubmed/23027097
Seizures arising in the occipital lobe are characterized by focal sensory visual seizures that are subjective experiences, leading to difficulty in diagnosis in young children. Oculomotor features may also occur such as forced eye closure, eyelid fluttering, eye deviation and nystagmus. There is often involvement of other lobes as the seizure spreads.
occipital lobe seizure
https://www.epilepsy.com/learn/professionals/about-epilepsy-seizures/symptomatic-and-probably-symptomatic-focal-epilepsies-1
true
Seizures arising in the occipital lobe are characterized by focal sensory visual seizures that are subjective experiences, leading to difficulty in diagnosis in young children. Oculomotor features may also occur such as forced eye closure, eyelid fluttering, eye deviation and nystagmus. There is often involvement of other lobes as the seizure spreads.
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/9128446
occipital pole epilepsy
http://www.case.edu/EpSO.owl#OccipitalPoleEpilepsy
true
https://www.ncbi.nlm.nih.gov/pubmed/835966
occular oscillation
true
https://www.ncbi.nlm.nih.gov/pubmed/2909707
The oligoantigenic diet was developed at Great Ormond Street Hospital for Sick Children, London and at Addenbrooke's Hospital, Cambridge, as a means of identifying foods which might be causing or aggravating the conditions of young patients.
oligoantigenic diet
true
The oligoantigenic diet was developed at Great Ormond Street Hospital for Sick Children, London and at Addenbrooke's Hospital, Cambridge, as a means of identifying foods which might be causing or aggravating the conditions of young patients.
https://www.ndhealthfacts.org/wiki/Oligoantigenic_Diet
Orbitofrontal epilepsy presents with either frontal lobe type seizures with hypermotor automatism or temporal lobe type seizures with oroalimentary and manual automatisms depending on the spread pattern.
Hypermotor Seizure
orbito frontal epilepsy
http://www.case.edu/EpSO.owl#HypermotorSeizure
http://www.case.edu/EpSO.owl#OrbitoFrontalEpilepsy
Orbitofrontal epilepsy presents with either frontal lobe type seizures with hypermotor automatism or temporal lobe type seizures with oroalimentary and manual automatisms depending on the spread pattern.
https://www.ncbi.nlm.nih.gov/pubmed/23027095
Impaired awareness, initial repetitive automatisms, olfactory hallucinations and illusions and autonomic features may be seen.
orbitofrontal cortex seizure
true
Impaired awareness, initial repetitive automatisms, olfactory hallucinations and illusions and autonomic features may be seen.
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/24881594
In vitro models generated to study the toxic effects of various types of organophosphate (OP) neurotoxicants on cell and tissue culture.
organophosphates model
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/23384238
Organotypic brain slice cultures (BSCs) represent a physiologically relevant three-dimensional model of the brain.
organotypic slice cultures
true
Organotypic brain slice cultures (BSCs) represent a physiologically relevant three-dimensional model of the brain.
https://molecularneurodegeneration.biomedcentral.com/articles/10.1186/s13024-019-0346-0
https://www.ncbi.nlm.nih.gov/pubmed/24592228
Out of body experiences are described in childhood and adulthood. In the episodes a person appears to lose immediate contact with their bodies and may see himself or herself from above. Such hallucinations have been described in epileptic seizures, anoxic seizures, migraine and as a 'normal' phenomenon.
out of body experience
true
true
Out of body experiences are described in childhood and adulthood. In the episodes a person appears to lose immediate contact with their bodies and may see himself or herself from above. Such hallucinations have been described in epileptic seizures, anoxic seizures, migraine and as a 'normal' phenomenon.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#oob-experiences
Palinopsia is a distortion of processing in the visual system in which images persist or recur after the visual stimulus has been removed. It is a dysfunction of the association areas at the junction of temporal, occipital and parietal lobes and can be triggered by any lesion or dysfunction in this region.
palinopsia
http://www.case.edu/EpSO.owl#Palinopsia
Palinopsia is a distortion of processing in the visual system in which images persist or recur after the visual stimulus has been removed. It is a dysfunction of the association areas at the junction of temporal, occipital and parietal lobes and can be triggered by any lesion or dysfunction in this region.
https://www.ncbi.nlm.nih.gov/pubmed/22714609
Seizures arising in the non-dominant hemisphere may be characterized by sexual sensations affecting the genitalia. The subsequent phase of the seizure may be accompanied by sexualized behavior.
paracentral lobule seizure
true
Seizures arising in the non-dominant hemisphere may be characterized by sexual sensations affecting the genitalia. The subsequent phase of the seizure may be accompanied by sexualized behavior.
https://www.epilepsydiagnosis.org/seizure/parietal-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/19453720
parahippocampal epilepsy
http://www.case.edu/EpSO.owl#ParaHippocampalEpilepsy
true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321155/
parasitic cyst
http://www.case.edu/EpSO.owl#ParasiticCysts
true
Parietal lobe epilepsy is a relatively rare form, occurring in about 5 percent of all epilepsy patients, and affects the part of the brain responsible for touch perception, sensory information and visual perception (distinguishing amongst objects). The parietal lobe also is involved in language, writing and math skills. It can occur at any age and affects males and females at an equal rate. Causes of parietal lobe epilepsy include head trauma, difficulties during childbirth, stroke and tumor, though as many as 20 percent of parietal lobe epilepsy outcomes are of unknown origin.
parietal lobe epilepsy
http://www.case.edu/EpSO.owl#ParietalLobeEpilepsy
true
Parietal lobe epilepsy is a relatively rare form, occurring in about 5 percent of all epilepsy patients, and affects the part of the brain responsible for touch perception, sensory information and visual perception (distinguishing amongst objects). The parietal lobe also is involved in language, writing and math skills. It can occur at any age and affects males and females at an equal rate. Causes of parietal lobe epilepsy include head trauma, difficulties during childbirth, stroke and tumor, though as many as 20 percent of parietal lobe epilepsy outcomes are of unknown origin.
https://www.uwhealth.org/epilepsy-seizures/parietal-lobe-epilepsy/40341
Seizures with onset in the parietal lobe.
parietal lobe seizure
true
Seizures with onset in the parietal lobe.
https://www.epilepsydiagnosis.org/seizure/parietal-overview.html
Epileptic nystagmus may be seen. If nystagmus is seen, this is typically with the fast component to the side contralateral to the hemisphere of seizure onset and the slow component returning to the ipsilateral side. Eye movements typically occur with retained awareness, and may be accompanied by head or trunk version. There may also be eyelid flutter or forced eyelid closure.
parieto-occipital junction seizure
true
Epileptic nystagmus may be seen. If nystagmus is seen, this is typically with the fast component to the side contralateral to the hemisphere of seizure onset and the slow component returning to the ipsilateral side. Eye movements typically occur with retained awareness, and may be accompanied by head or trunk version. There may also be eyelid flutter or forced eyelid closure.
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/30909077
Seizures with a parietal and/or occipital onset.
parieto occipital epilepsy
http://www.case.edu/EpSO.owl#ParietoOccipitalEpilepsy
Modified definition
https://www.ncbi.nlm.nih.gov/pubmed/2779593
Animal models characterized by abnormal co-contractions of antagonistic muscle groups that produce twisting movements and abnormal postures.
paroxysmal dystonia model
true
Animal models characterized by abnormal co-contractions of antagonistic muscle groups that produce twisting movements and abnormal postures.
https://www.ncbi.nlm.nih.gov/pubmed/16389314
Paroxysmal exercise induced dyskinesia represents a genetically heterogenous group of conditions in which dystonia or choreoathetosis are triggered by exercise. It may be inherited in an autosomal dominant manner or present as a sporadic case. Attacks may last several minutes to half an hour and more frequently affect the lower than upper limbs. This is one of the many phenotypes associated with glucose transporter 1 (GLUT1) deficiency which is typically caused by mutations in the SLC2A1 gene.
paroxysmal exercise induced dyskinesia
true
Paroxysmal exercise induced dyskinesia represents a genetically heterogenous group of conditions in which dystonia or choreoathetosis are triggered by exercise. It may be inherited in an autosomal dominant manner or present as a sporadic case. Attacks may last several minutes to half an hour and more frequently affect the lower than upper limbs. This is one of the many phenotypes associated with glucose transporter 1 (GLUT1) deficiency which is typically caused by mutations in the SLC2A1 gene.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#paro-exercise
Paroxysmal kinesigenic dyskinesia is a hyperkinetic movement disorder characterised by brief (less than 1 minute) attacks of abnormal movements triggered by a sudden normal movement. The triggering movements are typically whole body movements and can include standing up from sitting or getting out of a car. Some individuals describe a feeling prior to the abnormal movement. This may be described as a "rush" through the body or a feeling of tightness or numbness. The abnormal movements are usually dystonic in nature, though they can appear choreiform, and can affect limbs on one or both sides of the body. Paroxysmal kinesigenic dyskinesia can be sporadic or familial, inherited in an autosomal dominant fashion, and may co-exist with epilepsy in the syndrome of familial infantile epilepsy (familial infantile epilepsy and paroxysmal kinesigenic dyskinesia syndrome, also known as ICCA syndrome). The movement disorder typically has its onset in mid-childhood or adolescence and may remit in the third decade. Paroxysmal kinesigenic dyskinesia with or without associated epilepsy is associated with mutations in the PRRT2 gene. Attacks may mimic frontal lobe seizures however movement as a trigger is the key differentiating feature in the history. Paroxysmal kinesigenic dyskinesia can respond dramatically to low dose carbamazepine.
paroxysmal kinesigenic dyskinesia
true
Paroxysmal kinesigenic dyskinesia is a hyperkinetic movement disorder characterised by brief (less than 1 minute) attacks of abnormal movements triggered by a sudden normal movement. The triggering movements are typically whole body movements and can include standing up from sitting or getting out of a car. Some individuals describe a feeling prior to the abnormal movement. This may be described as a "rush" through the body or a feeling of tightness or numbness. The abnormal movements are usually dystonic in nature, though they can appear choreiform, and can affect limbs on one or both sides of the body. Paroxysmal kinesigenic dyskinesia can be sporadic or familial, inherited in an autosomal dominant fashion, and may co-exist with epilepsy in the syndrome of familial infantile epilepsy (familial infantile epilepsy and paroxysmal kinesigenic dyskinesia syndrome, also known as ICCA syndrome). The movement disorder typically has its onset in mid-childhood or adolescence and may remit in the third decade. Paroxysmal kinesigenic dyskinesia with or without associated epilepsy is associated with mutations in the PRRT2 gene. Attacks may mimic frontal lobe seizures however movement as a trigger is the key differentiating feature in the history. Paroxysmal kinesigenic dyskinesia can respond dramatically to low dose carbamazepine.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#paro-kin
Paroxysmal nonkinesigenic dyskinesia is a hyperkinetic movement disorder characterised by mixed dystonia, choreoathetosis and dysarthria which last from a few minutes to several hours. The attacks may be triggered by emotional stress, alcohol or coffee. Attacks typically start in infancy or early childhood and can be inherited in an autosomal dominant manner associated with mutations in the myofibrillogenesis (MR-1) gene. The retained awareness and history of triggers should prevent misdiagnosis as focal seizures.
paroxysmal nonkinesigenic dyskinesia
true
Paroxysmal nonkinesigenic dyskinesia is a hyperkinetic movement disorder characterised by mixed dystonia, choreoathetosis and dysarthria which last from a few minutes to several hours. The attacks may be triggered by emotional stress, alcohol or coffee. Attacks typically start in infancy or early childhood and can be inherited in an autosomal dominant manner associated with mutations in the myofibrillogenesis (MR-1) gene. The retained awareness and history of triggers should prevent misdiagnosis as focal seizures.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#paro-nonkin
Amnesia affecting only certain memories.
partial amnesia
https://www.verywellhealth.com/amnesia-and-memory-loss-2161855
Modified definition
true
Pedaling movements of both feet.
pedaling
true
Pedaling movements of both feet.
https://www.ncbi.nlm.nih.gov/pubmed/1760211
https://www.ncbi.nlm.nih.gov/pubmed/29151098
A vision perception disorder in which objects appear closer than they actually are.
pelopsia
http://www.case.edu/EpSO.owl#Pelopsia
true
A vision perception disorder in which objects appear closer than they actually are.
https://www.yourdictionary.com/pelopsia
https://www.ncbi.nlm.nih.gov/pubmed/18762233
https://www.ncbi.nlm.nih.gov/pubmed/21939841
Penicillin-induced epilepsy model is an animal model in which penicillin used to induce epilepsy seizure on hippocampal neuron number and hippocampal volume.
penicillin-induced epilepsy model
penicillin model
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/20868357
https://www.ncbi.nlm.nih.gov/pubmed/25228809
Pentylenetetrazole (PTZ), a GABA receptor antagonist, is used to create a common chemically- induced seizure model. Amongst all animal models of seizure and epilepsy, the pentylenetetrazole-induced seizures are categorized as a model of generalized seizure (versus partial or focal seizure). It produces a myoclonic seizure that models absence (petit mal) seizures.
pentylenetetrazol model
true
Pentylenetetrazole (PTZ), a GABA receptor antagonist, is used to create a common chemically- induced seizure model. Amongst all animal models of seizure and epilepsy, the pentylenetetrazole-induced seizures are categorized as a model of generalized seizure (versus partial or focal seizure). It produces a myoclonic seizure that models absence (petit mal) seizures.
https://www.meliordiscovery.com/in-vivo-efficacy-models/pentylenetetrazole-induced-seizure-ptz/
https://www.ncbi.nlm.nih.gov/pubmed/29804730
https://www.ncbi.nlm.nih.gov/pubmed/8330586
Perinatal insults are defined as insults which likely occurred between 28 weeks of gestation to 28 days after birth.
perinatal insult
Modified definition
true
Periodic pattern (PP) refers to relative stereotypical waveforms which are frequently epileptiform and have a relatively periodic repetition rate.
periodic pattern
http://www.case.edu/EpSO.owl#PeriodicPattern
Periodic pattern (PP) refers to relative stereotypical waveforms which are frequently epileptiform and have a relatively periodic repetition rate.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23PeriodicPattern&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/19333408
Person hallucination is a form of visual hallucinations ranging from seeing a person in the absence of an external stimulus.
person hallucination
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/20618423
https://www.ncbi.nlm.nih.gov/pubmed/24251565
In vitro or in vivo models developed in research of pharmacoresistant epilepsy.
pharmacoresistant epilepsy model
true
https://www.ncbi.nlm.nih.gov/pubmed/2924747
Seizures induced when toxic concentrations of phenytoin an anti-epileptic drug is administered.
phenytion-induced seizure
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/11956004
In-vivo model in which seizures are induced by giving picrotoxin a GABAA receptor/chloride channel antagonist. Picrotoxin model is useful for screening of putative anti-epileptic drugs. Picrotoxin can be administered subcutaneously, intraperitoneally, or intravenously, because it dissolves readily in saline. Seizures occur within 30–40 minutes, showing all behavioral phenomena.
picrotoxin-induced seizure
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/11762207
https://www.ncbi.nlm.nih.gov/pubmed/11956004
https://www.ncbi.nlm.nih.gov/pubmed/1396544
Animal models in which administration of picrotoxin, the GABAA receptor antagonist into the medial PFC has been shown to reduce prepulse inhibition.
picrotoxin model
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/18550176
Animal models in which injection of pilocarpine inducing status epilepticus that is characterized by tonic–clonic generalized seizures.
pilocarpine model
true
Distinct EEG activity composed of multiple frequencies that combine to form a complex waveform.
polymorphic wave
true
Distinct EEG activity composed of multiple frequencies that combine to form a complex waveform.
https://www.medicine.mcgill.ca/physio/vlab/biomed_signals/eeg_n.htm
Sharp transient maximal over the occipital regions, positive relative to other areas, apparently occurring spontaneously during sleep. May be single or repetitive. Amplitude varies but is generally below 50µV.
positive occipital sharp transients of sleep
https://emedicine.medscape.com/article/1139332-overview#a1
true
Sharp transient maximal over the occipital regions, positive relative to other areas, apparently occurring spontaneously during sleep. May be single or repetitive. Amplitude varies but is generally below 50µV.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Positive_Occipital_Sharp_Transient_of_Sleep_POST&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/12908748
Positive visual hallucinations overrides attention to external
stimuli rather than competing with them. Those instructions that have
the effect of reducing perception by creating an illusory obstruction to it
reduce brain response to perception in the cognate sensory cortex, as
measured by ERP amplitude and regional blood flow.
positive visual hallucination
Modified definition
postictal
The postictal state is an abnormal condition that lasts for a period that begins when a seizure subsides and ends when the patient returns to baseline.
post-ictal
true
The postictal state is an abnormal condition that lasts for a period that begins when a seizure subsides and ends when the patient returns to baseline.
https://www.ncbi.nlm.nih.gov/pubmed/30252260
https://www.ncbi.nlm.nih.gov/pubmed/16954451
Seizure after stroke.
post stroke seizure
true
Seizure after stroke.
https://svn.bmj.com/content/4/1/48
https://www.ncbi.nlm.nih.gov/pubmed/23926279
Posterior cingulate epilepsy (PCE) is rare form of epilepsy where the seizure onset is located at an anatomically deep and semiologically silent area.
http://www.case.edu/EpSO.owl#PosteriorCingulateEpilepsy
posterior cingulate epilepsy
http://www.case.edu/EpSO.owl#PosteriorCingulateEpilepsy
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/8154869
Posterior temporal epilepsy seizures are likely to arise from basal rather than lateral convexity neocortex, and to have a reliably stereotyped ictal semiology. In the awake state, posterior temporal seizures begin with sudden behavioral arrest followed by secondary motor convulsive activity, usually in the form of tonic contraversive movement.
Basal Temporal Epilepsy
posterior temporal epilepsy
http://www.case.edu/EpSO.owl#BasalTemporalEpilepsy
http://www.case.edu/EpSO.owl#PosteriorTemporalEpilepsy
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/25228809
An animal model of posttraumatic epilepsy that reliably reproduces the clinical sequelae of human traumatic brain injury is essential to identify the molecular and cellular substrates of posttraumatic epileptogenesis, and perform preclinical screening of new antiepileptogenic compounds.
posttraumatic epilepsy model
true
An animal model of posttraumatic epilepsy that reliably reproduces the clinical sequelae of human traumatic brain injury is essential to identify the molecular and cellular substrates of posttraumatic epileptogenesis, and perform preclinical screening of new antiepileptogenic compounds.
https://www.ncbi.nlm.nih.gov/pubmed/17260063
Prefrontal epilepsy was considered as one variation of frontal-lobar epilepsy with prefrontal location of the focus.
prefrontal epilepsy
http://www.case.edu/EpSO.owl#PrefrontalEpilepsy
Prefrontal epilepsy was considered as one variation of frontal-lobar epilepsy with prefrontal location of the focus.
https://www.ncbi.nlm.nih.gov/pubmed/9511207
https://www.ncbi.nlm.nih.gov/pubmed/23027094
Seizures originating from the premotor cortex.
premotor epilepsy
http://www.case.edu/EpSO.owl#PremotorEpilepsy
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/10908200
Primary sensorimotor cortex seizures are focal motor seizures characterized by localized clonic, tonic-clonic, tonic or myoclonic activity. They may exhibit features of a Jacksonian march where unilateral tonic-clonic movements start in one muscle group and spread systematically to adjacent groups reflecting the spread of ictal activity through the motor cortex according to the homunculus. There may be focal somatosensory features alone, such as unilateral tingling, or in combination with motor features. Negative motor features such as focal atonic features may also occur.
primary sensorimotor cortex seizure
true
true
Primary sensorimotor cortex seizures are focal motor seizures characterized by localized clonic, tonic-clonic, tonic or myoclonic activity. They may exhibit features of a Jacksonian march where unilateral tonic-clonic movements start in one muscle group and spread systematically to adjacent groups reflecting the spread of ictal activity through the motor cortex according to the homunculus. There may be focal somatosensory features alone, such as unilateral tingling, or in combination with motor features. Negative motor features such as focal atonic features may also occur.
https://www.epilepsydiagnosis.org/seizure/frontal-lobe-overview.html
Seizures in this area result in focal sensory visual seizures, these may be positive visual phenomena (typically multi-colored shapes such as circles, flashes), or negative phenomena such as loss of a part of a visual field or blindness (amaurosis). Bilateral loss of vision may occur and this may be in the form of a black-out or a white-out. More complex formed visual images, considered focal cognitive seizures, are not seen in seizures arising in this area. The visual phenomenon is seen in the contralateral visual field to the hemisphere of seizure onset.
primary visual cortex seizure
true
Seizures in this area result in focal sensory visual seizures, these may be positive visual phenomena (typically multi-colored shapes such as circles, flashes), or negative phenomena such as loss of a part of a visual field or blindness (amaurosis). Bilateral loss of vision may occur and this may be in the form of a black-out or a white-out. More complex formed visual images, considered focal cognitive seizures, are not seen in seizures arising in this area. The visual phenomenon is seen in the contralateral visual field to the hemisphere of seizure onset.
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
Primitive behavior includes some behavior that seems to originate from early developmental stages of human instinctive behavior as a reaction pattern in response to danger and stress that also can be observed in animals.
primitive behavior
https://link.springer.com/chapter/10.1385/1-59259-872-2:189
Modified definition
true
Pseudostatus epilepticus is common in patients with psychogenic nonepileptic seizures and it is often misdiagnosed as genuine and life-threatening convulsive status epilepticus. These patients commonly have multiple episodes of ‘status’ and receive intensive care unit management. They usually have a history of other unexplained illness and of deliberate self-poisoning. Episodes of anticonvulsant-induced respiratory arrest may occur.
pseudostatus epilepticus
true
Pseudostatus epilepticus is common in patients with psychogenic nonepileptic seizures and it is often misdiagnosed as genuine and life-threatening convulsive status epilepticus. These patients commonly have multiple episodes of ‘status’ and receive intensive care unit management. They usually have a history of other unexplained illness and of deliberate self-poisoning. Episodes of anticonvulsant-induced respiratory arrest may occur.
https://www.ncbi.nlm.nih.gov/books/NBK2609/
https://www.ncbi.nlm.nih.gov/pubmed/10924866
The QOLIE-31 is a 31- item self-administered questionnaire for adults (18 years or older) with epilepsy.
QUOLIE-31
quality of life in epilepsy inventory - 31
https://www.epilepsy.com/sites/core/files/atoms/files/QOLIE-31%20for%20web-USA.pdf
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/12639061
QOLIE-89 contains 17 multi-item measures of overall quality of life, emotional well-being, role limitations due to emotional problems, social support, social isolation, energy/fatigue, worry about seizure, medication effects, health discouragement, work/driving/social function, attention/concentration, language, memory, physical function, pain, role limitations due to physical problems, and health perceptions.
quality of life in epilepsy inventory - 89
true
QOLIE-89 contains 17 multi-item measures of overall quality of life, emotional well-being, role limitations due to emotional problems, social support, social isolation, energy/fatigue, worry about seizure, medication effects, health discouragement, work/driving/social function, attention/concentration, language, memory, physical function, pain, role limitations due to physical problems, and health perceptions.
https://www.rand.org/health-care/surveys_tools/qolie.html
Muscle atonia during REM sleep.
http://www.semanticweb.org/rjyy/ontologies/2015/5/ESSO#REM_Atonia
REM atonia
rapid eye movement atonia
Muscle atonia during REM sleep.
https://www.ncbi.nlm.nih.gov/pubmed/24127148
Reading epilepsy is characterized by seizures that start between 12 and 19 years of age. There is a male predominance (1.8M:F). Seizures are elicited by reading (aloud or silently). Prognosis is good as seizures are usually minor and can be avoided through reducing exposure to the stimulus.
Primary Reading Epilepsy
reading epilepsy
http://www.case.edu/EpSO.owl#PrimaryReadingEpilepsy
true
Reading epilepsy is characterized by seizures that start between 12 and 19 years of age. There is a male predominance (1.8M:F). Seizures are elicited by reading (aloud or silently). Prognosis is good as seizures are usually minor and can be avoided through reducing exposure to the stimulus.
https://www.epilepsydiagnosis.org/syndrome/reflex-epilepsies-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/30215021
Responsive neurostimulation (RNS) is a breakthrough surgical approach to treating seizures that are not controlled by medication.
responsive neurostimulation
true
Responsive neurostimulation (RNS) is a breakthrough surgical approach to treating seizures that are not controlled by medication.
https://www.neurosurgery.pitt.edu/centers/epilepsy/responsive-neurostimulation
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Rhythmic benign variants consist of rhythmic activity that may be in the theta, alpha, or beta frequency ranges.
rhythmic benign variant
http://www.case.edu/EpSO.owl#RhythmicBenignVariant
true
Rhythmic benign variants consist of rhythmic activity that may be in the theta, alpha, or beta frequency ranges.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23RhythmicBenignVariant&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Rhythmic temporal theta bursts of drowsiness (psychomotor variant) is characterized by bursts or serial trains of rhythmic theta waves ranging from 5 to 7 hz with a flat-topped, sharp-contoured, or notched appearance.
Rhytmic Temporal Theta Bursts of Drowsiness
rhythmic temporal theta of drowsiness
http://www.case.edu/EpSO.owl#RhytmicTemporalThetaBurstsofDrowsiness
true
Rhythmic temporal theta bursts of drowsiness (psychomotor variant) is characterized by bursts or serial trains of rhythmic theta waves ranging from 5 to 7 hz with a flat-topped, sharp-contoured, or notched appearance.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23RhytmicTemporalThetaBurstsofDrowsiness
Encephalomalacia in the right frontal lobe.
right frontal encephalomalacia
http://www.case.edu/EpSO.owl#RightFrontalEncephalomalacia
Encephalomalacia in the right frontal lobe.
https://www.ncbi.nlm.nih.gov/pubmed/22134284
right fronto parietal abscess
http://www.case.edu/EpSO.owl#RightFrontoParietalAbcess
right fronto temporal glioma
http://www.case.edu/EpSO.owl#RightFrontoTemporalGlioma
A right hemispheric stroke happens when blood cannot flow to the right hemisphere (half) of your brain.
right hemispheric stroke
http://www.case.edu/EpSO.owl#RightHemisphericStroke
https://mrri.org/right-hemisphere-stroke-center/
A right hemispheric stroke happens when blood cannot flow to the right hemisphere (half) of your brain.
https://www.drugs.com/cg/right-hemispheric-stroke.html
Lesions in Mesial temporal lobe.
Mesial temporal lobe lesion
right mesial lesion
http://www.case.edu/EpSO.owl#RightMesialLesion
Lesions in Mesial temporal lobe.
https://www.ncbi.nlm.nih.gov/pubmed/29916782
Rotational horizontal vertigo is defined when the nystagmus is purely horizontal and rotational.
rotational horizontal
https://www.aafp.org/afp/2006/0115/p244.html
Modified definition
true
Rotational vertical vertigo is defined when the nystagmus is purely vertical and rotational.
rotational vertical
https://www.aafp.org/afp/2006/0115/p244.html
true
Prolonged or repetitive cutaneous stimulation in a circumscribed area of the body.
rubbing
true
true
Prolonged or repetitive cutaneous stimulation in a circumscribed area of the body.
https://www.ncbi.nlm.nih.gov/pubmed/11254785
rushing noise
true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3195159/
scenery hallucination
true
true
https://www.ncbi.nlm.nih.gov/pubmed/12427900
To make an unpleasant, loud, high noise.
screeching
true
To make an unpleasant, loud, high noise.
https://dictionary.cambridge.org/dictionary/english/screech
second line immunotherapy
https://www.j-epilepsy.org/journal/view.php?number=151
true
https://www.ncbi.nlm.nih.gov/pubmed/26063964
Occipital seizures arising in this area tend to spread to the temporal lobe producing a focal impaired awareness seizure.
inferior to the calcarine fissure
seizure arising inferior to the calcarine fissure
true
Occipital seizures arising in this area tend to spread to the temporal lobe producing a focal impaired awareness seizure.
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/26063964
Occipital seizures arising in this area can spread to the parietal lobe, fronto-parietal operculum or frontal lobes. Focal atonic motor seizures can occur if the seizure spreads rapidly to frontal regions.
seizure arising superior to the calcarine fissure
true
Occipital seizures arising in this area can spread to the parietal lobe, fronto-parietal operculum or frontal lobes. Focal atonic motor seizures can occur if the seizure spreads rapidly to frontal regions.
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/10474720
Seizures occuring during the course of HIV infection.
Seizure associated with HIV infection
seizure associated with human immunodeficiency virus infection
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/23959883
Specific focal seizure features are useful in lateralizing the seizure onset or network to one hemisphere. Features that suggest lateralization of the seizure are outlined below. These features provide strong evidence for lateralization, but it should be noted that occasionally they can be falsely lateralizing.
Unilateral ictal clonic activity or ictal dystonia suggests lateralization of the seizure to the contralateral hemisphere.
Early forced head version suggests lateralization to the hemisphere contralateral to the direction of the head version i.e. if the head turns to the right, the seizure onset is in the left hemisphere.
Ictal speech lateralizes to the non-dominant hemisphere.
Ictal aphasia lateralizes to the dominant hemisphere.
Postictal dysphasia lateralizes to the dominant hemisphere.
Preserved awareness during ictal automatisms lateralizes to the non-dominant hemisphere.
Post-ictal nose-wiping lateralizes to the hemisphere ipsilateral to the hand used for nose-wiping.
Unilateral eye-blinking lateralizes to the hemisphere ipsilateral to the eye-blinking.
Ictal vomiting lateralizes to the non-dominant hemisphere
seizure based on hemispheric lateralization
true
Specific focal seizure features are useful in lateralizing the seizure onset or network to one hemisphere. Features that suggest lateralization of the seizure are outlined below. These features provide strong evidence for lateralization, but it should be noted that occasionally they can be falsely lateralizing.
Unilateral ictal clonic activity or ictal dystonia suggests lateralization of the seizure to the contralateral hemisphere.
Early forced head version suggests lateralization to the hemisphere contralateral to the direction of the head version i.e. if the head turns to the right, the seizure onset is in the left hemisphere.
Ictal speech lateralizes to the non-dominant hemisphere.
Ictal aphasia lateralizes to the dominant hemisphere.
Postictal dysphasia lateralizes to the dominant hemisphere.
Preserved awareness during ictal automatisms lateralizes to the non-dominant hemisphere.
Post-ictal nose-wiping lateralizes to the hemisphere ipsilateral to the hand used for nose-wiping.
Unilateral eye-blinking lateralizes to the hemisphere ipsilateral to the eye-blinking.
Ictal vomiting lateralizes to the non-dominant hemisphere
https://www.epilepsydiagnosis.org/seizure/hemispheric-localization-overview.html
Localization-related epilepsies are characterized by partial seizures arising from one part of the brain. Seizure semiology correlates with initial activation of only part of one cerebral hemisphere and categorized by cerebral lobe of seizure onset.
seizure based on lobar localization
https://www.epilepsydiagnosis.org/seizure/focal-seizure-overview.html#
true
true
Localization-related epilepsies are characterized by partial seizures arising from one part of the brain. Seizure semiology correlates with initial activation of only part of one cerebral hemisphere and categorized by cerebral lobe of seizure onset.
https://www.sciencedirect.com/topics/medicine-and-dentistry/localization-related-epilepsy
A seizure is a transient occurrence of symptoms and/or signs due to abnormal excessive or synchronous neuronal activity in the brain. In EpilepsyDiagnosis.Org, the term 'features' will be used to describe both the symptoms and signs that occur during seizures. These features can be used to classify seizures. A seizure does not necessarily mean that a person has epilepsy, unless the criteria for diagnosis of epilepsy are met.
seizure classification
true
A seizure is a transient occurrence of symptoms and/or signs due to abnormal excessive or synchronous neuronal activity in the brain. In EpilepsyDiagnosis.Org, the term 'features' will be used to describe both the symptoms and signs that occur during seizures. These features can be used to classify seizures. A seizure does not necessarily mean that a person has epilepsy, unless the criteria for diagnosis of epilepsy are met.
https://www.epilepsydiagnosis.org/seizure/seizure-classification-groupoverview.html
Seizures induced by chlorinated hydrocarbon.
seizure induced by chlorinated hydrocarbon
true
Seizures induced by chlorinated hydrocarbon.
https://www.ncbi.nlm.nih.gov/pubmed/4104375
seizure not necessarily requiring a diagnosis of epilepsy
true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375749/
https://www.ncbi.nlm.nih.gov/pubmed/25012363
EEG patterns encountered during seizures.
seizure pattern
http://www.case.edu/EpSO.owl#SeizurePattern
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/22957229
Selective amygdalohippocampectomy is a surgical procedure employed in cases of medically refractory temporal lobe epilepsy of mesial temporal origin.
selective amygdalohippocampectomy
Modified definition
true
Familial (and non-familial) infantile epilepsy, formerly called benign familial (and non-familial) infantile seizures, is a syndrome characterized by the onset of seizures in the infantile period. Seizures are often frequent and intractable at onset but spontaneously resolve. The child is expected to have normal developmental progress. Familial and non-familial forms of infantile epilepsy are identical except for the presence of a family history. Familial cases show autosomal dominant inheritance and have genetic etiologies in common with self-limited familial neonatal and self-limited familial neonatal-infantile epilepsies, thus these epilepsy syndromes are likely related disorders.
self-limited familial and non-familial infantile epilepsy
true
Familial (and non-familial) infantile epilepsy, formerly called benign familial (and non-familial) infantile seizures, is a syndrome characterized by the onset of seizures in the infantile period. Seizures are often frequent and intractable at onset but spontaneously resolve. The child is expected to have normal developmental progress. Familial and non-familial forms of infantile epilepsy are identical except for the presence of a family history. Familial cases show autosomal dominant inheritance and have genetic etiologies in common with self-limited familial neonatal and self-limited familial neonatal-infantile epilepsies, thus these epilepsy syndromes are likely related disorders.
https://www.epilepsydiagnosis.org/syndrome/benign-fam-nonfam-infantile-overview.html
Self-limited neonatal seizures and familial neonatal epilepsy may have similar clinical and electrical features, but can be distinguished on the basis of family history. These entities may have similar genetic etiologies, with de novo mutations responsible for the lack of family history in self-limited neonatal seizures.
self-limited neonatal seizure and self-limited familial neonatal epilepsy
true
Self-limited neonatal seizures and familial neonatal epilepsy may have similar clinical and electrical features, but can be distinguished on the basis of family history. These entities may have similar genetic etiologies, with de novo mutations responsible for the lack of family history in self-limited neonatal seizures.
https://www.epilepsydiagnosis.org/syndrome/self-limited-neonatal-overview.html
Self-gratification or self-stimulation includes behavior which may be seen from infancy onwards, more so in pre-school girls. Rhythmic hip flexion and adduction may be accompanied by a distant expression, a flushed face and sometimes followed by sleepiness. The distant expression, sometimes associated with straining and head turning, may be confused with a focal impaired awareness seizure. The diagnosis is more difficult when the infant or young child seems unhappy during or after the rhythmic movements. The relative frequency of events and occurrence in specific circumstances, such as when bored or in a car seat or high chair, lends this behavior to home video recording. Self-gratification or self-stimulation rather than terms such as masturbation are preferred by parents and better reflect the mechanism.
Benign idiopathic infantile dyskinesia
Gratification disorder
Self Stimulation
self gratification
true
Self-gratification or self-stimulation includes behavior which may be seen from infancy onwards, more so in pre-school girls. Rhythmic hip flexion and adduction may be accompanied by a distant expression, a flushed face and sometimes followed by sleepiness. The distant expression, sometimes associated with straining and head turning, may be confused with a focal impaired awareness seizure. The diagnosis is more difficult when the infant or young child seems unhappy during or after the rhythmic movements. The relative frequency of events and occurrence in specific circumstances, such as when bored or in a car seat or high chair, lends this behavior to home video recording. Self-gratification or self-stimulation rather than terms such as masturbation are preferred by parents and better reflect the mechanism.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#infant-gratification
self limited seizure
true
Phenomenon of orgasm being a trigger for reflex seizures.
sexual seizure
http://www.case.edu/EpSO.owl#SexualSeizure
https://www.psychologytoday.com/us/blog/sex-in-the-brain/202001/what-happens-during-sexual-seizure
true
true
Phenomenon of orgasm being a trigger for reflex seizures.
https://www.ncbi.nlm.nih.gov/pubmed/27057393
A sequence of a sharp wave and a slow wave.
sharp and slow wave complex
true
A sequence of a sharp wave and a slow wave.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Sharp_and_Slow_Wave_Complex&jump_to_nav=true
A transient, clearly distinguished from background activity, with pointed peak at a conventional paper speed or time scale and duration of 70-200 ms, i.e. over 1/4-1/5 s approximately.
sharp wave
http://www.case.edu/EpSO.owl#SharpWave
true
A transient, clearly distinguished from background activity, with pointed peak at a conventional paper speed or time scale and duration of 70-200 ms, i.e. over 1/4-1/5 s approximately.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23SharpWave&jump_to_nav=true
sialorrheic seizure
http://www.case.edu/EpSO.owl#SialorrheicSeizure
The person may have different symptoms depending on which area of the brain is involved. If the abnormal electrical brain function is in the occipital lobe (the back part of the brain that is involved with vision), sight may be altered, but muscles are more commonly affected. The seizure activity is limited to an isolated muscle group, such as the fingers, or to larger muscles in the arms and legs. Consciousness is not lost in this type of seizure. The person may also experience sweating, nausea, or become pale.
Single Focal Epilepsy
simple focal seizure
http://www.case.edu/EpSO.owl#SingleFocalEpilepsy
true
The person may have different symptoms depending on which area of the brain is involved. If the abnormal electrical brain function is in the occipital lobe (the back part of the brain that is involved with vision), sight may be altered, but muscles are more commonly affected. The seizure activity is limited to an isolated muscle group, such as the fingers, or to larger muscles in the arms and legs. Consciousness is not lost in this type of seizure. The person may also experience sweating, nausea, or become pale.
https://stanfordhealthcare.org/medical-conditions/brain-and-nerves/epilepsy/types/focal-partial-seizures.html
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660156/
Brief, stereotyped unformed flashes of light and color or indistinct forms may reflect stimulation or irritation of primary visual areas, for example by tumor, migraine, or focal epileptogenic lesions.
simple visual hallucination
http://www.case.edu/EpSO.owl#SimpleVisualHallucination
true
Brief, stereotyped unformed flashes of light and color or indistinct forms may reflect stimulation or irritation of primary visual areas, for example by tumor, migraine, or focal epileptogenic lesions.
http://www.ajnr.org/content/37/5/774
simple visual pattern
https://www.mayoclinicproceedings.org/article/S0025-6196(11)63178-9/fulltext
true
true
single seizure or isolated clusters of seizure
true
Waves resembling sine waves.
sinusoidal wave
https://www.medicine.mcgill.ca/physio/vlab/biomed_signals/eeg_n.htm
true
Waves resembling sine waves.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Sinusoidal_Wave&jump_to_nav=true
situational cicardian rhythm sleep disorder
http://www.case.edu/EpSO.owl#SituationalCicardianRhythmSleepDisorder
A sleep-deprived EEG, or an electroencephalogram, is a type of EEG that requires the patient to acquire less sleep than usual before undergoing the test.
sleep deprived EEG
sleep deprived electroencephalography
true
A sleep-deprived EEG, or an electroencephalogram, is a type of EEG that requires the patient to acquire less sleep than usual before undergoing the test.
https://www.verywellhealth.com/sleep-deprived-eeg-for-seizures-4628312
A sleep EEG is a type of EEG carried out while someone is asleep.
sleep EEG
sleep electroencephalography
https://www.nhs.uk/conditions/electroencephalogram/
Modified definition
Sleep-onset rapid eye movement (SOR) refers to the occurence of REM sleep less than 15 minutes after falling sleep.
sleep onset rapid eye movement
http://www.case.edu/EpSO.owl#SleepOnsetRapidEyeMovement
Sleep-onset rapid eye movement (SOR) refers to the occurence of REM sleep less than 15 minutes after falling sleep.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23SleepOnsetRapidEyeMovement&jump_to_nav=true
Burst at 11-15 Hz but mostly at 12-14 Hz generally diffuse but of higher voltage over the central regions of the head, occurring during sleep. Amplitude varies but is mostly below 50 pV in the adult.
sleep spindle
https://emedicine.medscape.com/article/1139332-overview#a1
true
Burst at 11-15 Hz but mostly at 12-14 Hz generally diffuse but of higher voltage over the central regions of the head, occurring during sleep. Amplitude varies but is mostly below 50 pV in the adult.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Sleep_Spindle&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Small sharp spikes (SSS) consist of single monophasic or diphasic spikes with an abrupt ascending limb and a steep descending limb, are generally of low voltage and short duratiopn, usually less than 50 ms.
Benign Epileptiform Transients of Sleep
SSS
small sharp spike
http://www.case.edu/EpSO.owl#SmallShartSpike
https://emedicine.medscape.com/article/1140563-overview#a1
true
Small sharp spikes (SSS) consist of single monophasic or diphasic spikes with an abrupt ascending limb and a steep descending limb, are generally of low voltage and short duratiopn, usually less than 50 ms.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23SmallShartSpike&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/24861272
The 20-item Somatoform Dissociation Questionnaire evaluates the severity of somatoform dissociation. The SDQ-20 items were derived from a pool of 75 items describing clinically observed somatoform dissociative symptoms that in clinical settings had appeared upon activation of particular dissociative parts of the personality and that could not be medically explained. The items pertain to both negative (e.g., analgesia) and positive dissociative phenomena (e.g., site-specific pain).
SDQ-20
somatoform dissociation questionnaire
true
The 20-item Somatoform Dissociation Questionnaire evaluates the severity of somatoform dissociation. The SDQ-20 items were derived from a pool of 75 items describing clinically observed somatoform dissociative symptoms that in clinical settings had appeared upon activation of particular dissociative parts of the personality and that could not be medically explained. The items pertain to both negative (e.g., analgesia) and positive dissociative phenomena (e.g., site-specific pain).
https://onlinelibrary.wiley.com/doi/pdf/10.1002/9781118093146.app2
spark
https://www.scientificamerican.com/article/brains-gilal-cells-spark-seizures/
true
true
https://www.ncbi.nlm.nih.gov/pubmed/26365965
EEG patterns other than normal ones.
special pattern
http://www.case.edu/EpSO.owl#SpecialPattern
Modified definition
special seizure
http://www.case.edu/EpSO.owl#SpecialSeizure
https://www.ncbi.nlm.nih.gov/books/NBK2605/
https://www.ncbi.nlm.nih.gov/pubmed/6537832
speech arrest
true
true
true
speech interrupted
https://www.epilepsy.com/article/2014/3/types-language-problems-epilepsy
true
true
A pattern consisting of a spike followed by a slow wave.
spike and slow wave complex
true
A pattern consisting of a spike followed by a slow wave.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Spike-and-Slow-Wave_Complex&jump_to_nav=true
Spindle stupor (SS) refers to an EEG recording of coma where the record is like that of a typical stage-II sleep pattern.
spindle stupor
http://www.case.edu/EpSO.owl#SpindleStupor
Spindle stupor (SS) refers to an EEG recording of coma where the record is like that of a typical stage-II sleep pattern.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23SpindleStupor&jump_to_nav=true
status pattern
http://www.case.edu/EpSO.owl#StatusPattern
https://www.ncbi.nlm.nih.gov/pubmed/32144451
status semiology
http://www.case.edu/EpSO.owl#StatusSemiology
true
https://www.ncbi.nlm.nih.gov/pubmed/29755904
A specialized type of external beam radiation therapy called stereotactic radiation uses focused radiation beams targeting a well-defined tumor. It relies on detailed imaging, computerized three-dimensional treatment planning and precise treatment set-up to deliver the radiation dose with extreme accuracy.
Stereotactic Radiation Therapy
stereotactic radiotherapy
true
A specialized type of external beam radiation therapy called stereotactic radiation uses focused radiation beams targeting a well-defined tumor. It relies on detailed imaging, computerized three-dimensional treatment planning and precise treatment set-up to deliver the radiation dose with extreme accuracy.
https://www.rtanswers.org/How-does-radiation-therapy-work/Stereotactic-Radiation-Therapy
A class of multivariate regression models that are used for causal interpretation of qualitative observational data, for instance, to evaluate the relationship between physical and psychosocial factors and the quality of life among adults with epilepsy.
structural equation model
true
A class of multivariate regression models that are used for causal interpretation of qualitative observational data, for instance, to evaluate the relationship between physical and psychosocial factors and the quality of life among adults with epilepsy.
https://www.ncbi.nlm.nih.gov/pubmed/22995680
Structural epilepsies are conceptualized as having a distinct structural brain abnormality that has been demonstrated to be associated with a substantially increased risk of epilepsy in appropriately designed studies. The structural brain abnormality can be acquired (such as due to stroke, trauma or infection) or may be of genetic origin; however, as we currently understand it, the structural brain abnormality is a separate disorder interposed between the acquired or genetic defect and the epilepsy.
Structural Cause
structural etiology
http://www.case.edu/EpSO.owl#StructuralCause
true
Structural epilepsies are conceptualized as having a distinct structural brain abnormality that has been demonstrated to be associated with a substantially increased risk of epilepsy in appropriately designed studies. The structural brain abnormality can be acquired (such as due to stroke, trauma or infection) or may be of genetic origin; however, as we currently understand it, the structural brain abnormality is a separate disorder interposed between the acquired or genetic defect and the epilepsy.
https://www.epilepsydiagnosis.org/aetiology/structural-groupoverview.html
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4164293/
A seizure model in which administration of strychine induces generalized tonic-clonic seizures.
strychnine model
Modified definition
https://www.ncbi.nlm.nih.gov/books/NBK2511/
To pull in liquid or air through your mouth without using your teeth, or to move the tongue and muscles of the mouth around something inside your mouth, often in order to dissolve it.
Suck
sucking
true
true
To pull in liquid or air through your mouth without using your teeth, or to move the tongue and muscles of the mouth around something inside your mouth, often in order to dissolve it.
https://dictionary.cambridge.org/dictionary/english/suck
Focal seizures arising from the supplementary motor area (SMA), a region anterior to the motor cortex in the midline, is a type of frontal lobe epilepsy that typically involves unilateral or asymmetrical bilateral tonic posturing and may be associated with facial grimacing, vocalization, or speech arrest.
supplementary motor area seizure
http://www.case.edu/EpSO.owl#SupplementaryMotorAreaEpilepsy
Modified definition
true
Symptomatic generalized epilepsy (SGE) encompasses a group of challenging epilepsy syndromes. As a group, SGE has 3 main features: (1) multiple seizure types, especially generalized tonic and atonic seizures; (2) brain dysfunction other than the seizures, in the intellectual domain (mental retardation or developmental delay) and in the motor domain (cerebral palsy); and (3) EEG evidence of diffuse brain abnormality.
symptomatic focal epilepsy
symptomatic epilepsy
true
Symptomatic generalized epilepsy (SGE) encompasses a group of challenging epilepsy syndromes. As a group, SGE has 3 main features: (1) multiple seizure types, especially generalized tonic and atonic seizures; (2) brain dysfunction other than the seizures, in the intellectual domain (mental retardation or developmental delay) and in the motor domain (cerebral palsy); and (3) EEG evidence of diffuse brain abnormality.
https://emedicine.medscape.com/article/1851206-overview
Attacks of sustained dystonic postures of limbs and trunk can be initiated by mild environmental stimuli in an inbred line of Syrian hamsters. The trait is determined by an autosomal simple recessive genetic mutation, originally designated by the gene symbol sz, because the abnormal movements were thought to represent epileptic seizures.
sz mutant hamster
true
Attacks of sustained dystonic postures of limbs and trunk can be initiated by mild environmental stimuli in an inbred line of Syrian hamsters. The trait is determined by an autosomal simple recessive genetic mutation, originally designated by the gene symbol sz, because the abnormal movements were thought to represent epileptic seizures.
https://www.ncbi.nlm.nih.gov/pubmed/2779593
Tantrums and rage reactions are almost never part of an epileptic seizure. Tantrums are common in young children and are usually easy to distinguish from an epileptic seizure. Rage reactions, episodic dyscontrol or intermittent explosive disorder describe situations in which there are recurrent episodes of rage which seem to be out of proportion to relatively minor stimuli. Sustained outbursts of aggression may occur for many minutes, sometimes for up to half an hour or longer. There may screaming, swearing, aggression, damage to property and physical violence. Through the event it may seem that the individual is not normally responsive. Individuals often report no memory for an event afterwards, and may express remorse for their actions. Rage reactions are usually much longer and are only very broadly stereotyped when compared to focal seizures. A rage reaction, when closely analysed is likely to include a series of complex directed motor tasks, which would be exceptionally rare for an epileptic seizure. Aggressive or violent behaviors in an epileptic seizure are very rare, and if seen are typically confused and non-directed actions.
Tantrums
rage
tantrum and rage reaction
true
Tantrums and rage reactions are almost never part of an epileptic seizure. Tantrums are common in young children and are usually easy to distinguish from an epileptic seizure. Rage reactions, episodic dyscontrol or intermittent explosive disorder describe situations in which there are recurrent episodes of rage which seem to be out of proportion to relatively minor stimuli. Sustained outbursts of aggression may occur for many minutes, sometimes for up to half an hour or longer. There may screaming, swearing, aggression, damage to property and physical violence. Through the event it may seem that the individual is not normally responsive. Individuals often report no memory for an event afterwards, and may express remorse for their actions. Rage reactions are usually much longer and are only very broadly stereotyped when compared to focal seizures. A rage reaction, when closely analysed is likely to include a series of complex directed motor tasks, which would be exceptionally rare for an epileptic seizure. Aggressive or violent behaviors in an epileptic seizure are very rare, and if seen are typically confused and non-directed actions.
https://www.epilepsydiagnosis.org/epilepsy-imitators.html#tantrums
https://www.ncbi.nlm.nih.gov/pubmed/29763181
To hit something gently, and often repeatedly, especially making short, sharp noises.
Tap
tapping
true
true
To hit something gently, and often repeatedly, especially making short, sharp noises.
https://dictionary.cambridge.org/dictionary/english/tap
https://www.ncbi.nlm.nih.gov/pubmed/2804800
Occurrs more characteristically as trains of 50-100 µV sinusoidal or saw-toothed 1-4Hz activity, recorded predominantly from anterior temporal regions.
Temporal intermittent rhythmic delta activity (TIRDA) is an EEG pattern characterized by intermittent rhythmic sinusoidal bursts and trains of delta activity localized over the temporal regions
TIRDA
temporal intermittent rythmic delta activity
http://www.case.edu/EpSO.owl#TemporalIntermittentRythmicDeltaActivity
Modified definition
Temporal intermittent rhythmic delta activity (TIRDA) is an EEG pattern characterized by intermittent rhythmic sinusoidal bursts and trains of delta activity localized over the temporal regions
https://www.sciencedirect.com/science/article/pii/S1388245718313701
Temporal lobe seizures are characterized by behavioral arrest and impaired awareness. Automatisms are common during the seizure, and include oral and/or manual automatisms. There may sensory (auditory), emotional (fear), cognitive (deja vu) or autonomic features (epigastric sensation, tachycardia, colour change) prior to onset of impaired awareness. Postictal confusion typically occurs.
temporal lobe seizure
true
Temporal lobe seizures are characterized by behavioral arrest and impaired awareness. Automatisms are common during the seizure, and include oral and/or manual automatisms. There may sensory (auditory), emotional (fear), cognitive (deja vu) or autonomic features (epigastric sensation, tachycardia, colour change) prior to onset of impaired awareness. Postictal confusion typically occurs.
https://www.epilepsydiagnosis.org/seizure/temporal-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/21704564
Temporo-parieto-occipital (TPO) junction is a complex brain territory heavily involved in several high-level neurological functions, such as language, visuo-spatial recognition, writing, reading, symbol processing, calculation, self-processing, working memory, musical memory, and face and object recognition.
temporo-parieto-occipital junction
true
Temporo-parieto-occipital (TPO) junction is a complex brain territory heavily involved in several high-level neurological functions, such as language, visuo-spatial recognition, writing, reading, symbol processing, calculation, self-processing, working memory, musical memory, and face and object recognition.
https://www.ncbi.nlm.nih.gov/pubmed/24975421
https://www.ncbi.nlm.nih.gov/pubmed/12615636
Epilepsy characterized by seizures arising from temporo-occipital cortex. Visual hallucinations are the hallmark of occipital seizures, the visual hallucinations become complex and colourful, and scenes of varying complexity may be ‘seen’
temporo occipital epilepsy
http://www.case.edu/EpSO.owl#TemporoOccipitalEpilepsy
Modified definition
https://www.ncbi.nlm.nih.gov/pubmed/15632275
Epilepsy characterized by seizures arising from temporo-parietal junction
temporo parietal epilepsy
http://www.case.edu/EpSO.owl#TemporoParietalEpilepsy
Modified definition
https://www.ncbi.nlm.nih.gov/pubmed/21939841
The model involves the stereotactic injection of a minute dose of the toxin (secreted by the bacterium Clostridium tetani) into the brain.
tetanus toxin model
true
Theta activity refers to activity with a frequency range of 4 to 8 Hz.
theta activity
http://www.case.edu/EpSO.owl#ThetaActivity
https://emedicine.medscape.com/article/1139332-overview#a1
Theta activity refers to activity with a frequency range of 4 to 8 Hz.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23ThetaActivity&jump_to_nav=true
Theta stuport (TS) / Theta Coma (TC) refers to predominance of theta waves in a comatose/stuporous patient.
theta stupor
theta coma
http://www.case.edu/EpSO.owl#ThetaComa
Theta stuport (TS) / Theta Coma (TC) refers to predominance of theta waves in a comatose/stuporous patient.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23ThetaComa&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/26002462
The tottering mouse is the best characterized of the Cacna1a mutation, encodes a P601L missense mutation.
Tottering mice
tottering mouse
modified definition
true
Toxins cause seizures by altering the balance of excitation and inhibition in the nervous system or interfering with energy metabolism.
toxic cause of seizure
true
Toxins cause seizures by altering the balance of excitation and inhibition in the nervous system or interfering with energy metabolism.
https://www.sciencedirect.com/science/article/pii/S1096286798800376
An isolated wave or pattern that is distinctly different from background activity.
transient
https://www.medicine.mcgill.ca/physio/vlab/biomed_signals/eeg_n.htm
true
An isolated wave or pattern that is distinctly different from background activity.
https://bioportal.bioontology.org/ontologies/ESSO/?p=classes&conceptid=http%3A%2F%2Fwww.semanticweb.org%2Frjyy%2Fontologies%2F2015%2F5%2FESSO%23Transient&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/26307329
The Trigeminal Nerve Stimulation (TNS) system is a type of treatment modality which is not yet FDA approved but is available in Europe and other countries. Its mechanism of action is similar to the VNS system and it also appears to have anti-depression effects in addition to anti-epileptic benefits.
trigeminal nerve stimulation
modified definition
true
Triggers are situations that can bring on a seizure in some people with epilepsy. Triggers can differ from person to person, but common triggers include tiredness and lack of sleep, stress, alcohol, and not taking medication.
Trigger factor for seizure
trigger factor for seizure
https://www.epilepsy.com/learn/about-epilepsy-basics/what-are-risk-factors
true
Triggers are situations that can bring on a seizure in some people with epilepsy. Triggers can differ from person to person, but common triggers include tiredness and lack of sleep, stress, alcohol, and not taking medication.
https://www.epilepsysociety.org.uk/seizure-triggers#.XI9qNygzbIU
Triphasic waves (TW) refer to high amplitude (>70 µV) positive sharp transients which are preceded and followed by relatively low-amplitude negative waves.
triphasic wave
http://www.case.edu/EpSO.owl#TriphasicWave
true
Triphasic waves (TW) refer to high amplitude (>70 µV) positive sharp transients which are preceded and followed by relatively low-amplitude negative waves.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23TriphasicWave&jump_to_nav=true
twisting
true
A seizure may be unclassified due to inadequate information to allow it to be placed in the focal, generalized or unknown onset categories. This may occur if it was not witnessed at onset, and if results of investigations (such as EEG and imaging) are not yet available.
unclassified seizure onset
true
A seizure may be unclassified due to inadequate information to allow it to be placed in the focal, generalized or unknown onset categories. This may occur if it was not witnessed at onset, and if results of investigations (such as EEG and imaging) are not yet available.
https://www.epilepsydiagnosis.org/seizure/unknown-onset-groupoverview.html
The term 'unknown' is used to denote where it is understood that the patient has epilepsy, but it is not possible to denote whether it is focal, generalized, or combined focal and generalized. This may occur due to insufficient information to classify the epilepsy, for example if the EEG is normal/uninformative.
unknown epilepsy
true
The term 'unknown' is used to denote where it is understood that the patient has epilepsy, but it is not possible to denote whether it is focal, generalized, or combined focal and generalized. This may occur due to insufficient information to classify the epilepsy, for example if the EEG is normal/uninformative.
https://www.epilepsydiagnosis.org/epilepsy/unknown-epilepsy-groupoverview.html
'Unknown' is meant to be viewed neutrally and to designate that the nature of the underlying cause of the epilepsy is as yet unknown; it may have a fundamental genetic defect at its core or there may be a separate as yet unrecognized disorder.
unknown etiology
true
'Unknown' is meant to be viewed neutrally and to designate that the nature of the underlying cause of the epilepsy is as yet unknown; it may have a fundamental genetic defect at its core or there may be a separate as yet unrecognized disorder.
https://www.epilepsydiagnosis.org/aetiology/unknown-groupoverview.html
For everyday purposes seizures are broadly categorized as either generalized or focal in onset, these terms can be used where appropriate, but there are seizures that cannot be categorized in this manner and are classified as having unknown onset. Seizures with unknown onset can be further classified as motor (for example epileptic spasm, tonic-clonic), or non-motor (for example, behavior arrest) in type.
unknown onset seizure
true
For everyday purposes seizures are broadly categorized as either generalized or focal in onset, these terms can be used where appropriate, but there are seizures that cannot be categorized in this manner and are classified as having unknown onset. Seizures with unknown onset can be further classified as motor (for example epileptic spasm, tonic-clonic), or non-motor (for example, behavior arrest) in type.
https://www.epilepsydiagnosis.org/seizure/unknown-onset-groupoverview.html
Not worthy; lacking worth or excellence.
unworthiness
http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0004-282X2011000600009
true
true
Not worthy; lacking worth or excellence.
https://www.dictionary.com/browse/unworthiness
Uremic encephalopathy is a metabolic disorder that occurs in patients with acute or chronic renal failure. This toxic-metabolic encephalopathy is a complication resulting from endogenous uremic toxins in patients with severe renal failure. The pathogenesis is complex and unclear.
uremic encephalopathy
https://emedicine.medscape.com/article/239191-overview
https://www.epilepsy.com/learn/professionals/co-existing-disorders/renal-disorders/uremic-encephalopathy
true
true
Uremic encephalopathy is a metabolic disorder that occurs in patients with acute or chronic renal failure. This toxic-metabolic encephalopathy is a complication resulting from endogenous uremic toxins in patients with severe renal failure. The pathogenesis is complex and unclear.
https://www.ncbi.nlm.nih.gov/pubmed/27127003
https://www.ncbi.nlm.nih.gov/pubmed/26167207
Urine organic acid analysis detects a wide range of compounds. It is an excellent diagnostic test for the organic acidemias involving propionic, methylmalonic, and isovaleric acids. It also detects glutaric acid, which is a progressive neurotoxic defect in biomolecule conversion.
urine organic acid test
true
Urine organic acid analysis detects a wide range of compounds. It is an excellent diagnostic test for the organic acidemias involving propionic, methylmalonic, and isovaleric acids. It also detects glutaric acid, which is a progressive neurotoxic defect in biomolecule conversion.
https://www.sciencedirect.com/topics/veterinary-science-and-veterinary-medicine/urine-organic-acids
The predominant symptoms of the patients in this group were dizziness, sweating,
nausea, and weakness which came on suddenly and usually without any obvious cause. These might be described as periodic episodes of vasomotor hyperactivity, and it was often accompanied by subjective anxiety
vasomotor seizure
http://www.case.edu/EpSO.owl#VasomotorSeizure
The predominant symptoms of the patients in this group were dizziness, sweating,
nausea, and weakness which came on suddenly and usually without any obvious cause. These might be described as periodic episodes of vasomotor hyperactivity, and it was often accompanied by subjective anxiety
https://jnnp.bmj.com/content/jnnp/12/1/25.full.pdf
https://www.ncbi.nlm.nih.gov/pubmed/?term=%27vertical+occular+oscillation%27+epilepsy
vertical occular oscillation
true
true
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5308014/
An aura is usually considered to be the initial clinical sign of a seizure.Vertigo auras may be associated with the areas near the temporal lobe or parietal lobe.
vertigo aura
modified definition
true
Video telemetry, also called video EEG, is a special type of EEG, where the patient is filmed while an EEG recording is taken. This can help provide more information about the brain activity.
video telemetry
https://www.epilepsysociety.org.uk/eeg-electroencephalogram#.XFE6tFwzbIU
true
Video telemetry, also called video EEG, is a special type of EEG, where the patient is filmed while an EEG recording is taken. This can help provide more information about the brain activity.
https://www.nhs.uk/conditions/electroencephalogram/
Antibodies directed against the voltage gated potassium channels bind to other proteins including LGI1 (leucine-rich, glioma-inactivated 1 protein) and CASPR2 (contactin-associated protein 2) resulting in a complex antibody. These antibodies cause limbic encephalitis with the following common features:
Short term memory loss
Intractable focal seizures with a high frequency, these commonly have temporal lobe features; however focal sensory olfactory seizures or focal autonomic seizures with piloerection (with shivering phenomena) are distinctive seizure types in this etiology
Focal motor seizures with dystonia in face and arm (brief episodes of unilateral facial grimace and arm posturing) - these are characteristic of antibody to LGI1
Hyponatremia
Dysautonomia
Sleep disturbance
Psychiatric symptoms
voltage-gated potassium channel antibody
true
Antibodies directed against the voltage gated potassium channels bind to other proteins including LGI1 (leucine-rich, glioma-inactivated 1 protein) and CASPR2 (contactin-associated protein 2) resulting in a complex antibody. These antibodies cause limbic encephalitis with the following common features:
Short term memory loss
Intractable focal seizures with a high frequency, these commonly have temporal lobe features; however focal sensory olfactory seizures or focal autonomic seizures with piloerection (with shivering phenomena) are distinctive seizure types in this etiology
Focal motor seizures with dystonia in face and arm (brief episodes of unilateral facial grimace and arm posturing) - these are characteristic of antibody to LGI1
Hyponatremia
Dysautonomia
Sleep disturbance
Psychiatric symptoms
https://www.epilepsydiagnosis.org/aetiology/antibody-mediated-overview.html#voltage-gated
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Wicket spikes consist of intermittent trains or clusters of monophasic arciform waveform or single spike-like waveform that look like a Greek mu or wicket.
wicket spike
wicket wave
http://www.case.edu/EpSO.owl#WicketSpike
https://emedicine.medscape.com/article/1140563-overview#a1
true
Wicket spikes consist of intermittent trains or clusters of monophasic arciform waveform or single spike-like waveform that look like a Greek mu or wicket.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23WicketSpike&jump_to_nav=true
Worthiness is a quality of being suitable or having some kind of value.
worthiness
http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0004-282X2011000600009
true
true
Worthiness is a quality of being suitable or having some kind of value.
https://www.vocabulary.com/dictionary/worthiness
Elevated concentrations of zinc (Zn2+) (>100 mM) may contribute to neuronal cell death during, seizures, Seizures produced by the intracerebral injection of zinc sulphate (ZnSO4) have proven that it is a convulsant capable of inducing an experimental model of chronic epilepsy; when 600 pg/kg of ZnSO4 are applied via intracerebral injection to experimental animals, typical clonic seizures are observed
zinc model
true
Elevated concentrations of zinc (Zn2+) (>100 mM) may contribute to neuronal cell death during, seizures, Seizures produced by the intracerebral injection of zinc sulphate (ZnSO4) have proven that it is a convulsant capable of inducing an experimental model of chronic epilepsy; when 600 pg/kg of ZnSO4 are applied via intracerebral injection to experimental animals, typical clonic seizures are observed
https://www.ncbi.nlm.nih.gov/pubmed/20868357
https://www.ncbi.nlm.nih.gov/pubmed/23002376
https://www.ncbi.nlm.nih.gov/pubmed/28324301
MRI scanners built around 1.5 Tesla (T) magnet.
1.5 Tesla (1.5 T) MRI
Magnetic Resonance Imaging (1.5 Tesla)
1.5 Tesla magnetic resonance imaging
https://jamanetwork.com/journals/jamaneurology/article-abstract/585216
Modified definition
true
true
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Consist of short trains of arch-shaped waveforms with alternating postive spiky components and a negative, smooth, rounded waveforms that occur at a rate of 14 Hz or 6-7 Hz and last from 0.5 to 1 second.
Fourteen-SixHertzPositiveBurst
14Hz and 6Hz positive spike
http://www.case.edu/EpSO.owl#Fourteen-SixHertzPositiveBurst
https://emedicine.medscape.com/article/1140563-overview#a1
true
Consist of short trains of arch-shaped waveforms with alternating postive spiky components and a negative, smooth, rounded waveforms that occur at a rate of 14 Hz or 6-7 Hz and last from 0.5 to 1 second.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23Fourteen-SixHertzPositiveBurst&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/15572277
3-nitropropionic acid evoked seizures.
3-nitropropionic acid-induced seizure
true
https://www.ncbi.nlm.nih.gov/pubmed/20955719
Epilepsy in-vitro model induced by 4-aminopyridine.
4-aminopyridine-induced seizure
Modified definition
true
https://www.ncbi.nlm.nih.gov/pubmed/24013377
In vivo and in vitro models to evoke epileptiform activity by applying or injecting 4-Aminopyridine in low concentrations.
4-aminopyridine slice model
Modified definition
true
https://www.ncbi.nlm.nih.gov/books/NBK390352/
Six-hertz spike-and-wave bursts (phantom spike and wave) are brief bursts, lasting 1 to 2 seconds with a repitition rate of 6Hz with a range of 5-7 hz.
Phantom spike and wave
6Hz phantom spike and wave
http://www.case.edu/EpSO.owl#Six-HertzSpikeWaveBurst
https://emedicine.medscape.com/article/1140563-overview#a1
true
Six-hertz spike-and-wave bursts (phantom spike and wave) are brief bursts, lasting 1 to 2 seconds with a repitition rate of 6Hz with a range of 5-7 hz.
https://bioportal.bioontology.org/ontologies/EPSO/?p=classes&conceptid=http%3A%2F%2Fwww.case.edu%2FEpSO.owl%23Six-HertzSpikeWaveBurst&jump_to_nav=true
https://www.ncbi.nlm.nih.gov/pubmed/20951004
The 6 Hz Seizure Model is categorized as a partial or focal form of seizure (Psychomotor Seizure).
6 Hertz psychomotor
true
The 6 Hz Seizure Model is categorized as a partial or focal form of seizure (Psychomotor Seizure).
https://www.meliordiscovery.com/in-vivo-efficacy-models/6-hz-psychomotor-seizure-model-melior-discovery/
https://www.ncbi.nlm.nih.gov/pubmed/24861272
The Ages & Stages Questionnaires®, Third Edition (ASQ®-3) pinpoints developmental progress in children between the ages of one month to 5 ½ years. Its success lies in its parent-centric approach and inherent ease-of-use—a combination that has made it the most widely used developmental screener across the globe.
ASQ
age and sex questionnaire
The Ages & Stages Questionnaires®, Third Edition (ASQ®-3) pinpoints developmental progress in children between the ages of one month to 5 ½ years. Its success lies in its parent-centric approach and inherent ease-of-use—a combination that has made it the most widely used developmental screener across the globe.
https://agesandstages.com/products-pricing/asq3/
https://www.ncbi.nlm.nih.gov/pubmed/2395534
C57BL/10Bg mice display behavioral arrest characterized by periods of marked inactivity, similar to generalized absence seizures.
C57BL/10Bg mice
C57BL/10Bg sps/sps mouse
true
C57BL/10Bg mice display behavioral arrest characterized by periods of marked inactivity, similar to generalized absence seizures.
https://www.sciencedirect.com/science/article/abs/pii/030439409090077M
https://www.ncbi.nlm.nih.gov/pubmed/31961886
The WHOQOL-BREF is a 26-item instrument consisting of four domains: physical health (7 items), psychological health (6 items), social relationships (3 items), and environmental health (8 items); it also contains QOL and general health items. Each individual item of the WHOQOL-BREF is scored from 1 to 5 on a response scale, which is stipulated as a five-point ordinal scale. The scores are then transformed linearly to a 0–100-scale.
WHO-QOL BREF
World Health Organization quality of life instrument, short form
true
The WHOQOL-BREF is a 26-item instrument consisting of four domains: physical health (7 items), psychological health (6 items), social relationships (3 items), and environmental health (8 items); it also contains QOL and general health items. Each individual item of the WHOQOL-BREF is scored from 1 to 5 on a response scale, which is stipulated as a five-point ordinal scale. The scores are then transformed linearly to a 0–100-scale.
https://www.ncbi.nlm.nih.gov/pubmed/22952508
Familial (autosomal dominant) focal epilepsies are monogenic (single gene) forms of epilepsy identified in large families with an epileptic trait segregating in the absence of environmental factors.
familial (autosomal dominant) focal epilepsy
true
Familial (autosomal dominant) focal epilepsies are monogenic (single gene) forms of epilepsy identified in large families with an epileptic trait segregating in the absence of environmental factors.
https://www.ncbi.nlm.nih.gov/books/NBK2595/
Seizures with these features typically arise in the mesial temporal lobe.
focal autonomic seizure with epigastric sensation or with nausea / vomiting
true
Seizures with these features typically arise in the mesial temporal lobe.
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
focal autonomic seizure with hypoventilation/hyperventilation/altered respiration
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
true
https://www.ncbi.nlm.nih.gov/pubmed/15562299
Seizures with cutaneous manifestations such as flushing (markedly red in the face) or pallor (pale color of the skin).
focal autonomic seizure with pallor/flushing
http://epilepsyontario.org/about-epilepsy/types-of-seizures/simple-partial-seizures/
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
Modified definition
true
true
https://www.ncbi.nlm.nih.gov/pubmed/23862049
https://www.ncbi.nlm.nih.gov/pubmed/25988019
https://www.ncbi.nlm.nih.gov/pubmed/26038597
Seizures with cardiac arrhythmias such as change in heart rate variability, ictal tachycardias, ictal bradycardia, atrioventricular (AV) block and asystole.
focal autonomic seizure with palpitation/tachycardia /bradycardia/asystole
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
Modified definition
true
true
https://www.ncbi.nlm.nih.gov/pubmed/22050551
focal autonomic seizure with pupillary dilation/constriction
http://epilepsyontario.org/about-epilepsy/types-of-seizures/simple-partial-seizures/
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
true
true
true
https://www.ncbi.nlm.nih.gov/pubmed/10932282
https://www.ncbi.nlm.nih.gov/pubmed/16060951
https://www.ncbi.nlm.nih.gov/pubmed/29686574
These are focal onset seizures with autonomic phenomena. The epigastric aura, an urge to urinate has been associated with a seizure focus in the right hemisphere. The ictal urge to defecate has been reported rarely and has not been lateralized.
focal autonomic seizure with urge to urinate/defecate
https://www.epilepsydiagnosis.org/seizure/autonomic-overview.html
Modified definition
true
true
https://www.ncbi.nlm.nih.gov/books/NBK2605
The onset of inability to repeat speech that is heard, due to failure to encode phonological information, in the setting of intact auditory comprehension (full understanding of what is heard), and fluent speech production (subject to paraphrasic errors).
focal cognitive seizure with conduction dysphasia/aphasia
true
true
The onset of inability to repeat speech that is heard, due to failure to encode phonological information, in the setting of intact auditory comprehension (full understanding of what is heard), and fluent speech production (subject to paraphrasic errors).
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/22957231
Characterized by memory phenomena such as feelings of familiarity (deja vu) and unfamiliarity (jamais vu).
focal cognitive seizure with de javu / jamais vu
true
true
true
Characterized by memory phenomena such as feelings of familiarity (deja vu) and unfamiliarity (jamais vu).
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/21478188
Characterized by difficulty completing or understanding mathematical calculation. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
focal cognitive seizure with dyscalculia/acalculia
true
true
Characterized by difficulty completing or understanding mathematical calculation. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/14667072
Characterized by difficulty in writing. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
focal cognitive seizure with dysgraphia/agraphia
true
true
Characterized by difficulty in writing. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
The seizure onset is associated with inability to read, due to impairment in understanding written words. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
focal cognitive seizure with dyslexia/alexia
true
The seizure onset is associated with inability to read, due to impairment in understanding written words. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/16563807
The onset of inability to speak, in a patient who reports being aware of what they wished to say but being unable to express this. This seizure type is to be distinguished from a focal motor seizure with dysarthria/anarthria in which the patient speaks but speech is poorly articulated (a speech motor disorder).
focal cognitive seizure with expressive dysphasia/aphasia
https://emedicine.medscape.com/article/1176568-clinical
true
true
true
The onset of inability to speak, in a patient who reports being aware of what they wished to say but being unable to express this. This seizure type is to be distinguished from a focal motor seizure with dysarthria/anarthria in which the patient speaks but speech is poorly articulated (a speech motor disorder).
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
The onset of inability to understand language in the absence of general confusion. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
focal cognitive seizure with receptive dysphasia/aphasia
true
The onset of inability to understand language in the absence of general confusion. This seizure type is seen in seizures involving the dominant hemisphere parieto-temporal lobe region.
https://www.epilepsydiagnosis.org/seizure/cognitive-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/11039971
Characterized by the presence of fear, worry, anxiety or panic as an expressed or observed emotion, at the outset of the seizure. Because of the unpleasant nature of these seizures, patients may also have anticipatory anxiety about having seizures. These seizures arise in mesial temporal networks, especially the amygdala. They can be distinguished from panic attacks, by the presence of impaired awareness, automatisms and other features of an epileptic seizure appearing in a stereotyped manner. They are also distinguished from a focal autonomic seizure with epigastric sensation, where the onset seizure feature is an autonomic epigastric sensation, and fear may be present as a secondary feature.
focal emotional seizure with fear/anxiety/panic
https://www.epilepsy.com/learn/challenges-epilepsy/moods-and-behavior/mood-and-behavior-101/anxiety
true
true
true
Characterized by the presence of fear, worry, anxiety or panic as an expressed or observed emotion, at the outset of the seizure. Because of the unpleasant nature of these seizures, patients may also have anticipatory anxiety about having seizures. These seizures arise in mesial temporal networks, especially the amygdala. They can be distinguished from panic attacks, by the presence of impaired awareness, automatisms and other features of an epileptic seizure appearing in a stereotyped manner. They are also distinguished from a focal autonomic seizure with epigastric sensation, where the onset seizure feature is an autonomic epigastric sensation, and fear may be present as a secondary feature.
https://www.epilepsydiagnosis.org/seizure/emotional-overview.html
https://www.ncbi.nlm.nih.gov/books/NBK2598
The onset of the seizure is characterized by difficulty with articulation of speech, due to impaired coordination of muscles involved in speech sound production. Receptive and expressive language functions are intact, however speech is poorly articulated and is less intelligible.
focal motor seizure with dysarthria / anarthria
true
true
The onset of the seizure is characterized by difficulty with articulation of speech, due to impaired coordination of muscles involved in speech sound production. Receptive and expressive language functions are intact, however speech is poorly articulated and is less intelligible.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
The seizure onset is characterized by weakness or complete paralysis of a muscle or group of muscles.
focal motor seizure with paresis/paralysis
true
true
The seizure onset is characterized by weakness or complete paralysis of a muscle or group of muscles.
https://www.epilepsydiagnosis.org/seizure/motor-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/15562304
Lateral temporal lobe seizures may have an initial focal seizure with auditory or vertiginous features. The focal sensory auditory seizure is usually a basic sound such as buzzing or ringing (rather than formed speech). If the sound is heard in only one ear it suggests the seizure is in the contralateral hemisphere
lateral / neocortical temporal lobe seizure
http://www.medlink.com/article/neocortical_temporal_lobe_seizures
true
true
Lateral temporal lobe seizures may have an initial focal seizure with auditory or vertiginous features. The focal sensory auditory seizure is usually a basic sound such as buzzing or ringing (rather than formed speech). If the sound is heard in only one ear it suggests the seizure is in the contralateral hemisphere
https://www.epilepsydiagnosis.org/seizure/temporal-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/24967532
Animal models of seizures evoked by the beta-carboline DMCM (methyl-6,7-dimethoxy-4-ethyl-β-carboline-3-carboxylate).
methyl-6,7-dimethoxy-4-ethyl-beta-carboline-3-carboxylate model
Modified definition
true
Seizures onset with contralateral (or rarely ipsilateral or bilateral) focal somatosensory seizure, most commonly paraesthesias with tingling and/or numbness. There may be prickling, tickling, crawling or electric-shock sensations in the affected body part. The sensory abnormality may spread sequentially along a body part as the seizure spreads on the cortex according to the sensory homunculus (Jacksonian march), when this occurs motor activity in the affected body part commonly follows. Less common sensory features include pain and thermal perceptions (such as sensations of burning or cold).
primary sensory area (post-central gyrus) seizure
true
Seizures onset with contralateral (or rarely ipsilateral or bilateral) focal somatosensory seizure, most commonly paraesthesias with tingling and/or numbness. There may be prickling, tickling, crawling or electric-shock sensations in the affected body part. The sensory abnormality may spread sequentially along a body part as the seizure spreads on the cortex according to the sensory homunculus (Jacksonian march), when this occurs motor activity in the affected body part commonly follows. Less common sensory features include pain and thermal perceptions (such as sensations of burning or cold).
https://www.epilepsydiagnosis.org/seizure/occipital-overview.html
https://www.ncbi.nlm.nih.gov/pubmed/27657542
A form of epilepsy in which the patient has only a few seizures
Oligoepilepsy
rarely repeated seizure (oligo-epilepsy)
true
true
A form of epilepsy in which the patient has only a few seizures
https://en.wiktionary.org/wiki/oligoepilepsy
Focal cognitive seizures are seen, followed by a feeling of inability to move which may spread sequentially through body parts in a Jacksonian march (ictal paralysis), this may be followed by clonic jerking in affected body parts.
secondary sensory area (parietal upper bank of the sylvian fissure) seizure
true
Focal cognitive seizures are seen, followed by a feeling of inability to move which may spread sequentially through body parts in a Jacksonian march (ictal paralysis), this may be followed by clonic jerking in affected body parts.
https://www.epilepsydiagnosis.org/seizure/parietal-overview.html
Brain connectivity TM_BIN
The 'epilepsy classification TM_BIN' concept enables a compilation of diverse concepts that are related to classificactions in Epilepsy via the Axiome 'isClassificationFor some epilepsy'. Thus enables the adaptation of the ontology for text mining purposes for Epilepsy related information retrieval and information extraction.
epilepsy classification TM_BIN
Cognitive symptoms involve problems with concentration and memory and can be just as disabling as the other types of symptoms. The onset of cognitive symptoms is usually realised in the same way as negative symptoms in that they only begin to be noticeable after the dominance of psychotic episodes or positive symptoms have either been controlled with medication or diminished with age.
cognitive symptom
https://livingwithschizophreniauk.org/cognitive-symptoms-schizophrenia/
Modified Defintion
true
1
1
medicinal plant disposition
https://www.ncbi.nlm.nih.gov/pubmed/25856437
The disposition of a plant or its parts to be used to cure disease or relieve pain.
2012-02-24T12:05:43Z
idomal_namespace
IDOMAL:6000062
true
IDOMAL:6000062
louis
lead site I